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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013553 ID=TCONS_00013553|Name=TCONS_00013553|organism=Clytia hemisphaerica|type=transcript|length=3680bp
TGATGACTTGATAAGAAAAAATGAGGTACGCATCTAACtgcaaaaacaaa
gcaaaagaGAAAGTAGTAGTAGTAGAATACGAGTTCTATTCACTGAAAGT
ACTTCCATCATTATTTTCGTTTGGTTAATTTGAATTGAGGgcattttttg
gaaaagaaatgGCTACTTCTAAAGAGCAGATTCACCAAGAGGAAGAGCAT
GCTAGAGTTCGCAACGAGTTAGATGTGGATCCATCGAAATGCTCCATATG
TTTGTTTCCGTtacccaaattttcaaattcgaatAAATGCAAACAATGTT
TGGAGAAGATTGAAGCAATACCAACTGGTTTTCAATTTGAAGTTGCCGGA
ACCGAGCGAAAAGAGTTTGAATGTCCAATTTGTCTTTGTATCATTCGAAA
TGCGACAGAGTTACCTTGTGAACATTTGATGTGTAAAGATTGCTTGGAGC
ATTACGAAAAAGGACAAATCGACAAATCAGAAAGAAAACACCAGTGCGCT
CAACAGATCGTATGATTCAAACAACACTTCCAATCAAGTGTTTACAAAAG
AAATGTGTTTGGACTGGTTGTATTATGGATTATGAGGAGCACCAAAACAG
ACATTGCAATTTTGTGGTAATACGTTGTCCGTATTATGATTTGGGTTGTC
TCACTCAAATGGAGAGAGCAAAACTACCAGTTCATAATCAAGCAAAACGT
CCCATACACGATTCGCTCCTTCTAACGGCTGTTAGTGCGTTTACAATCGA
ACGAAAGGATTTCAAACTCAAGATGGACGAGCAAAACCGGAAGATTGAGA
GCTTACAAAGTCTTCACGCGACCACGATAAAAAGAtgtgaaaatctagaa
aaagaTAATCTGCAACTGAAACAAAGAGTTCAAAGACATGATGAGGCGAT
CAGGGATATCAAAAGCTCCTTATTTGAAATGCAAGGCAACGTTGATAGCA
GTAGCGATTTAGATTCGTTGAAGAAAGACTTGGGAGATCAAAGCAAAGAA
GTAAAGAATCTGAAGATATTTGCCGAACAAACTAGTAGACTGCACAAAAC
ATTTAGCTATCCAGATATCCAAGATGTTTTCACATATCTCCTTCCAGACC
AATATGAAGCAAATAACGAAATTAAACAGTGGAAACTCTTAACCGAAGAA
GTTACAGCAAAACCAATAGATCAGGATTGTGAATATCTGAAAACATTGAA
AGACTCGATAGTTCGGTACCAGGGTACAATATATCCGGCAAAATGGAAAA
CGAGACTAACGAAGTGGCGAAAATATATTGACTATGGGGTCAACGTGTGC
TGTTAtgtgaaattatttttgtataagAATAGTAGAAAGTTTTCActgaa
agttttcaaaacaaCAGACGAATTTGATCGAACAGTGGCCAAAAGCAACA
AATGGTGCAAACACTCGAATGACACTGCAAGCTATTTTGACTGGAAGCAA
CTAATTCTTTATGTAGCGATATTTGCAAAGGACTTTGAAGATGCTTATAT
TGTAAATTGGGAAGATGTTAACGATACTAAAAGTGTTGCCACCGATGGAA
GGATCGTTCCTGTGGAAGAAGCATTCGTCTCAAACGGCTATATTATTTTC
TCAATTCTTTGAATATACAAACTTTAAAGAAATTCGAAATTTGAATCTAA
AATGAAGGAGAGTTTTAAAATGTAGCCCCAATGTAAAGTTTaaggaacaa
aaacagaaaaatgactGGAAACTGATTGTGAATATCGTTTCTAGGGGCAC
TTTCGGAAGTCGCCTTTGAGACATCCAGAGTTTCAAATAAAGTTTTTCAC
GATCTCGTTATAGTTTTTGAGGGTCACGAGGATGGAATGTTGGTATGAGT
CTGAAGTTTTTACAAAGCTGTACTATAGGGGCACTACAAGCcgaaattgt
ttttgtttttacttttgtttatttttcatagtCATGTcttttttgaaagg
aaaaaaagCATATTTCTTGTGAGTATCAATATTTTAACATAAATCTTGCc
tacattaaaaaaaactgtTAGTTTGCTGTCACCTGGCCCTAGATTTGAAA
GTGTAAATATAATAACACTACAGTAACAAAAATCTGACTAAAAGCATGat
aaaagtttataaaaagtttaaaaaactttaaaaattacTCAAAGACATCC
ATCAGCTTTAATAAAAAACATCATCTTTCCCTTGTCTGAAGAATTGTATC
TACCAACCACTAATTATTGCAATCCGTTTTAAAAAGCCCTGACTTTAATA
TCAAACAACATTCTCATAAAACATTACTTTTTCAAATGAGTTTTATCtag
attgaaaaaaatgttttaaaaatttgaaaataatttcctaCAATAATAAC
CATAATAAGCACCAAAATTCTAAGTTCTCAGTTGCTTAGCAAATAAATCC
TTATTCGACATCCATCTgtccttcattttcattttcaaagtcgCCTTCAT
CTTCATCACCCTCCTCTATAACATCCATCTCATCTTCCGGTGGACAGTCC
ACCAATAATTGCTCAATGTGTGCTATCATATCATCATTCTGAAAACCTGT
CTTCTCAATCAACTCTAAAGCTTTCTCGAGATAAAAACGTGGATTATCAG
TATCCTTCATCAATGATTTTGCTAAGCCAAGATAATACCAAATACGTATA
TCATCTTCGTTTTCCTCAATAAGTTGATCAACAATGGGAGAAACTTTATC
GTATATTTCAACTTCAATCAAAAGCTTAATGAGAGTCACACGGGCTTCAT
AAGACAAATTCTCTGGAATAGAATCTTCTTCAATATTCGCTGACAGCTCC
GTCCACAATGACAAAGCTTTCTCTGTTGCTTTTTTAGCATCATCCATTTT
GCTTTGATTTAGCAACAAGTTCGACATAGAGACAGCAGCATCTAAACTTT
TTTCGTCAGTCTCAACAGCTAGTTTACAATACTTTTCACATTGTTCTTCA
GCATCATCTTCCATACAACAATCAGTCATAAAAATTTCGGCAAGAGAACA
ATAAACATTGGCTACATCGCCGTTTGAAAGAGGCTTTTCATCATCACGTT
TTTCTTTGTTATTCTTTTGATATTCAATAGTTTCCTTCATGATAACAATA
CCCTTTTCATAATGCTGAACTGCTTCTCTGCCTTCAGTAATTTGCCCAAG
ATATAAATATTTAACATGACCAGTGTCTGGTTCTAAACGAACAGCTTCAT
TAAAATGTTTCATTGCATTCCCAACATCTCCTGTCTCCGCATAAACATTT
CCATAACATTCATGAATTTTGACATTATTGGGTTCCATATCCAACGCTTT
TTGGCAAAACATCAATGCCATATTATGTTCAAAGTTTTCAAGATACTGTT
CAACTCTTGTCATTAGATCCTCGACtgtaaatttagatttttcttcttca
gtttcatcCTTTTCCTCTTTGCTTTCTTCTTGTACATTTTCACTTTCGGC
AGCTTCATTGTCAATGGCAATGTTTTCATCaccttttttcttatttcctc
ctctcttctttttctttcccattttcaattttatgatAATAGCTAAATGA
AACGAGAAATGATTTTAGAGAGAACACAttaaagaggcccccccagcgga
ccctcaattcacgcaatcacgcaaattttcctcgagtttcacgcaataac
ccaatttttaaggaaatcggaaaattttcg Run BLAST on NCBI transcript from alignment at sc0000170:149236..154225+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013553 ID=TCONS_00013553|Name=TCONS_00013553|organism=Clytia hemisphaerica|type=transcript|length=4990bp|location=Sequence derived from alignment at sc0000170:149236..154225+ (Clytia hemisphaerica)
TGATGACTTGATAAGAAAAAATGAGGTACGCATCTAACtgcaaaaacaaa
gcaaaagaGAAAGTAGTAGTAGTAGAATACGAGTTCTATTCACTGAAAGT
ACTTCCATCATTATTTTCGTTTGGTTAATTTGAATTGAGGgcattttttg
gaaaagaaatgGCTACTTCTAAAGAGCAGATTCACCAAGAGGAAGAGCAT
GCTAGAGTTCGCAACGAGTTAGATGTGGATCCATCGAAATGCTCCATATG
TTTGTTTCCGTtacccaaattttcaaattcgaatAAATGCAAACAATGTT
TGGAGAAGATTGAAGCAATACCAACTGGTTTTCAATTTGAAGTTGCCGGA
ACCGAGCGAAAAGAGTTTGAATGTCCAATTTGTCTTTGTATCATTCGAAA
TGCGACAGAGTTACCTTGTGAACATTTGATGTGTAAAGATTGCTTGGAGC
ATTACGAAAAAGGACAAATCGACAAATCAGAAAGGtataaaaaagtgcat
tttatcAAAACAACATACACTAGATTTTCCTCTTGACCCGAACAATCACT
TGCAAAGTTCTATACCAAAATGCAAGAAATTCAACACTTTATTTAGCATA
CAATTATTCGAATCAAAATCGCGACGTGTTTTAAGGCTAATAGTTGACAT
CcttcaattctattttatttattttgatgtcTATGTATAAGAAAAGAGAA
TCGAAAATCGTATTGATTTATTTATAAAATGTCTCTTGTATTTACAGGGA
AGGGCGTGAGAAGGCGGAATTTAGTTGCAGTGTTTGTATGACTCCGTACC
AAGTGAAGGAGGTATTAGTCTTCTTATTCTCCCCAGTTTCCTGAAATGAT
TCAAAAGGACTAGGTCCAAGCTAAAAAATTTTTCTATGGTTAACAAATAG
TTATATCTGTGCTCACTCGAAAAAAAGAAGCTAATTTGCGTCCGTAAAAT
AACGGATATTTACACCAAATCATTTTCTACGACCCTGTGTCTAACGGCGA
TCACAAAATGCACTCTACGCCCCCTATCCCAgacccaggggggggggctc
tagTTGCTATTGTGCAATATGTCCATTGCATTATCCATTATGTGAAAACC
ACTTTTAAGGTAGTTTGTCTAATTATGCTGACTTTGTTTCCATCCACATG
GTAGCAAAGAAGAGTTCACTCTTAAAACAAATGGACTTTTAACCAAAGAT
ATCATAAAAAGGATAATAATTTGTTTTCACAGAAAACACCAGTGCGCTCA
ACAGATCGTATGATTCAAACAACACTTCCAATCAAGTGTTTACAAAAGAA
ATGTGTTTGGACTGGTTGTATTATGGATTATGAGGTAAGCGCCTTTTCTC
GACGTATTTTTCTTAAGTTCgatagattccaaaaaaaaacgaaacaacGG
CGTGAATATACCACATATCAAAGCGTTCATAGTTATGAATTAAATCACGA
TTAAAAGCAAACTTTGTTCTCTACTAATCGTTGTATCAGCAATGAAGTAA
TTTTGACCTCAATCATCTTTTCGTTACAGGAGCACCAAAACAGACATTGC
AATTTTGTGGTAATACGTTGTCCGTATTATGATTTGGGTTGTCTCACTCA
AGTACGTATTATTTCTTCACCTCTAGGATTCCGCGAGTCCGCAAATCTTA
ATTTTTAAAAGGCGCTTACGTAAAATGCGAAATTCAATCTTTGAAACTTG
TCGCTATATATATAACAACCAAACAGAAGCCTCCAATTTGTCGGGGTTTC
CTTTAAGGTTTGAGGAATAGGTGAGCTATAATATTAAGACTACAGTAAAG
TCAATTAATTAGTCaactaattcgatcttcaaggggctTTTCTTTGAACT
GGAAAAGTATTCGAATCACAGAGAGCATTTTACATTCCTCCTGAGgtgac
caatattttagttcgaattatagaaagattcgaataaaagaGAGTTATCT
GTATTTTTCACTTTACAGATGGAGAGAGCAAAACTACCAGTTCATAATCA
AGCAAAACGTCCCATACACGATTCGCTCCTTCTAACGGCTGTTAGTGCGT
TTACAATCGAACGAAAGGATTTCAAACTCAAGATGGACGAGCAAAACCGG
AAGATTGAGAGCTTACAAAGTCTTCACGCGACCACGATAAAAAGAtgtga
aaatctagaaaaagaTAATCTGCAACTGAAACAAAGAGTTCAAAGACATG
ATGAGGCGATCAGGGATATCAAAAGCTCCTTATTTGAAATGCAAGGCAAC
GTTGATAGCAGTAGCGATTTAGATTCGTTGAAGAAAGACTTGGGAGATCA
AAGCAAAGAAGTAAAGAATCTGAAGATATTTGCCGAACAAACTAGTAGAC
TGCACAAAACATTTAGCTATCCAGATATCCAAGATGTTTTCACATATCTC
CTTCCAGACCAATATGAAGCAAATAACGAAATTAAACAGTGGAAACTCTT
AACCGAAGAAGTTACAGCAAAACCAATAGATCAGGATTGTGAATATCTGA
AAACATTGAAAGACTCGATAGTTCGGTACCAGGGTACAATATATCCGGCA
AAATGGAAAACGAGACTAACGAAGTGGCGAAAATATATTGACTATGGGGT
CAACGTGTGCTGTTAtgtgaaattatttttgtataagAATAGTAGAAAGT
TTTCActgaaagttttcaaaacaaCAGACGAATTTGATCGAACAGTGGCC
AAAAGCAACAAATGGTGCAAACACTCGAATGACACTGCAAGCTATTTTGA
CTGGAAGCAACTAATTCTTTATGTAGCGATATTTGCAAAGGACTTTGAAG
ATGCTTATATTGTAAATTGGGAAGATGTTAACGATACTAAAAGTGTTGCC
ACCGATGGAAGGATCGTTCCTGTGGAAGAAGCATTCGTCTCAAACGGCTA
TATTATTTTCTCAATTCTTTGAATATACAAACTTTAAAGAAATTCGAAAT
TTGAATCTAAAATGAAGGAGAGTTTTAAAATGTAGCCCCAATGTAAAGTT
TaaggaacaaaaacagaaaaatgactGGAAACTGATTGTGAATATCGTTT
CTAGGGGCACTTTCGGAAGTCGCCTTTGAGACATCCAGAGTTTCAAATAA
AGTTTTTCACGATCTCGTTATAGTTTTTGAGGGTCACGAGGATGGAATGT
TGGTATGAGTCTGAAGTTTTTACAAAGCTGTACTATAGGGGCACTACAAG
CcgaaattgtttttgtttttacttttgtttatttttcatagtCATGTctt
ttttgaaaggaaaaaaagCATATTTCTTGTGAGTATCAATATTTTAACAT
AAATCTTGCctacattaaaaaaaactgtTAGTTTGCTGTCACCTGGCCCT
AGATTTGAAAGTGTAAATATAATAACACTACAGTAACAAAAATCTGACTA
AAAGCATGataaaagtttataaaaagtttaaaaaactttaaaaattacTC
AAAGACATCCATCAGCTTTAATAAAAAACATCATCTTTCCCTTGTCTGAA
GAATTGTATCTACCAACCACTAATTATTGCAATCCGTTTTAAAAAGCCCT
GACTTTAATATCAAACAACATTCTCATAAAACATTACTTTTTCAAATGAG
TTTTATCtagattgaaaaaaatgttttaaaaatttgaaaataatttccta
CAATAATAACCATAATAAGCACCAAAATTCTAAGTTCTCAGTTGCTTAGC
AAATAAATCCTTATTCGACATCCATCTgtccttcattttcattttcaaag
tcgCCTTCATCTTCATCACCCTCCTCTATAACATCCATCTCATCTTCCGG
TGGACAGTCCACCAATAATTGCTCAATGTGTGCTATCATATCATCATTCT
GAAAACCTGTCTTCTCAATCAACTCTAAAGCTTTCTCGAGATAAAAACGT
GGATTATCAGTATCCTTCATCAATGATTTTGCTAAGCCAAGATAATACCA
AATACGTATATCATCTTCGTTTTCCTCAATAAGTTGATCAACAATGGGAG
AAACTTTATCGTATATTTCAACTTCAATCAAAAGCTTAATGAGAGTCACA
CGGGCTTCATAAGACAAATTCTCTGGAATAGAATCTTCTTCAATATTCGC
TGACAGCTCCGTCCACAATGACAAAGCTTTCTCTGTTGCTTTTTTAGCAT
CATCCATTTTGCTTTGATTTAGCAACAAGTTCGACATAGAGACAGCAGCA
TCTAAACTTTTTTCGTCAGTCTCAACAGCTAGTTTACAATACTTTTCACA
TTGTTCTTCAGCATCATCTTCCATACAACAATCAGTCATAAAAATTTCGG
CAAGAGAACAATAAACATTGGCTACATCGCCGTTTGAAAGAGGCTTTTCA
TCATCACGTTTTTCTTTGTTATTCTTTTGATATTCAATAGTTTCCTTCAT
GATAACAATACCCTTTTCATAATGCTGAACTGCTTCTCTGCCTTCAGTAA
TTTGCCCAAGATATAAATATTTAACATGACCAGTGTCTGGTTCTAAACGA
ACAGCTTCATTAAAATGTTTCATTGCATTCCCAACATCTCCTGTCTCCGC
ATAAACATTTCCATAACATTCATGAATTTTGACATTATTGGGTTCCATAT
CCAACGCTTTTTGGCAAAACATCAATGCCATATTATGTTCAAAGTTTTCA
AGATACTGTTCAACTCTTGTCATTAGATCCTCGACtgtaaatttagattt
ttcttcttcagtttcatcCTTTTCCTCTTTGCTTTCTTCTTGTACATTTT
CACTTTCGGCAGCTTCATTGTCAATGGCAATGTTTTCATCaccttttttc
ttatttcctcctctcttctttttctttcccattttcaattttatgatAAT
AGCTAAATGAAACGAGAAATGATTTTAGAGAGAACACAttaaagaggccc
ccccagcggaccctcaattcacgcaatcacgcaaattttcctcgagtttc
acgcaataacccaatttttaaggaaatcggaaaattttcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013553-exon-sc0000170-1491911889:149236..149719 | TCONS_00013553-exon-sc0000170-1491911889:149236..149719 | Clytia hemisphaerica | exon |
| TCONS_00013553-exon-sc0000170-1510915933:149236..149719 | TCONS_00013553-exon-sc0000170-1510915933:149236..149719 | Clytia hemisphaerica | exon |
| TCONS_00013553-exon-sc0000170-1575043694:149236..149719 | TCONS_00013553-exon-sc0000170-1575043694:149236..149719 | Clytia hemisphaerica | exon |
| TCONS_00013553-exon-sc0000170-1491911889:150468..150569 | TCONS_00013553-exon-sc0000170-1491911889:150468..150569 | Clytia hemisphaerica | exon |
| TCONS_00013553-exon-sc0000170-1510915933:150468..150569 | TCONS_00013553-exon-sc0000170-1510915933:150468..150569 | Clytia hemisphaerica | exon |
| TCONS_00013553-exon-sc0000170-1575043694:150468..150569 | TCONS_00013553-exon-sc0000170-1575043694:150468..150569 | Clytia hemisphaerica | exon |
| TCONS_00013553-exon-sc0000170-1491911889:150765..150836 | TCONS_00013553-exon-sc0000170-1491911889:150765..150836 | Clytia hemisphaerica | exon |
| TCONS_00013553-exon-sc0000170-1510915933:150765..150836 | TCONS_00013553-exon-sc0000170-1510915933:150765..150836 | Clytia hemisphaerica | exon |
| TCONS_00013553-exon-sc0000170-1575043694:150765..150836 | TCONS_00013553-exon-sc0000170-1575043694:150765..150836 | Clytia hemisphaerica | exon |
| TCONS_00013553-exon-sc0000170-1491911889:151204..154225 | TCONS_00013553-exon-sc0000170-1491911889:151204..154225 | Clytia hemisphaerica | exon |
| TCONS_00013553-exon-sc0000170-1510915933:151204..154225 | TCONS_00013553-exon-sc0000170-1510915933:151204..154225 | Clytia hemisphaerica | exon |
| TCONS_00013553-exon-sc0000170-1575043694:151204..154225 | TCONS_00013553-exon-sc0000170-1575043694:151204..154225 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000170 | supercontig | sc0000170:149236..154225 + |
Blast
The following BLAST results are available for this feature:
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