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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013583 ID=TCONS_00013583|Name=TCONS_00013583|organism=Clytia hemisphaerica|type=transcript|length=1299bpRun BLAST on NCBI transcript from alignment at sc0000170:410983..421248+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013583 ID=TCONS_00013583|Name=TCONS_00013583|organism=Clytia hemisphaerica|type=transcript|length=10266bp|location=Sequence derived from alignment at sc0000170:410983..421248+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00013583 vs. Swiss-Prot (Human)
Match: PKHM2 (Pleckstrin homology domain-containing family M member 2 OS=Homo sapiens GN=PLEKHM2 PE=1 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 1.456e-20 Identity = 55/164 (33.54%), Postives = 83/164 (50.61%), Query Frame = 2
Query: 98 QAGLFKDDILRGVSLSVKNLQHQNADSIAIHPKKVFEITKHNPHFRNLLNYLDMAFSFGLKDSKKGYWPLVKKVVHSSVLEIIEKHPVVSTELHKGYIWLYLTFVENSMDSYLRMILVEKKQVKNFYKNFSILRDEERCEILLNLVAGVEALTFAIDIKDPYLD 589
+ G KD IL +SLSVK LQ A ++ I H+ + L +LD A +GL+D GYW LV ++ IE V+T L + WLYL ENS++SYLR+ + +Y +++ + + L LV+G+E + F +D+ PYLD
Sbjct: 2 EPGEVKDRILENISLSVKKLQSY----FAACEDEIPAIRNHDKVLQRLCEHLDHALLYGLQDLSSGYWVLVVHFTRREAIKQIEVLQHVATNLGRSRAWLYLALNENSLESYLRLFQENLGLLHKYYVKNALVCSHDHLTLFLTLVSGLEFIRFELDLDAPYLD 161 The following BLAST results are available for this feature:
BLAST of TCONS_00013583 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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