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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013531 ID=TCONS_00013531|Name=TCONS_00013531|organism=Clytia hemisphaerica|type=transcript|length=1308bp
CAGGCGTTTTCTTCATTCACTTCTATAGATATGTGAAAATTTGATGGCGA
AATATTCGAAAAGAATCGCGTATTTCCTTCTTATTTTAAACTTTCACCTC
TCTTAAAACATGGACCAAGAGGAATGAAAATGGCCTCTTTTCTTCGAGTT
GTTTTTCTAGTAAGTATTTTAAAAAGAACTTTTGGTGGATGCTCTCATGG
TAAATTTATCCAAAACGAGACTGGAAAAGCTGTTGCTCCACAGTTCAGGC
CTAAGTTTATGACAATAGCAGACTCACAGATTCAAtgttttcttaaacaa
aaattcaaagattGCGAATGCTGGTTGTTGGAGGTCAAAACTCTTTCGAC
AAATAAATACTCATGTCGATTCTACTTGAAAGACGATGTTTATTCATTCA
TTGAGGACGGGAGTGCAATCATATATGAACAGCACAAgaatccgtgtcaa
ttcaatcaAAAACCTGGAGATGCTTGTTATAAAATACCTAAAGATTGCCA
AGAGATACAGCAAAGAGGTTTGGAAATTAACGGAGTCTATGATATCGAGA
TTGACGGACAAACTAAGTCTGTTTATTGTGATTTAACAGAAAATCAAGGT
GGTTGGACTGCCATTCAAAGAAGAGTATCAGGGGATAtgaatttcaatag
aaattggATCGAATATAAAAATGGTTTTGGAGATCCTGCCACGAATTACT
GGATAGGTCTCGATTCCATTTATGCGCTGACTAATGGTCGCACTGACGTG
TTGCTTCGAGTTACAGCGGAATCTTTTGACGGGCAAAAAGCATTTGCCGT
GTACAAAGGTTTCAGTATTGGAAGTGAAAGTGAGAAGTTTAAACTGACTA
GTGGTGACTATCTCGATGGTCTCCAAGGAAAGAGTTGGACAGCATTTACC
GGGATGTTTTTCAGTACCAGAGATGTAGacaatgataaaaaaagtgacgg
aaacTGCGCCATTTCAAGAGAGGGCGGTGGGTGGTATAAATCTTGCACTT
GGTTAAACATAAACGGGCGTTATGGGGCGGATGCAACTAAAATTGGAGAC
GCTTATATGCATTGGACAAATTTCAAACAacatgaaagcttaaaatcgat
taGTTTATCCATCAAAAGATCTTGACCTTGAAAAAAGTGGAATTGATAAT
GAGCAAAAATCTATCGAAACATTGACAATTGTCGATCTCATGTATGTTTC
TTTTTGTGCTTTGTTCACGAAGAAAATGTAATGCAAGGATGATAACATAG
TTCGGACACCCCCTTTCTTAAGGGGGGATGACACCTTCCAAAAAAGTGAA
GAATGGGG Run BLAST on NCBI protein sequence of TCONS_00013531-protein >TCONS_00013531-protein ID=TCONS_00013531-protein|Name=TCONS_00013531-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
MKMASFLRVVFLVSILKRTFGGCSHGKFIQNETGKAVAPQFRPKFMTIAD
SQIQCFLKQKFKDCECWLLEVKTLSTNKYSCRFYLKDDVYSFIEDGSAII
YEQHKNPCQFNQKPGDACYKIPKDCQEIQQRGLEINGVYDIEIDGQTKSV
YCDLTENQGGWTAIQRRVSGDMNFNRNWIEYKNGFGDPATNYWIGLDSIY
ALTNGRTDVLLRVTAESFDGQKAFAVYKGFSIGSESEKFKLTSGDYLDGL
QGKSWTAFTGMFFSTRDVDNDKKSDGNCAISREGGGWYKSCTWLNINGRY
GADATKIGDAYMHWTNFKQHESLKSISLSIKRS Run BLAST on NCBI transcript from alignment at sc0000168:303379..304686 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013531 ID=TCONS_00013531|Name=TCONS_00013531|organism=Clytia hemisphaerica|type=transcript|length=1308bp|location=Sequence derived from alignment at sc0000168:303379..304686 (Clytia hemisphaerica)
CCCCATTCTTCACTTTTTTGGAAGGTGTCATCCCCCCTTAAGAAAGGGGG
TGTCCGAACTATGTTATCATCCTTGCATTACATTTTCTTCGTGAACAAAG
CACAAAAAGAAACATACATGAGATCGACAATTGTCAATGTTTCGATAGAT
TTTTGCTCATTATCAATTCCACTTTTTTCAAGGTCAAGATCTTTTGATGG
ATAAACtaatcgattttaagctttcatgtTGTTTGAAATTTGTCCAATGC
ATATAAGCGTCTCCAATTTTAGTTGCATCCGCCCCATAACGCCCGTTTAT
GTTTAACCAAGTGCAAGATTTATACCACCCACCGCCCTCTCTTGAAATGG
CGCAgtttccgtcactttttttatcattgtCTACATCTCTGGTACTGAAA
AACATCCCGGTAAATGCTGTCCAACTCTTTCCTTGGAGACCATCGAGATA
GTCACCACTAGTCAGTTTAAACTTCTCACTTTCACTTCCAATACTGAAAC
CTTTGTACACGGCAAATGCTTTTTGCCCGTCAAAAGATTCCGCTGTAACT
CGAAGCAACACGTCAGTGCGACCATTAGTCAGCGCATAAATGGAATCGAG
ACCTATCCAGTAATTCGTGGCAGGATCTCCAAAACCATTTTTATATTCGA
TccaatttctattgaaattcaTATCCCCTGATACTCTTCTTTGAATGGCA
GTCCAACCACCTTGATTTTCTGTTAAATCACAATAAACAGACTTAGTTTG
TCCGTCAATCTCGATATCATAGACTCCGTTAATTTCCAAACCTCTTTGCT
GTATCTCTTGGCAATCTTTAGGTATTTTATAACAAGCATCTCCAGGTTTT
tgattgaattgacacggattcTTGTGCTGTTCATATATGATTGCACTCCC
GTCCTCAATGAATGAATAAACATCGTCTTTCAAGTAGAATCGACATGAGT
ATTTATTTGTCGAAAGAGTTTTGACCTCCAACAACCAGCATTCGCaatct
ttgaatttttgtttaagaaaacaTTGAATCTGTGAGTCTGCTATTGTCAT
AAACTTAGGCCTGAACTGTGGAGCAACAGCTTTTCCAGTCTCGTTTTGGA
TAAATTTACCATGAGAGCATCCACCAAAAGTTCTTTTTAAAATACTTACT
AGAAAAACAACTCGAAGAAAAGAGGCCATTTTCATTCCTCTTGGTCCATG
TTTTAAGAGAGGTGAAAGTTTAAAATAAGAAGGAAATACGCGATTCTTTT
CGAATATTTCGCCATCAAATTTTCACATATCTATAGAAGTGAATGAAGAA
AACGCCTG Coding sequence (CDS) from alignment at sc0000168:303379..304686 >TCONS_00013531 ID=TCONS_00013531|Name=TCONS_00013531|organism=Clytia hemisphaerica|type=CDS|length=1002bp|location=Sequence derived from alignment at sc0000168:303379..304686 (Clytia hemisphaerica)
TCAAGATCTTTTGATGGATAAACtaatcgattttaagctttcatgtTGTT
TGAAATTTGTCCAATGCATATAAGCGTCTCCAATTTTAGTTGCATCCGCC
CCATAACGCCCGTTTATGTTTAACCAAGTGCAAGATTTATACCACCCACC
GCCCTCTCTTGAAATGGCGCAgtttccgtcactttttttatcattgtCTA
CATCTCTGGTACTGAAAAACATCCCGGTAAATGCTGTCCAACTCTTTCCT
TGGAGACCATCGAGATAGTCACCACTAGTCAGTTTAAACTTCTCACTTTC
ACTTCCAATACTGAAACCTTTGTACACGGCAAATGCTTTTTGCCCGTCAA
AAGATTCCGCTGTAACTCGAAGCAACACGTCAGTGCGACCATTAGTCAGC
GCATAAATGGAATCGAGACCTATCCAGTAATTCGTGGCAGGATCTCCAAA
ACCATTTTTATATTCGATccaatttctattgaaattcaTATCCCCTGATA
CTCTTCTTTGAATGGCAGTCCAACCACCTTGATTTTCTGTTAAATCACAA
TAAACAGACTTAGTTTGTCCGTCAATCTCGATATCATAGACTCCGTTAAT
TTCCAAACCTCTTTGCTGTATCTCTTGGCAATCTTTAGGTATTTTATAAC
AAGCATCTCCAGGTTTTtgattgaattgacacggattcTTGTGCTGTTCA
TATATGATTGCACTCCCGTCCTCAATGAATGAATAAACATCGTCTTTCAA
GTAGAATCGACATGAGTATTTATTTGTCGAAAGAGTTTTGACCTCCAACA
ACCAGCATTCGCaatctttgaatttttgtttaagaaaacaTTGAATCTGT
GAGTCTGCTATTGTCATAAACTTAGGCCTGAACTGTGGAGCAACAGCTTT
TCCAGTCTCGTTTTGGATAAATTTACCATGAGAGCATCCACCAAAAGTTC
TTTTTAAAATACTTACTAGAAAAACAACTCGAAGAAAAGAGGCCATTTTC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013531-exon-sc0000168-1491911889:303379..304686 | TCONS_00013531-exon-sc0000168-1491911889:303379..304686 | Clytia hemisphaerica | exon |
| TCONS_00013531-exon-sc0000168-1510915933:303379..304686 | TCONS_00013531-exon-sc0000168-1510915933:303379..304686 | Clytia hemisphaerica | exon |
| TCONS_00013531-exon-sc0000168-1575043694:303379..304686 | TCONS_00013531-exon-sc0000168-1575043694:303379..304686 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000168 | supercontig | sc0000168:303379..304686 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00013531 vs. Swiss-Prot (Human)
Match: TENR (Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3) HSP 1 Score: 144.436 bits (363), Expect = 1.482e-36 Identity = 85/212 (40.09%), Postives = 117/212 (55.19%), Query Frame = 1
Query: 466 GDACYKIPKDCQEIQQRGLEINGVYDIEIDG---QTKSVYCDLTENQGGWTAIQRRVSGDMNFNRNWIEYKNGFGDPATNYWIGLDSIYALTN-GRTDVLLRVTAESFDGQK-AFAVYKGFSIGSESEKFKLTSGDYLDGLQGKSWTAFTGMFFSTRDVDNDKKSDGNCAISREGGGWYKSCTWLNINGRYGADATKIGDAYMHWTNFKQHE 1086
G + P+DC + G ++GVY I ++G Q VYCD+T + GGW QRR +G +F R W +Y+ GFG+ +W+GLD+I+ +T+ GR + LRV DGQ+ AFA Y FS+ +KL G Y +G G S + G FST D DND NCA+S +G WYK+C N+NG+YG G + HW K HE
Sbjct: 1128 GGRVFPHPQDCAQHLMNGDTLSGVYPIFLNGELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVGFGNVEDEFWLGLDNIHRITSQGRYE--LRVDMR--DGQEAAFASYDRFSVEDSRNLYKLRIGSY-NGTAGDSLSYHQGRPFSTEDRDNDVAVT-NCAMSYKGAWWYKNCHRTNLNGKYGESRHSQGINWYHW---KGHE 1330
The following BLAST results are available for this feature:
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