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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013555 ID=TCONS_00013555|Name=TCONS_00013555|organism=Clytia hemisphaerica|type=transcript|length=1977bp
NTTATATTTAGATATTACACAAAAGGAGGACATGTGTGCAAGAGAGATTC
AACAGGTAGATTTCTACCAAATCACGATGATGCAGAATTCGATGTTGCTG
CTGCTATGTGCTCTCTGAGTTCCTCCTCTATCATTCCAGTTGGTTATGAA
TATAAAACAGTGCTCAAACCAGGAATAAACAATCTACATTCTTCTGCTCG
CCCTCATCACAAGACTTCATTTGACCTTCTGAAACTTTGGAGGACATATT
TTGAACCATGGAACGAATTTGACTCTGATGATGACAATGAAGATTGTAAA
AGGGATAAGTTCTTTTCCAACTCGAATTCCAAGTATACTATAGACAATTT
TCTCGACCAAGTACGTGGAAAAGCACCATCTAGTTATCGTAATAAACGTA
TGGGTCAGCGATTAAATACAAGCTCAGATGCAGATTACGAGTTTTTCAAC
TCTGAAGATGAAGATTCTTccgatgatgaagatgaagaaatgaaagaaaa
tatgcGCCGACTTGTGGAAAAGGAAAAAGATGATGATGGCTTATTCGATT
CTGGATACTCTGAAGAGGGAACTTTGAAATCAGCAAGTTCTCTCGATCAC
TCTTATTCAAAATCCTTGCAAAGTTTGTGTCGTCCGCAATCAAAACGTGA
AACAAAAGGTGTAGCAGCTTTGCTTAGTTTGGCAGACGCAGCTagcaaag
aattggaaaatatGTCAAAAGATTCTGGTACATCAAGCCCTGAAAAAGAC
ATTACACAGAAAGTGATCTCGCCTGTCAAATGATTTTCACTTCatacttt
ctctttttttttctttcctacaTACCATTCATTAAAGCATGCCATGAACA
AGGAGTTTAGTTTTAAAATGATATCACCAAAAGGATATTTTTATATAGCA
CTTGCactaaaaagaaatattttttcagattGCTGGCTTAGTTTTAAATG
ATTAAGCTGAAAAATGCATttgaaattgaaagaattttggctGAGGAAAT
CGTTTTCTAAGTGGCATTTTCTCaactcaaaatttttttcagttggTGTA
CATTATATTTTTGGTATGCAGTTTCTCATTTTCGGTAGAGGCTAAAGGAa
gggaatattttttgaattaatttttgttatgacagaaaacgaaagtacaT
TATTACCTATATTATTTGAATAATAATTACAAcaacaaaatttacttttt
tttcatagattttgaatttttatagaAAGATATTTACGATCACTAAGTGC
ATTtcctttttacaaattttaattaTCACCATCATTGCTTTATTATTGTT
TTATCATGTGTTCAATAAGGTCCCACTAAATGCTTGTAAAATATGTTTAT
TTAAATCTAGAGCGTTAAAAGCATTTAAAAGAACAGTCAAAGGCAACTGA
CCGTCCCTCTTTATAGATTCATATTAATCCATGATTTCtttgtatacacg
tttttttataagaacaaactatataagaatataaggcttcgatgaccaga
ACTTTAATGTTAAGATGTTTAATGTTAATGTATCAGTCTTTGGCCATAAC
CCTTCTGAACACTTCTGTATTTCgaaattattttattgtttttgtacaaa
ttttcctttttaatttgaattttatcgACGAAGTATTTGTTACTCAATTT
TACTATCAAACAgtttatttcaacttttttgagttaCATACAAGCTAGAG
GCCTTTTTTGGCCGCTAGCTATTTTTGTTCTTGAATTGCTTTGTTACAGC
TCGAGTTGTTATTTCTTCATATAACTTCTTTATCAGGAAGAGTGTTGTCG
TGTTtaggattttcaaaaagttgtaTGAAGCTACTATGGCATCTAAATAT
TCTTTGAGGTCCTATgccaaaaaaaatccaaaagagTTTTGTTTTCTCGT
TCTTGAAAAGATAGTAATTATtatatattgcatttttgaTGATTTGTATC
ATTTACTGTACatcctaaaagaaaaaa Run BLAST on NCBI protein sequence of TCONS_00013555-protein >TCONS_00013555-protein ID=TCONS_00013555-protein|Name=TCONS_00013555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
XIFRYYTKGGHVCKRDSTGRFLPNHDDAEFDVAAAMCSLSSSSIIPVGYE
YKTVLKPGINNLHSSARPHHKTSFDLLKLWRTYFEPWNEFDSDDDNEDCK
RDKFFSNSNSKYTIDNFLDQVRGKAPSSYRNKRMGQRLNTSSDADYEFFN
SEDEDSSDDEDEEMKENMRRLVEKEKDDDGLFDSGYSEEGTLKSASSLDH
SYSKSLQSLCRPQSKRETKGVAALLSLADAASKELENMSKDSGTSSPEKD
ITQKVISPVK Run BLAST on NCBI transcript from alignment at sc0000170:201192..203589+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013555 ID=TCONS_00013555|Name=TCONS_00013555|organism=Clytia hemisphaerica|type=transcript|length=2398bp|location=Sequence derived from alignment at sc0000170:201192..203589+ (Clytia hemisphaerica)
NTTATATTTAGATATTACACAAAAGGAGGACATGTGTGCAAGAGAGATTC
AACAGGTAGATTTCTACCAAATCACGATGATGCAGAATTCGATGTTGCTG
CTGCTATGTGCTCTCTGAGTTCCTCCTCTATCATTCCAGTTGGTAAGACA
TTCATTATTCCAACACCATTCAGATACTTTCCTCAAACTTGAGATTCTCA
CTCTTTCTAACCTATGTACTGTATATCTATGTGATTCCTTATTGCAATAC
ATTTTGGTTAATTTGGTCTACATGACAGATCTAGTTTTCCTAGATTATAA
TGTTGTTATAATTTACCTTATTAATTATTTTAGGTTATGAATATAAAACA
GTGCTCAAACCAGGAATAAACAATCTACATTCTTCTGCTCGCCCTCATCA
CAAGACTTCATTTGACCTTCTGAAACTTTGGAGGACATATTTTGAACCAT
GGAACGAATTTGACTCTGATGATGACAATGAAGATTGTAAAAGGTAAGAG
ATGTCTTTTCATTGATTTGATTTCCTCCACCACATACATTTTAGATGTTC
AGCTATGAAATATGATTCAGAACCTTTTGGAGAACAGAGGAAAAAGTAAA
TGTCAATCAAAGTGGGGTTTTAAAATTGGATAAAGTTTGGCAACAGTTGA
AATAAGGTCAATCTATAGTTAATAAAACTTCATTTGGTTaataaaaatgt
aataaaatttctcttttttccagGGATAAGTTCTTTTCCAACTCGAATTC
CAAGTATACTATAGACAATTTTCTCGACCAAGTACGTGGAAAAGCACCAT
CTAGTTATCGTAATAAACGTATGGGTCAGCGATTAAATACAAGCTCAGAT
GCAGATTACGAGTTTTTCAACTCTGAAGATGAAGATTCTTccgatgatga
agatgaagaaatgaaagaaaatatgcGCCGACTTGTGGAAAAGGAAAAAG
ATGATGATGGCTTATTCGATTCTGGATACTCTGAAGAGGGAACTTTGAAA
TCAGCAAGTTCTCTCGATCACTCTTATTCAAAATCCTTGCAAAGTTTGTG
TCGTCCGCAATCAAAACGTGAAACAAAAGGTGTAGCAGCTTTGCTTAGTT
TGGCAGACGCAGCTagcaaagaattggaaaatatGTCAAAAGATTCTGGT
ACATCAAGCCCTGAAAAAGACATTACACAGAAAGTGATCTCGCCTGTCAA
ATGATTTTCACTTCatactttctctttttttttctttcctacaTACCATT
CATTAAAGCATGCCATGAACAAGGAGTTTAGTTTTAAAATGATATCACCA
AAAGGATATTTTTATATAGCACTTGCactaaaaagaaatattttttcaga
ttGCTGGCTTAGTTTTAAATGATTAAGCTGAAAAATGCATttgaaattga
aagaattttggctGAGGAAATCGTTTTCTAAGTGGCATTTTCTCaactca
aaatttttttcagttggTGTACATTATATTTTTGGTATGCAGTTTCTCAT
TTTCGGTAGAGGCTAAAGGAagggaatattttttgaattaatttttgtta
tgacagaaaacgaaagtacaTTATTACCTATATTATTTGAATAATAATTA
CAAcaacaaaatttacttttttttcatagattttgaatttttatagaAAG
ATATTTACGATCACTAAGTGCATTtcctttttacaaattttaattaTCAC
CATCATTGCTTTATTATTGTTTTATCATGTGTTCAATAAGGTCCCACTAA
ATGCTTGTAAAATATGTTTATTTAAATCTAGAGCGTTAAAAGCATTTAAA
AGAACAGTCAAAGGCAACTGACCGTCCCTCTTTATAGATTCATATTAATC
CATGATTTCtttgtatacacgtttttttataagaacaaactatataagaa
tataaggcttcgatgaccagaACTTTAATGTTAAGATGTTTAATGTTAAT
GTATCAGTCTTTGGCCATAACCCTTCTGAACACTTCTGTATTTCgaaatt
attttattgtttttgtacaaattttcctttttaatttgaattttatcgAC
GAAGTATTTGTTACTCAATTTTACTATCAAACAgtttatttcaacttttt
tgagttaCATACAAGCTAGAGGCCTTTTTTGGCCGCTAGCTATTTTTGTT
CTTGAATTGCTTTGTTACAGCTCGAGTTGTTATTTCTTCATATAACTTCT
TTATCAGGAAGAGTGTTGTCGTGTTtaggattttcaaaaagttgtaTGAA
GCTACTATGGCATCTAAATATTCTTTGAGGTCCTATgccaaaaaaaatcc
aaaagagTTTTGTTTTCTCGTTCTTGAAAAGATAGTAATTATtatatatt
gcatttttgaTGATTTGTATCATTTACTGTACatcctaaaagaaaaaa Coding sequence (CDS) from alignment at sc0000170:201192..203589+ >TCONS_00013555 ID=TCONS_00013555|Name=TCONS_00013555|organism=Clytia hemisphaerica|type=CDS|length=2349bp|location=Sequence derived from alignment at sc0000170:201192..203589+ (Clytia hemisphaerica)
NTTATATTTAGATATTACACAAAAGGAGGACATGTGTGCAAGAGAGATTC
AACAGGTAGATTTCTACCAAATCACGATGATGCAGAATTCGATGTTGCTG
CTGCTATGTGCTCTCTGAGTTCCTCCTCTATCATTCCAGTTGGTTATGAA
TATAAAACAGTGCTCAAACCAGGAATAAACAATCTACATTCTTCTGCTCG
CCCTCATCACAAGACTTCATTTGACCTTCTGAAACTTTGGAGGACATATT
TTGAACCATGGAACGAATTTGACTCTGATGATGACAATGAAGATTGTAAA
AGGGATAAGTTCTTTTCCAACTCGAATTCCAAGTATACTATAGACAATTT
TCTCGACCAAGTACGTGGAAAAGCACCATCTAGTTATCGTAATAAACGTA
TGGGTCAGCGATTAAATACAAGCTCAGATGCAGATTACGAGTTTTTCAAC
TCTGAAGATGAAGATTCTTccgatgatgaagatgaagaaatgaaagaaaa
tatgcGCCGACTTGTGGAAAAGGAAAAAGATGATGATGGCTTATTCGATT
CTGGATACTCTGAAGAGGGAACTTTGAAATCAGCAAGTTCTCTCGATCAC
TCTTATTCAAAATCCTTGCAAAGTTTGTGTCGTCCGCAATCAAAACGTGA
AACAAAAGGTGTAGCAGCTTTGCTTAGTTTGGCAGACGCAGCTagcaaag
aattggaaaatatGTCAAAAGATTCTGGTACATCAAGCCCTGAAAAAGAC
ATTACACAGAAAGTGATCTCGCCTGTCAAATGANTTATATTTAGATATTA
CACAAAAGGAGGACATGTGTGCAAGAGAGATTCAACAGGTAGATTTCTAC
CAAATCACGATGATGCAGAATTCGATGTTGCTGCTGCTATGTGCTCTCTG
AGTTCCTCCTCTATCATTCCAGTTGGTTATGAATATAAAACAGTGCTCAA
ACCAGGAATAAACAATCTACATTCTTCTGCTCGCCCTCATCACAAGACTT
CATTTGACCTTCTGAAACTTTGGAGGACATATTTTGAACCATGGAACGAA
TTTGACTCTGATGATGACAATGAAGATTGTAAAAGGGATAAGTTCTTTTC
CAACTCGAATTCCAAGTATACTATAGACAATTTTCTCGACCAAGTACGTG
GAAAAGCACCATCTAGTTATCGTAATAAACGTATGGGTCAGCGATTAAAT
ACAAGCTCAGATGCAGATTACGAGTTTTTCAACTCTGAAGATGAAGATTC
TTccgatgatgaagatgaagaaatgaaagaaaatatgcGCCGACTTGTGG
AAAAGGAAAAAGATGATGATGGCTTATTCGATTCTGGATACTCTGAAGAG
GGAACTTTGAAATCAGCAAGTTCTCTCGATCACTCTTATTCAAAATCCTT
GCAAAGTTTGTGTCGTCCGCAATCAAAACGTGAAACAAAAGGTGTAGCAG
CTTTGCTTAGTTTGGCAGACGCAGCTagcaaagaattggaaaatatGTCA
AAAGATTCTGGTACATCAAGCCCTGAAAAAGACATTACACAGAAAGTGAT
CTCGCCTGTCAAATGANTTATATTTAGATATTACACAAAAGGAGGACATG
TGTGCAAGAGAGATTCAACAGGTAGATTTCTACCAAATCACGATGATGCA
GAATTCGATGTTGCTGCTGCTATGTGCTCTCTGAGTTCCTCCTCTATCAT
TCCAGTTGGTTATGAATATAAAACAGTGCTCAAACCAGGAATAAACAATC
TACATTCTTCTGCTCGCCCTCATCACAAGACTTCATTTGACCTTCTGAAA
CTTTGGAGGACATATTTTGAACCATGGAACGAATTTGACTCTGATGATGA
CAATGAAGATTGTAAAAGGGATAAGTTCTTTTCCAACTCGAATTCCAAGT
ATACTATAGACAATTTTCTCGACCAAGTACGTGGAAAAGCACCATCTAGT
TATCGTAATAAACGTATGGGTCAGCGATTAAATACAAGCTCAGATGCAGA
TTACGAGTTTTTCAACTCTGAAGATGAAGATTCTTccgatgatgaagatg
aagaaatgaaagaaaatatgcGCCGACTTGTGGAAAAGGAAAAAGATGAT
GATGGCTTATTCGATTCTGGATACTCTGAAGAGGGAACTTTGAAATCAGC
AAGTTCTCTCGATCACTCTTATTCAAAATCCTTGCAAAGTTTGTGTCGTC
CGCAATCAAAACGTGAAACAAAAGGTGTAGCAGCTTTGCTTAGTTTGGCA
GACGCAGCTagcaaagaattggaaaatatGTCAAAAGATTCTGGTACATC
AAGCCCTGAAAAAGACATTACACAGAAAGTGATCTCGCCTGTCAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013555-exon-sc0000170-1491911889:201192..201333 | TCONS_00013555-exon-sc0000170-1491911889:201192..201333 | Clytia hemisphaerica | exon |
| TCONS_00013555-exon-sc0000170-1510915933:201192..201333 | TCONS_00013555-exon-sc0000170-1510915933:201192..201333 | Clytia hemisphaerica | exon |
| TCONS_00013555-exon-sc0000170-1575043694:201192..201333 | TCONS_00013555-exon-sc0000170-1575043694:201192..201333 | Clytia hemisphaerica | exon |
| TCONS_00013555-exon-sc0000170-1491911889:201525..201684 | TCONS_00013555-exon-sc0000170-1491911889:201525..201684 | Clytia hemisphaerica | exon |
| TCONS_00013555-exon-sc0000170-1510915933:201525..201684 | TCONS_00013555-exon-sc0000170-1510915933:201525..201684 | Clytia hemisphaerica | exon |
| TCONS_00013555-exon-sc0000170-1575043694:201525..201684 | TCONS_00013555-exon-sc0000170-1575043694:201525..201684 | Clytia hemisphaerica | exon |
| TCONS_00013555-exon-sc0000170-1491911889:201915..203589 | TCONS_00013555-exon-sc0000170-1491911889:201915..203589 | Clytia hemisphaerica | exon |
| TCONS_00013555-exon-sc0000170-1510915933:201915..203589 | TCONS_00013555-exon-sc0000170-1510915933:201915..203589 | Clytia hemisphaerica | exon |
| TCONS_00013555-exon-sc0000170-1575043694:201915..203589 | TCONS_00013555-exon-sc0000170-1575043694:201915..203589 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000170 | supercontig | sc0000170:201192..203589 + |
Blast
The following BLAST results are available for this feature:
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