TCONS_00013576 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013576
Unique NameTCONS_00013576
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1886

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013576 ID=TCONS_00013576|Name=TCONS_00013576|organism=Clytia hemisphaerica|type=transcript|length=1886bp
CGAAAGTGGAACAAGTTTCTGAACCAACGAAAGTGGAACAAGTTTTTGAA
CCAACAAAAGTGGAACAAGCTTCCGAACCAACGAAAGTGGAACAAGTTTC
TGAACCAACGAAAGTTGACCAAGTTTCCGAACCAACGAAAGTTGAACAAG
TTTCTGAACCAACGAAAGTGGAACAAGTTTCTGAACCAACAAAAGTCGAG
CAGGTTTCTGAACCAACAGAAGCTGAACAAGTTTTTGAACCAACGAAAGT
CGAACAAGTTTCCGAACCGACGAAAGTGGAACAAGTTTCCGAACCCTCAG
AAGTTGAACAAGTTTCTGAACCAACGAAAGTGGAACATGCTTCCAAACCA
ACGGAAGTCGAAAAAGTTTCTGAACCATCGAAAGacgaaaaagttttcaa
accaTCGAAAGTCGAACAAGTTTCCGAACCAACGGAAGTCGAGCAGGTTT
CTGAACCAACAGAAGTTGAACAAGTTTTTGAACCAACGAAAGTGAAACAC
GTTTCTGAACCTACGAAAGTGGAACAAGTTTCTGAACCAGCAAAAGTCGA
ACAAATTTCCGAACCAACAAAAGTCGAACAAGTTTCTGAACCAACAGAAG
TTGAACAAGTTTCCGAACCAACGATAGAGGAACACGTTTCCGAACCGTCA
CAAGTTGAACAAGTTTCTAAACCATCGAAAGTCGAACAAGTTTCTGAACC
AGCAAAAGTCGAACAAGTTTCTGAACCAACGAAAGTCGAACAAGTTTCCG
AACTAACGGAAGTCAAACAAGTTTCCGAACCAACGAAAGTTGAAAATGTT
TCCAAACCAACGGATATCAAACAAGTTTCTGAATCAACGGAAGTTGAACA
AGTTTCTGAAGCAACGATAGAACAATTTTCCGAACCAACGGAAGAGGAAC
AAGTTTCCAAAACAACGGAAGTGGAACAACTTTCTGACCCAACGAAAGTG
GATCAAGTTTCCGAAAGAATGGAAGTTTCTTACTCAACGGAACCAACGAC
ATCAGAGCAAGTTTTTGGACCAACGACAGCAATAATCGACACTGACAGCT
TTTCGATAGAAGACATTCTTTCTTTGAAGGAATGCATCGTTACGATTGAC
GAAAATATTTCGAATTTACCAGAAGTGAAAGGGAAAATTATCCACCTTCA
GGATTTGAAGAACAAAGTTTCTGGTATGGTATCAAAAGAGGCTGACGATT
TGCTTGAAGTTGTTGAAGAAAAGATTGAGATTATGAGGGAAATCGAATCT
GATTTCATGGGACTCGAAGAATCTATCACATTGTTCGATCAGCAATCAAA
GTCCTTCATGCGTGCTCAACAAAGTCTTGATAAACCATTCGTACAGCAAG
CTAAGATTCAGAAAGATTTAGTATCCACATTAGAGCATATCGATTCTCAA
CAATCCATGTTAATGCAATACTTATCGGAAGAAGGGCAAGAGCAAGTCTA
CCAACGTTTAGACTCCGTGCAAGAAATTTATTTGAATATCACCGAAAAAT
TCACTGATTATGTAACAGAGATGGCTTCTAAATGTTTCTCTGAGATGGTG
ATTCACCATATTGTGTTGCAAGAACTGATCAAGCAATTGTTGGAGTATAA
AGATGGAAATTTGGTCGATCTTAATATCCAGCTCTTACTCCAAGTTGCTC
GTCAGTATTTGATTCGCTGTGAAGACGAAATTCTGCACCAAGCATTTTAC
ATCCAACAAAATCATTTCTTCGAGTGTAATGTCTTCGATCAAAAAGTCGT
TCATTTCCAACAGATTGTGGAGAAAGTGAAAAGAGAATTGATTGGCGTCA
TGAAAGTTCATTTGACGGGTGTTGAATTGTTGGTGGATTTTGTTGAAGCT
TTTCATGATGAGTTGTTGAGTCTGGAAGATTCCTAT
Run BLAST on NCBI

transcript from alignment at sc0000170:319996..323440+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013576 ID=TCONS_00013576|Name=TCONS_00013576|organism=Clytia hemisphaerica|type=transcript|length=3445bp|location=Sequence derived from alignment at sc0000170:319996..323440+ (Clytia hemisphaerica)
CGAAAGTGGAACAAGTTTCTGAACCAACGAAAGTGGAACAAGTTTTTGAA
CCAACAAAAGTGGAACAAGCTTCCGAACCAACGAAAGTGGAACAAGTTTC
TGAACCAACGAAAGTTGACCAAGTTTCCGAACCAACGAAAGTTGAACAAG
TTTCTGAACCAACGAAAGTGGAACAAGTTTCTGAACCAACAAAAGTCGAG
CAGGTTTCTGAACCAACAGAAGCTGAACAAGTTTTTGAACCAACGAAAGT
CGAACAAGTTTCCGAACCGACGAAAGTGGAACAAGTTTCCGAACCCTCAG
AAGTTGAACAAGTTTCTGAACCAACGAAAGTGGAACATGCTTCCAAACCA
ACGGAAGTCGAAAAAGTTTCTGAACCATCGAAAGacgaaaaagttttcaa
accaTCGAAAGTCGAACAAGTTTCCGAACCAACGGAAGTCGAGCAGGTTT
CTGAACCAACAGAAGTTGAACAAGTTTTTGAACCAACGAAAGTGAAACAC
GTTTCTGAACCTACGAAAGTGGAACAAGTTTCTGAACCAGCAAAAGTCGA
ACAAATTTCCGAACCAACAAAAGTCGAACAAGTTTCTGAACCAACAGAAG
TTGAACAAGTTTCCGAACCAACGATAGAGGAACACGTTTCCGAACCGTCA
CAAGTTGAACAAGTTTCTAAACCATCGAAAGTCGAACAAGTTTCTGAACC
AACGAAAGTTGAACACGTTTCTGTACCAACAAAAGTCGAACAAGTTTTCG
AACCAACGGAAGTTGAACATGTTTCTGAACCAACGAAAGTTGAACAAGTT
TCCGAACCATTACAAGTCGAACAGGTTTCTGAACCAACGGAAGATGAACA
TGTTTCCAAACCAACGGAAGTCGAAAAAGTTTCTGAACCATCGAAAGacg
aaaaagttttcaaaccaTCGAAAGTCGAACAAGTTTTCGAACAAACGGAA
GTCGATCAAGTTTCTGAACCAACGGAGGTCGAACAAGTTTCTGAACCAAC
GAAAGTCGAACAAGTTTCTAAACCAACGAAAGTCGAACAAGTTTCTGCAC
GAACGGAGGTCGAACAAGTTTCTGAACCAGCAAAAGTCGAACAAGTTTCT
GAACCAACGAAAGTCGAACAAGTTTCCGAACTAACGGAAGTCAAACAAGT
TTCCGAACCAACGAAAGTTGAAAATGTTTCCAAACCAACGGATATCAAAC
AAGTTTCTGAATCAACGGAAGTTGAACAAGTTTCTGAAGCAACGATAGAA
CAATTTTCCGAACCAACGGAAGAGGAACAAGTTTCCAAAACAACGGAAGT
GGAACAACTTTCTGACCCAACGAAAGTGGATCAAGTTTCCGAAAGAATGG
AAGTTTCTTACTCAACGGAACCAACGACATCAGAGCAAGTTTTTGGACCA
ACGACAGCAATAATCGACACTGACAGCTTTTCGATAGAAGACATTCTTTC
TTTGAAGGAATGCATCGTTACGATTGACGAAAATATTTCGAATTTACCAG
AAGTGAAAGGGAAAATTATCCACCTTCAGGTATTATTCTCCTTTGATTCT
TAATTAATAGAAATGATTATTGTAAGAGTTTTCGAAAATAGCCATACAGA
ATCTAGGCAAGTAAAGCAATTTCGACATCTACCATATAAATGAGTTTTCC
GACCCTTGATATCTAGACCATAGTTTCAAGTGACTTAGATAAAAAACATC
GGCTTTCAAATCACTAATAAATGACGATCAATTTCAACATAGCTTTCCTT
TCTGTTTTTTTGTAGGATTTGAAGAACAAAGTTTCTGGTATGGTATCAAA
AGAGGCTGACGATTTGCTTGAAGTTGTTGAAGAAAAGATTGAGATTATGA
GGGAAATCGAATCTGATTTCATGGGACTCGAAGAATCTATCACATTGTTC
GATCAGCAATCAAAGTCCTTCATGCGTGCTCAACAAAGTCTTGATAAACC
ATTCGTACAGCAAGCTAAGGTACTCCACCAGGTTCCCAATCAACGGCTCC
CATCCCTCTGTTTGTTAATGTTCTATATTTTATACCCAATCCCTAACGAA
CGTAGTCCCTCACAAACACCTGCAttaatttgatgtatttttaagaattt
ggcTGTATTCTGTGGTATCAGTAAATATAACGTTTTACTAATCGTTGACT
TTCATGTACCGGGTATGATAAAAAAATGTccctaaatttgaaaaaatgtc
aaatatgcGTAAAAGATAACGCTTAGGTCTTAAGAATAAATGAATTGTTT
TTAACGATTGTGAGTGACCTCTATAATGCGGATTCCTCTTTTTTAGATTC
AGAAAGATTTAGTATCCACATTAGAGCATATCGATTCTCAACAATCCATG
TTAATGCAATACTTATCGGAAGAAGGGCAAGAGCAAGTCTACCAACGTTT
AGACTCCGTGCAAGAAATTTATTTGAATATCACCGAAAAATTCACTGATT
ATGTAACAGAGATGGCTTCTAAATGTTTCTCTGAGATGGTGATTCACCAT
ATTGTGTTGCAAGAACTGATCAAGCAATTGTTGGAGTATAAAGATGGAAA
TTTGGTCGATCTTAATATCCAGGTACGTTTGGTGGAACTTTAGAGAacat
aattttacttttttgttaagTTTTAGAGTCTACGGTCACTCTGTGATCAC
ATTAGTTAAGTAGAATGAGTATGCTCAACTTGTGGTTGTCTGTGGAGGTA
GGAGTGATTTGGTATACCCTTTTTACGCTAGATTTGAGAGATCCGAAAGT
GAGGGGAACACTTCAGCTCCTACCTAAATCTCATTCTCGTGTTAGTGCTC
GGGAACCAGACCGGACCCGACTTATATATTTTAAGACCAATGCTTTACCC
ACTGAGTTACACGTGATGTCGGAGGGCTGAGGTACtgcaactctctctaa
ttcgaacctctattattctaatctctctgtaattcgaactaaagcaTTGA
TCTGATCAGCTGGAAAGTTGTATAATAAacactctctgtaattcgaatct
ttatcTTATTCAAAGGAAATTTTAGgtctcttgaagatcgaattggaGAG
TTAAGTCGGCTGTACTTCGAACATCTTGAAAGTTTGTTAAGCGACAACTG
GTGCAATTGGAAGTTTGGGTTTTATCCCTTAGAAATTAAAACTCCGGTTT
TTTATTCTCGTTTCATTTTCTCGTTTCATTTTCCTCACAGCTCTTACTCC
AAGTTGCTCGTCAGTATTTGATTCGCTGTGAAGACGAAATTCTGCACCAA
GCATTTTACATCCAACAAAATCATTTCTTCGAGTGTAATGTCTTCGATCA
AAAAGTCGTTCATTTCCAACAGATTGTGGAGAAAGTGAAAAGAGAATTGA
TTGGCGTCATGAAAGTTCATTTGACGGGTGTTGAATTGTTGGTGGATTTT
GTTGAAGCTTTTCATGATGAGTTGTTGAGTCTGGAAGATTCCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007584XLOC_007584Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013576-exon-sc0000170-1491911889:319996..320675TCONS_00013576-exon-sc0000170-1491911889:319996..320675Clytia hemisphaericaexon
TCONS_00013576-exon-sc0000170-1510915933:319996..320675TCONS_00013576-exon-sc0000170-1510915933:319996..320675Clytia hemisphaericaexon
TCONS_00013576-exon-sc0000170-1575043694:319996..320675TCONS_00013576-exon-sc0000170-1575043694:319996..320675Clytia hemisphaericaexon
TCONS_00013576-exon-sc0000170-1491911889:321054..321524TCONS_00013576-exon-sc0000170-1491911889:321054..321524Clytia hemisphaericaexon
TCONS_00013576-exon-sc0000170-1510915933:321054..321524TCONS_00013576-exon-sc0000170-1510915933:321054..321524Clytia hemisphaericaexon
TCONS_00013576-exon-sc0000170-1575043694:321054..321524TCONS_00013576-exon-sc0000170-1575043694:321054..321524Clytia hemisphaericaexon
TCONS_00013576-exon-sc0000170-1491911889:321761..321964TCONS_00013576-exon-sc0000170-1491911889:321761..321964Clytia hemisphaericaexon
TCONS_00013576-exon-sc0000170-1510915933:321761..321964TCONS_00013576-exon-sc0000170-1510915933:321761..321964Clytia hemisphaericaexon
TCONS_00013576-exon-sc0000170-1575043694:321761..321964TCONS_00013576-exon-sc0000170-1575043694:321761..321964Clytia hemisphaericaexon
TCONS_00013576-exon-sc0000170-1491911889:322292..322567TCONS_00013576-exon-sc0000170-1491911889:322292..322567Clytia hemisphaericaexon
TCONS_00013576-exon-sc0000170-1510915933:322292..322567TCONS_00013576-exon-sc0000170-1510915933:322292..322567Clytia hemisphaericaexon
TCONS_00013576-exon-sc0000170-1575043694:322292..322567TCONS_00013576-exon-sc0000170-1575043694:322292..322567Clytia hemisphaericaexon
TCONS_00013576-exon-sc0000170-1491911889:323186..323440TCONS_00013576-exon-sc0000170-1491911889:323186..323440Clytia hemisphaericaexon
TCONS_00013576-exon-sc0000170-1510915933:323186..323440TCONS_00013576-exon-sc0000170-1510915933:323186..323440Clytia hemisphaericaexon
TCONS_00013576-exon-sc0000170-1575043694:323186..323440TCONS_00013576-exon-sc0000170-1575043694:323186..323440Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000170supercontigsc0000170:319996..323440 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.114965	0	0	0	0.727448	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4.78664e-07	0.176547	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top