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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013526 ID=TCONS_00013526|Name=TCONS_00013526|organism=Clytia hemisphaerica|type=transcript|length=2313bp
gttttcaaggtttttcccagaaaattgatagttttcaaggttttcaaggt
tgggtggttcattttcaaggttttcaaggttttcaaggtcccgtagacac
cctgaaTAACGGTCTTGCGGGCGGACAACGTTAGTTTGTTAGTGTCAAGT
GCTGTCAACACTTTGCACCAATTCGATAAAAGTTCTCTAGGTGTATTCCC
TCCACAGTAAAGATCGTCGGCAACTTTGGCTACGTAGCCATTCTCAATAA
GTTCACCAAGGACGCGGGACATAAGCTCTTCTAATGCAGTTTCTGATCCA
GGCATGCCCATCGCAGATCTGGCGTAGACACGGGTGCCACGAAAAGGTGT
CGATATTCCACAATATTTAACAGAGTTCCTTGCAAGCGGAATTTGGTAGA
ATGCTTGGGTGAGGTCGGTTTGGATGATATACTTCCACTGGCCAATTGAT
TGGAGGGTTGCATTAACGTCAGGCATGAGGGCGGGTTGCGGTTTGGAGTA
TTGGGCTATTTCACCAAAGGAAGTAACAAGACAAAATCCACCTGAAGGTT
TCTTCACGAGAAACAAAGGGTTTAGATACTCTGGAGTTATACCAAGATCC
TCTNTTTCTTCACGAGAAACAAAGGGTTTAGATACTCTGGAGTTATACCA
AGATCCTCTGGTTTACGAAGGACCTGGAGTCTCTCTAACTCATCACATTT
AGCTTGGAGTTTGTGAAGTTTATCGTTTGAATACTGCGGAACCTTCCCTT
TACGTTGAGGAGGATCAACTGGACCCATATTGACAATTGCTTTGATTGGT
CCGCTGGCTCCATTGTATCCTGGAAACGAGGGATCGAATACGGATGAAAA
TTCTTGATGAAGATCTTTGAAAGCAGATCGGATGTCGGGCGGGAGTTGGT
TACTTTCATCGAGTAAGATGGTGTGTAATGGAGGTGTAGGTGTGATTGCT
TCAAATGATTGGTCAGGGAGAGAAGATGGAACAGTTGGTGATGGATCTGA
TGCTGGGATGATCTGAGCAAACTGTTGGTTCTTGCGTAGCACTTTGGGTT
GGTCCGTGGAGTTGGGTATACGGATCTTGCCAGCTTTCGGGCGGGTGATC
ATAGGGGGCGGCCATGAAAGGTGTCGGTTGCTGCCATCGCCAGAGCGGGG
CTCGAGGACTATGTCTTGTTCATCCCATTCCGGGGTACAGTCATTTCTAA
TTACTTGTTGGGCCATACTGTGGTGGCTGGGGCACGGAGGATGTACGAGC
TTGTTCTTTTAACATTAGCAGGGTGTTTGAAGAAACGTAGGTTGTTGTAA
ACGTAGGCTGACCCATCACTAAAGTTGACTTGTCTCTTTGAGGGCCTGAG
CGTAATGTCGTGCTCGCTAAGAAAATGTATACCTGCAATAACATCTCCAT
CAAGGTTTTTAACAACTAGTGCTTCCAAAGAAAATGCTTTGTTATGGAAT
GTCAAGTTAATTCGAGTTTCACCAATTACTGAGAGTTCGGACTGACCATC
GGCTTGGACAGCGCTCTGCGAACTTGGAGTTATGGGAGCGTGTATGAGGT
GTGCCGTAGATTCACTGATCATGTTAGTTTCAGAGCCTTGTCCAGTGTCG
TAGAAATGTCATATTGTTTATATGTCATGTTAACAACAGGAGAGGATTTG
ATTTGGACACGTCTAGTTGATGATGGTAAGCTGATGGCTGCAACTTGGGA
GGGTAGGTCCTCAGCAGATTGGAGGTCAACTTCAGGTTGGTCATTCTCAT
CAAGGGCAGCAATAAGGCGGGCTTTGGCCATGAATCTTTGGTCTTGGTCT
GGGAGGATCTGACATTTGCTAAGGAAGTGGTTGGATGGCCAGTTCATGGA
CGAACATAGTGGGCATGATGCTTTGGTGGAGGATGGTCGACGTGTTGACG
ATGAGGGTTGTTTTGAGCGATGGAACGATGAAGCTGAACGTAAGACTTTG
GCTTCGTCATTAGACTGGATACTTTCGAGGAGGGAGTCCATTGCTTGCGA
TATTTCAGGTTTTATGGAAGCTAATGTTCGAGAGCGTAATTCTGTACCAT
ATCTCTGTTTGACGAGAGTAGGTAAGTCCTTGTGTAGCAAATGGAGCCAC
TGTAAAACAATAAAGTTCTCAAGGGTTGGTGTTAATTCCTCTTCTTCTCC
AATGGCTTCGCCATGGTGGGTTAATCCACTGTTCTCGTTCAAAAGTCTGT
CTTCAACAAAGGTCATTAAACGTTGAAAAAGGTCCTCTGGTCTTTCATCA
GGTTTTAACTGGATGTTGATTAAGTCGATAAAGTGTGCACCAGTAGACTG
AAAACCATAGTGG Run BLAST on NCBI protein sequence of TCONS_00013526-protein >TCONS_00013526-protein ID=TCONS_00013526-protein|Name=TCONS_00013526-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
HYGFQSTGAHFIDLINIQLKPDERPEDLFQRLMTFVEDRLLNENSGLTHH
GEAIGEEEELTPTLENFIVLQWLHLLHKDLPTLVKQRYGTELRSRTLASI
KPEISQAMDSLLESIQSNDEAKVLRSASSFHRSKQPSSSTRRPSSTKASC
PLCSSMNWPSNHFLSKCQILPDQDQRFMAKARLIAALDENDQPEVDLQSA
EDLPSQVAAISLPSSTRRVQIKSSPVVNMTYKQYDISTTLDKALKLT Run BLAST on NCBI transcript from alignment at sc0000168:183625..185937 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013526 ID=TCONS_00013526|Name=TCONS_00013526|organism=Clytia hemisphaerica|type=transcript|length=2313bp|location=Sequence derived from alignment at sc0000168:183625..185937 (Clytia hemisphaerica)
CCACTATGGTTTTCAGTCTACTGGTGCACACTTTATCGACTTAATCAACA
TCCAGTTAAAACCTGATGAAAGACCAGAGGACCTTTTTCAACGTTTAATG
ACCTTTGTTGAAGACAGACTTTTGAACGAGAACAGTGGATTAACCCACCA
TGGCGAAGCCATTGGAGAAGAAGAGGAATTAACACCAACCCTTGAGAACT
TTATTGTTTTACAGTGGCTCCATTTGCTACACAAGGACTTACCTACTCTC
GTCAAACAGAGATATGGTACAGAATTACGCTCTCGAACATTAGCTTCCAT
AAAACCTGAAATATCGCAAGCAATGGACTCCCTCCTCGAAAGTATCCAGT
CTAATGACGAAGCCAAAGTCTTACGTTCAGCTTCATCGTTCCATCGCTCA
AAACAACCCTCATCGTCAACACGTCGACCATCCTCCACCAAAGCATCATG
CCCACTATGTTCGTCCATGAACTGGCCATCCAACCACTTCCTTAGCAAAT
GTCAGATCCTCCCAGACCAAGACCAAAGATTCATGGCCAAAGCCCGCCTT
ATTGCTGCCCTTGATGAGAATGACCAACCTGAAGTTGACCTCCAATCTGC
TGAGGACCTACCCTCCCAAGTTGCAGCCATCAGCTTACCATCATCAACTA
GACGTGTCCAAATCAAATCCTCTCCTGTTGTTAACATGACATATAAACAA
TATGACATTTCTACGACACTGGACAAGGCTCTGAAACTAACATGATCAGT
GAATCTACGGCACACCTCATACACGCTCCCATAACTCCAAGTTCGCAGAG
CGCTGTCCAAGCCGATGGTCAGTCCGAACTCTCAGTAATTGGTGAAACTC
GAATTAACTTGACATTCCATAACAAAGCATTTTCTTTGGAAGCACTAGTT
GTTAAAAACCTTGATGGAGATGTTATTGCAGGTATACATTTTCTTAGCGA
GCACGACATTACGCTCAGGCCCTCAAAGAGACAAGTCAACTTTAGTGATG
GGTCAGCCTACGTTTACAACAACCTACGTTTCTTCAAACACCCTGCTAAT
GTTAAAAGAACAAGCTCGTACATCCTCCGTGCCCCAGCCACCACAGTATG
GCCCAACAAGTAATTAGAAATGACTGTACCCCGGAATGGGATGAACAAGA
CATAGTCCTCGAGCCCCGCTCTGGCGATGGCAGCAACCGACACCTTTCAT
GGCCGCCCCCTATGATCACCCGCCCGAAAGCTGGCAAGATCCGTATACCC
AACTCCACGGACCAACCCAAAGTGCTACGCAAGAACCAACAGTTTGCTCA
GATCATCCCAGCATCAGATCCATCACCAACTGTTCCATCTTCTCTCCCTG
ACCAATCATTTGAAGCAATCACACCTACACCTCCATTACACACCATCTTA
CTCGATGAAAGTAACCAACTCCCGCCCGACATCCGATCTGCTTTCAAAGA
TCTTCATCAAGAATTTTCATCCGTATTCGATCCCTCGTTTCCAGGATACA
ATGGAGCCAGCGGACCAATCAAAGCAATTGTCAATATGGGTCCAGTTGAT
CCTCCTCAACGTAAAGGGAAGGTTCCGCAGTATTCAAACGATAAACTTCA
CAAACTCCAAGCTAAATGTGATGAGTTAGAGAGACTCCAGGTCCTTCGTA
AACCAGAGGATCTTGGTATAACTCCAGAGTATCTAAACCCTTTGTTTCTC
GTGAAGAAANAGAGGATCTTGGTATAACTCCAGAGTATCTAAACCCTTTG
TTTCTCGTGAAGAAACCTTCAGGTGGATTTTGTCTTGTTACTTCCTTTGG
TGAAATAGCCCAATACTCCAAACCGCAACCCGCCCTCATGCCTGACGTTA
ATGCAACCCTCCAATCAATTGGCCAGTGGAAGTATATCATCCAAACCGAC
CTCACCCAAGCATTCTACCAAATTCCGCTTGCAAGGAACTCTGTTAAATA
TTGTGGAATATCGACACCTTTTCGTGGCACCCGTGTCTACGCCAGATCTG
CGATGGGCATGCCTGGATCAGAAACTGCATTAGAAGAGCTTATGTCCCGC
GTCCTTGGTGAACTTATTGAGAATGGCTACGTAGCCAAAGTTGCCGACGA
TCTTTACTGTGGAGGGAATACACCTAGAGAACTTTTATCGAATTGGTGCA
AAGTGTTGACAGCACTTGACACTAACAAACTAACGTTGTCCGCCCGCAAG
ACCGTTAttcagggtgtctacgggaccttgaaaaccttgaaaaccttgaa
aatgaaccacccaaccttgaaaaccttgaaaactatcaattttctgggaa
aaaccttgaaaac Coding sequence (CDS) from alignment at sc0000168:183625..185937 >TCONS_00013526 ID=TCONS_00013526|Name=TCONS_00013526|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at sc0000168:183625..185937 (Clytia hemisphaerica)
CACTATGGTTTTCAGTCTACTGGTGCACACTTTATCGACTTAATCAACAT
CCAGTTAAAACCTGATGAAAGACCAGAGGACCTTTTTCAACGTTTAATGA
CCTTTGTTGAAGACAGACTTTTGAACGAGAACAGTGGATTAACCCACCAT
GGCGAAGCCATTGGAGAAGAAGAGGAATTAACACCAACCCTTGAGAACTT
TATTGTTTTACAGTGGCTCCATTTGCTACACAAGGACTTACCTACTCTCG
TCAAACAGAGATATGGTACAGAATTACGCTCTCGAACATTAGCTTCCATA
AAACCTGAAATATCGCAAGCAATGGACTCCCTCCTCGAAAGTATCCAGTC
TAATGACGAAGCCAAAGTCTTACGTTCAGCTTCATCGTTCCATCGCTCAA
AACAACCCTCATCGTCAACACGTCGACCATCCTCCACCAAAGCATCATGC
CCACTATGTTCGTCCATGAACTGGCCATCCAACCACTTCCTTAGCAAATG
TCAGATCCTCCCAGACCAAGACCAAAGATTCATGGCCAAAGCCCGCCTTA
TTGCTGCCCTTGATGAGAATGACCAACCTGAAGTTGACCTCCAATCTGCT
GAGGACCTACCCTCCCAAGTTGCAGCCATCAGCTTACCATCATCAACTAG
ACGTGTCCAAATCAAATCCTCTCCTGTTGTTAACATGACATATAAACAAT
ATGACATTTCTACGACACTGGACAAGGCTCTGAAACTAACATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013526-exon-sc0000168-1491911889:183625..185937 | TCONS_00013526-exon-sc0000168-1491911889:183625..185937 | Clytia hemisphaerica | exon |
| TCONS_00013526-exon-sc0000168-1510915933:183625..185937 | TCONS_00013526-exon-sc0000168-1510915933:183625..185937 | Clytia hemisphaerica | exon |
| TCONS_00013526-exon-sc0000168-1575043694:183625..185937 | TCONS_00013526-exon-sc0000168-1575043694:183625..185937 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000168 | supercontig | sc0000168:183625..185937 . |
Blast
The following BLAST results are available for this feature:
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