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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013618 ID=TCONS_00013618|Name=TCONS_00013618|organism=Clytia hemisphaerica|type=transcript|length=1039bp
CATTATCTGGAAGCTTAAAAGATAAAGAATGTAATCATAATGATGGCCGA
TCCGAAGATTTCAATCGAACTAAGTAACGAAAAACAAGAAATCTTTTATC
CTGGTGAAAAGATTAGTGGGCATGTGGTTATTGAGTTGGATAAACCATTG
GAGACAAAAAACGTCTGTTTGACTTTTGGAGCACTTATTCCTGGTCGTTC
ATGTTTCTGTCCTGGTGAAAATATCCCAATAGAGATGATGATTGAAAACA
ATTCATCCAAACTTGTCACAGAAGCGAGATTACACCATTGCTAAATCGAA
AGTATTATTCAAAGATTCAACTTATTTGCGCTATATCGGAGAAGGACTGA
CCGCTCCTGAAAATACATCTCCAACGAATTGGCGattgaaaatcatcaaa
gtaaGATATCACGTTGAAGTGAGGATTGATTTGTCTTGGACTACAAATGA
ACCATGCATTGAAATACCGATCATTATCGGGACAGTTCCATTGGGAATTA
AGTCAAAAgatataaatcaaaacaattggTTTTGACTGCTATTCGTCGAA
ACGAGGTTACAGTGTAAGAATTCAGCCACAAAATTGGCCTTTTCTCTATC
AAATTGTTGGAAACATATTATAAAGttgaataatttaaatttaaaaaaag
ctgctttaggcgtacaagctttcgcgagcagaaactttcgcgattttcgc
gaattttggccctttacgcgaaagtaaatgtctttaaaaattctaggaag
ggctattcgcgaaagtttaggctcgcgaaaaattcttgacaaaatagaaa
acctgtaaacttcaaactttgaataaaatgtaacttttatggcacttttt
agcctgctaaaagactaataagtcaaaggacaaatgtttcaagctaatcc
aagaagtattcgtccctctaagccattttttcatgtgaaaattctcaatt
ttacgtcttggttcgcgaaagtttatgctcgcaaaaaatatttttccgtt
aaattcgcgaaagtaaaagtcgtgaatttcgcgattttt Run BLAST on NCBI transcript from alignment at sc0000170:437395..442352- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013618 ID=TCONS_00013618|Name=TCONS_00013618|organism=Clytia hemisphaerica|type=transcript|length=4958bp|location=Sequence derived from alignment at sc0000170:437395..442352- (Clytia hemisphaerica)
CATTATCTGGAAGCTTAAAAGGTATGTGATATTCGTTTTCGTTTTTGTTT
ATGTTTTTTTTTGTATTAGTTCCTCCGCGGTTTCTTTAAAGCCAAATTCA
AGTCTTCGTAATTCGATTCAATAATTATCCATCCGTTCTCAGAAGCAGTT
CTGATTGATTGAGGTTCAAAATTTAAGACAACGAGTTTTGCTTCTATTAG
ATATTGACGATGGCAACCCGAAGAGGAAAGTTCATAACTTTTGAACCATA
TTCAGAGAATTGCCAATATGGACAAAATAATCAAACTCACACACGAGGAT
GTGTTGTTTGTTATAAATCTTACTTTTTTCATATAATTTGTTCGTTCCTA
GATAGATAAAGAATGTAATCATAATGATGGCCGATCCGAAGATTTCAATC
GAACTAAGTAACGAAAAACAAGAAATCTTTTATCCTGGTGAAAAGATTAG
TGGGCATGTGGTTATTGAGTTGGATAAACCATTGGAGACAAAAAACGTCT
GTTTGACTTTTGGAGGTTTGTTGTTCTATCCTGGTTGAGGTTAGGCTGCT
TGCATTCACTAACGGATTCGTGCTCCTTATAGAGGATGCTTAATAAGCTA
TATTTCATTTGTCCAGAGATTTGCCGCCTTTAGCTGATATACATTCTATT
GAAAACGTTCGAAACGATCGTTTTTGCGCGCACATCAATGCCAATCAAAT
CATTAACTTGCCAAGATTTTGTAAAATACATCGAAATAAAAAAAAACCGA
ACCAGAAAGCGGCTGGTAGATTATTAAGCAGACCTATACTACCTGGGGTT
TTGTAGAGGTCTGCGATTTAGACTAAGTTGAGGTCTCCGTACACGGAAAA
CCGTGAATTTTCTGCCCCTGAATTTTCAATCTTAGGCAAGTACATACTGT
ATTAAATTAACTAAACACCCCTCTCTCACAGCCCTGGTGGAAGTTTTTTG
TCTGTTGGGATAGAAATTTCTATTGAAATCCTAATGGGGACAGAAATTAT
ATTGTTCCAAGGGGGATGGTTTTGGAGTACAATTTTCAAACATTGAAATT
AGACAGTCAACTTCCTAGCCTGGATATCCAAGCTCAAAATTTTAGAAAAA
ATAAAATTTACCTCAATATACAAAGTTCTAAAATTATAGAGCTTGGTCTC
CCTAGAGAAAGAAAGTGCAAACCCATGTTTCTGAAACTTTTCTAGTCAAC
CCAGGTCAGCGAAACAGAAATTAATAAAAAAGCAGCCTTGCAAGATCTAA
AACCATTTAAAACATCCAAAGATTACACCAGAGTCCATAAACAAGTTTGC
ATGCATTATCATGACCAACCACGTTTTCTTGAAAAATGAACTTGCCTCTG
TTTTCTTCTGTTTCGTGTTTTCATGTAAAAGAAAGCTGTATCTTTACTAG
AAACTGGAGGACTATCCTATTTTTGTTTCAGAATTGCTCCACGCCGTGTA
GATTGGTCCGTACGGCTTTAGTGAAGTGAGTGCAAGCAAGCGGACTGCAT
TCTCATACGAGAATGCAAAACGCTCTAGGGAGACCAGGCTGTAAACCAGA
ACAAAAAAATATCAAAAACTAGACTGAAATAGTTTACAGCCTGGATATCC
AGGCTATCAACTTCCCAGTGGGGCTGAAATTGTATTTTTTTCATTTTCAG
GAAAAGGCGACGTCGTGTGGGTGGAAACAATCGCTGATGACATTGAAACT
TACCACGGCAAAGAAGAAATTTTTATGTTCGAACATATCTTCTACGGCCA
GAGAAAAAGTAGCTCTAGAGTAGTTCTACCGACCGGGAGAACAAGTTACT
CTTTTGTTTTCAGTGTACCAAATGGTATCCCAAGTTCTTATACTGGAATA
AAAATTGGATTTATTCGATATGAAATGGAAGGTATTAGTAATTAATCCAC
ATTCGATTAGAGTTTGATCAGTATCTTTTCAGTAGCATAAGGGAAATCTA
ATTTAATAATAGACGATATCGGCTTAACGAAATTCTTCCCGAATGATTAC
CCATGATGCATTGCGCAAAAAAATTCAGTAAGTCAATATTGTCCGTGAAT
TTTTTTGCGCAATGCATCATGGGTAATCATTCGGGGAGGAATTCGTAAAG
CCGATATCGTCTATTAGATTAATAATTTCTCCTCGGGATGAATAACTCGT
TGTATTTCGGGAAGTCTCAAACATATAACTGACTCAACCAAATTTCTCAG
CCATCTAGCATAATTTGTTTGAACCCCTTGGTGGTGGAACCCTTGGTGGT
GGACCCTTGGTGGTGGAACCCTTGGTGGTGGAACCCTTGGTGGTGGAACC
CTTGGTGGTGGAACCCTTTTCTCTTAAGTTAGAGAAATGGAAATTTCACT
TCGGACATAATTTTTTTCATTTACAAACGTCTTACTTTTGTATCTGAATC
CTTTTTTAAATGCATAATTTTTACAAAGTTAGAGTGCACTTCCTCTCATT
TCAACCCTTACGGTGCACTTTGGGAATAGTGTTTGAAAACAAGGTCTGCA
AGACACATTTTCGACCGTAGCCGCCAGGTGCCGCGCGGACCCTAAAACCG
TCCCAGTCTTTTTTCACACCTAAAAATAATAGAAAAAATGTTTAAAAAAA
GGATTGGATTGAGTTTAGGGTGGTAAATTGAATAATAAAGTGGCACGCGC
CTGACCGCGCGACTACGGTCGAAAAGGTATCCAATGATTATTCATTATTC
ATCTAAAGAAGAGTGTCTTTATTTTTTTCTCTTCTTCCTCCTTCACAATA
GCTCAAATCACTTTAGCTTACAAATCAAAAATCAAATTCAAGCGANATCT
TCTTCTTCCTTCTTGTAGCTCAAATCACTTTAGCTTACAAATCAAATATC
AAAGTCAAGCGAACCATACACATTCATGAAGTGATTGACTGCAATCTTCC
ACGTTACCTTAGTGGTATTGGGATGAGTTGTACTGAAGATGTTGGCTTTT
GTTGTTACAAATATGGCCCTATTCGCATGTCAGGTATTTTTTAATCAAAT
TGAAGTTATGTACCAGCTGCCACCAAATAGGCCCGGGGGTACTACCCTTG
CCACCCCGAAAGGGGTGTATCGCCGAGGTTAGAAAAATGGACCCTACGTG
GGATTCGTTTTTGTGAAAATTTTGCCAAAATTTGAAAAGAAGTGACCCTG
ATTTGGACTGAAATTCCAAAGTGTTCTAGGAATTTTCCACTTTTTATCCA
AATTGCCCCCGCCCCCACCCCAAAATAGGTACCCTGACCTCGTATTCTCA
TGTTATTATAATGTTTTGATCGCAGGATTATTTAGTTGAACAATACATAC
CAGTTGGCCAAATGAAAAAGATTAAATACTTAGTATTTACAGGGATGATC
AGGTGTTTTAAGGTTGTTGGCCTAAATTCCTCATTCAGTTCTGAGCGAAA
CTTTTTTCGGCAAATTTTCTTACAAAAATTAAAATTGATTATTGAAAATT
CAACTGAGGAAAAAAGTTTTGTCTTTCTTCAAATAGCACTTATTCCTGGT
CGTTCATGTTTCTGTCCTGGTGAAAATATCCCAATAGAGATGATGATTGA
AAACAATTCATCCAAACTTGTCACAGAAGCGAGATTACACCATTGCTAAA
TCGAAAGGTAATATGAAAGAGATTTTTTCTAGAGGTTCAGTCCAAGTAAC
GTAGGTTTCACGATAACATGGACAGTTCCAGAATATCTATGTGCGTATTA
CCTGANCACAATCAAACTCATCCAAACGGCGATCTATCGGGAACATCACG
AACATCACAAAGACGGACCGATAACAGTCCGAGATTACACCATTGCTAAA
TCGAAAGGTAATATGAAAGAGATTTTTTCTAGAGGTTCAGTCCAAGTAAC
GTAGGTTTCACGATAACATGGACAGTTCCAGAATATCTATGTGCGTATTA
CCTGAAACAAGCTTTTTATCTAAGAATTTGCTATTTACAAGCTGAAGAGC
AATTTGATAAGAACACAAGGCTGAAAATTGGCCAAAACCTAAGAACAAAT
TAAGAACAGGGTGAGCCTCAGATTTCAGAAATTATTAAGAAAGTACTGAT
TGAAGTAATGAAGTTTTTAAACCCATTTTTAGATTTTAAGTAAAGAAACT
GAGCGTATTAAGAATATTGTAAGAACTGCCTGAAAATTTCAAAAAATTAA
AAAAAGCCCAGCCTGTATTTCCACGAGCTTTTCTTATCTTATCGTCTAAT
TTTTGATTTGTTGATTTCTAGTATTATTCAAAGATTCAACTTATTTGCGC
TATATCGGAGAAGGACTGACCGCTCCTGAAAATACATCTCCAACGAATTG
GCGATTGAAAATCATCAAAGTAAGATATCACGTTGAAGTGAGGATTGATT
TGTCTTGGACTACAAATGAACCATGCATTGAAATACCGATCATTATCGGG
ACAGTTCCATTGGGAATTAAGTCAAAAGATATAAATCAAAACAATTGGTT
TTGACTGCTATTCGTCGAAACGAGGTTACAGTGTAAGAATTCAGCCACAA
AATTGGCCTTTTCTCTATCAAATTGTTGGAAACATATTATAAAGTTGAAT
AATTTAAATTTAAAAAAAGCTGCTTTAGGCGTACAAGCTTTCGCGAGCAG
AAACTTTCGCGATTTTCGCGAATTTTGGCCCTTTACGCGAAAGTAAATGT
CTTTAAAAATTCTAGGAAGGGCTATTCGCGAAAGTTTAGGCTCGCGAAAA
ATTCTTGACAAAATAGAAAACCTGTAAACTTCAAACTTTGAATAAAATGT
AACTTTTATGGCACTTTTTAGCCTGCTAAAAGACTAATAAGTCAAAGGAC
AAATGTTTCAAGCTAATCCAAGAAGTATTCGTCCCTCTAAGCCATTTTTT
CATGTGAAAATTCTCAATTTTACGTCTTGGTTCGCGAAAGTTTATGCTCG
CAAAAAATATTTTTCCGTTAAATTCGCGAAAGTAAAAGTCGTGAATTTCG
CGATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013618-exon-sc0000170-1575043694:442332..442352 | TCONS_00013618-exon-sc0000170-1575043694:442332..442352 | Clytia hemisphaerica | exon |
| TCONS_00013618-exon-sc0000170-1575043694:441838..441997 | TCONS_00013618-exon-sc0000170-1575043694:441838..441997 | Clytia hemisphaerica | exon |
| TCONS_00013618-exon-sc0000170-1575043694:438746..438866 | TCONS_00013618-exon-sc0000170-1575043694:438746..438866 | Clytia hemisphaerica | exon |
| TCONS_00013618-exon-sc0000170-1575043694:437395..438131 | TCONS_00013618-exon-sc0000170-1575043694:437395..438131 | Clytia hemisphaerica | exon |
| TCONS_00013618-exon-sc0000170-1510915933:442332..442352 | TCONS_00013618-exon-sc0000170-1510915933:442332..442352 | Clytia hemisphaerica | exon |
| TCONS_00013618-exon-sc0000170-1510915933:441838..441997 | TCONS_00013618-exon-sc0000170-1510915933:441838..441997 | Clytia hemisphaerica | exon |
| TCONS_00013618-exon-sc0000170-1510915933:438746..438866 | TCONS_00013618-exon-sc0000170-1510915933:438746..438866 | Clytia hemisphaerica | exon |
| TCONS_00013618-exon-sc0000170-1510915933:437395..438131 | TCONS_00013618-exon-sc0000170-1510915933:437395..438131 | Clytia hemisphaerica | exon |
| TCONS_00013618-exon-sc0000170-1491911889:442332..442352 | TCONS_00013618-exon-sc0000170-1491911889:442332..442352 | Clytia hemisphaerica | exon |
| TCONS_00013618-exon-sc0000170-1491911889:441838..441997 | TCONS_00013618-exon-sc0000170-1491911889:441838..441997 | Clytia hemisphaerica | exon |
| TCONS_00013618-exon-sc0000170-1491911889:438746..438866 | TCONS_00013618-exon-sc0000170-1491911889:438746..438866 | Clytia hemisphaerica | exon |
| TCONS_00013618-exon-sc0000170-1491911889:437395..438131 | TCONS_00013618-exon-sc0000170-1491911889:437395..438131 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000170 | supercontig | sc0000170:437395..442352 - |
Blast
The following BLAST results are available for this feature:
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