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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013623 ID=TCONS_00013623|Name=TCONS_00013623|organism=Clytia hemisphaerica|type=transcript|length=464bp
ATTTAGTACTATCTTTGTCATCATTATCTGGAAGCTTAAAAGATAGATAA
AGAATGTAATCATAATGATGGCCGATCCGAAGATTTCAATCGAACTAAGT
AACGAAAAACAAGAAATCTTTTATCCTGGTGAAAAGATTAGTGGGCATGT
GGTTATTGAGTTGGATAAACCATTGGAGACAAAAAACGTCTGTTTGACTT
TTGGAGgaaaAGGCGACGTCGTGTGGGTGGAAACAATCGCTGATGACATT
GAAACTTACCACGGcaaagaagaaatttttatgTTCGAACATATCTTCTA
CGGCCAGAGAAAAAGTAGCTCTAGAGTAGTTCTACCGACCGGGAGAACAA
GTTACTCTTTTGTTTTCAGTGTACCAAATGGTATCCCAAGTTCTTATACT
GGAATAAAAATTGGATTTATTCGATATGAAATGGAAGCTCAAATCACTTT
AGCTtacaaatcaa Run BLAST on NCBI transcript from alignment at sc0000170:439575..442373- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013623 ID=TCONS_00013623|Name=TCONS_00013623|organism=Clytia hemisphaerica|type=transcript|length=2799bp|location=Sequence derived from alignment at sc0000170:439575..442373- (Clytia hemisphaerica)
ATTTAGTACTATCTTTGTCATCATTATCTGGAAGCTTAAAAGGTATGTGA
TATTCGTTTTCGTTTTTGTTTATGTTTTTTTTTGTATTAGTTCCTCCGCG
GTTTCTTTAAAGCCAAATTCAAGTCTTCGTAATTCGATTCAATAATTATC
CATCCGTTCTCAGAAGCAGTTCTGATTGATTGAGGTTCAAAATTTAAGAC
AACGAGTTTTGCTTCTATTAGATATTGACGATGGCAACCCGAAGAGGAAA
GTTCATAACTTTTGAACCATATTCAGAGAATTGCCAATATGGACAAAATA
ATCAAACTCACACACGAGGATGTGTTGTTTGTTATAAATCTTACTTTTTT
CATATAATTTGTTCGTTCCTAGATAGATAAAGAATGTAATCATAATGATG
GCCGATCCGAAGATTTCAATCGAACTAAGTAACGAAAAACAAGAAATCTT
TTATCCTGGTGAAAAGATTAGTGGGCATGTGGTTATTGAGTTGGATAAAC
CATTGGAGACAAAAAACGTCTGTTTGACTTTTGGAGGTTTGTTGTTCTAT
CCTGGTTGAGGTTAGGCTGCTTGCATTCACTAACGGATTCGTGCTCCTTA
TAGAGGATGCTTAATAAGCTATATTTCATTTGTCCAGAGATTTGCCGCCT
TTAGCTGATATACATTCTATTGAAAACGTTCGAAACGATCGTTTTTGCGC
GCACATCAATGCCAATCAAATCATTAACTTGCCAAGATTTTGTAAAATAC
ATCGAAATAAAAAAAAACCGAACCAGAAAGCGGCTGGTAGATTATTAAGC
AGACCTATACTACCTGGGGTTTTGTAGAGGTCTGCGATTTAGACTAAGTT
GAGGTCTCCGTACACGGAAAACCGTGAATTTTCTGCCCCTGAATTTTCAA
TCTTAGGCAAGTACATACTGTATTAAATTAACTAAACACCCCTCTCTCAC
AGCCCTGGTGGAAGTTTTTTGTCTGTTGGGATAGAAATTTCTATTGAAAT
CCTAATGGGGACAGAAATTATATTGTTCCAAGGGGGATGGTTTTGGAGTA
CAATTTTCAAACATTGAAATTAGACAGTCAACTTCCTAGCCTGGATATCC
AAGCTCAAAATTTTAGAAAAAATAAAATTTACCTCAATATACAAAGTTCT
AAAATTATAGAGCTTGGTCTCCCTAGAGAAAGAAAGTGCAAACCCATGTT
TCTGAAACTTTTCTAGTCAACCCAGGTCAGCGAAACAGAAATTAATAAAA
AAGCAGCCTTGCAAGATCTAAAACCATTTAAAACATCCAAAGATTACACC
AGAGTCCATAAACAAGTTTGCATGCATTATCATGACCAACCACGTTTTCT
TGAAAAATGAACTTGCCTCTGTTTTCTTCTGTTTCGTGTTTTCATGTAAA
AGAAAGCTGTATCTTTACTAGAAACTGGAGGACTATCCTATTTTTGTTTC
AGAATTGCTCCACGCCGTGTAGATTGGTCCGTACGGCTTTAGTGAAGTGA
GTGCAAGCAAGCGGACTGCATTCTCATACGAGAATGCAAAACGCTCTAGG
GAGACCAGGCTGTAAACCAGAACAAAAAAATATCAAAAACTAGACTGAAA
TAGTTTACAGCCTGGATATCCAGGCTATCAACTTCCCAGTGGGGCTGAAA
TTGTATTTTTTTCATTTTCAGGAAAAGGCGACGTCGTGTGGGTGGAAACA
ATCGCTGATGACATTGAAACTTACCACGGCAAAGAAGAAATTTTTATGTT
CGAACATATCTTCTACGGCCAGAGAAAAAGTAGCTCTAGAGTAGTTCTAC
CGACCGGGAGAACAAGTTACTCTTTTGTTTTCAGTGTACCAAATGGTATC
CCAAGTTCTTATACTGGAATAAAAATTGGATTTATTCGATATGAAATGGA
AGGTATTAGTAATTAATCCACATTCGATTAGAGTTTGATCAGTATCTTTT
CAGTAGCATAAGGGAAATCTAATTTAATAATAGACGATATCGGCTTAACG
AAATTCTTCCCGAATGATTACCCATGATGCATTGCGCAAAAAAATTCAGT
AAGTCAATATTGTCCGTGAATTTTTTTGCGCAATGCATCATGGGTAATCA
TTCGGGGAGGAATTCGTAAAGCCGATATCGTCTATTAGATTAATAATTTC
TCCTCGGGATGAATAACTCGTTGTATTTCGGGAAGTCTCAAACATATAAC
TGACTCAACCAAATTTCTCAGCCATCTAGCATAATTTGTTTGAACCCCTT
GGTGGTGGAACCCTTGGTGGTGGACCCTTGGTGGTGGAACCCTTGGTGGT
GGAACCCTTGGTGGTGGAACCCTTGGTGGTGGAACCCTTTTCTCTTAAGT
TAGAGAAATGGAAATTTCACTTCGGACATAATTTTTTTCATTTACAAACG
TCTTACTTTTGTATCTGAATCCTTTTTTAAATGCATAATTTTTACAAAGT
TAGAGTGCACTTCCTCTCATTTCAACCCTTACGGTGCACTTTGGGAATAG
TGTTTGAAAACAAGGTCTGCAAGACACATTTTCGACCGTAGCCGCCAGGT
GCCGCGCGGACCCTAAAACCGTCCCAGTCTTTTTTCACACCTAAAAATAA
TAGAAAAAATGTTTAAAAAAAGGATTGGATTGAGTTTAGGGTGGTAAATT
GAATAATAAAGTGGCACGCGCCTGACCGCGCGACTACGGTCGAAAAGGTA
TCCAATGATTATTCATTATTCATCTAAAGAAGAGTGTCTTTATTTTTTTC
TCTTCTTCCTCCTTCACAATAGCTCAAATCACTTTAGCTTACAAATCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013623-exon-sc0000170-1575043694:442332..442373 | TCONS_00013623-exon-sc0000170-1575043694:442332..442373 | Clytia hemisphaerica | exon |
| TCONS_00013623-exon-sc0000170-1575043694:441838..442001 | TCONS_00013623-exon-sc0000170-1575043694:441838..442001 | Clytia hemisphaerica | exon |
| TCONS_00013623-exon-sc0000170-1575043694:440472..440702 | TCONS_00013623-exon-sc0000170-1575043694:440472..440702 | Clytia hemisphaerica | exon |
| TCONS_00013623-exon-sc0000170-1575043694:439575..439601 | TCONS_00013623-exon-sc0000170-1575043694:439575..439601 | Clytia hemisphaerica | exon |
| TCONS_00013623-exon-sc0000170-1510915933:442332..442373 | TCONS_00013623-exon-sc0000170-1510915933:442332..442373 | Clytia hemisphaerica | exon |
| TCONS_00013623-exon-sc0000170-1510915933:441838..442001 | TCONS_00013623-exon-sc0000170-1510915933:441838..442001 | Clytia hemisphaerica | exon |
| TCONS_00013623-exon-sc0000170-1510915933:440472..440702 | TCONS_00013623-exon-sc0000170-1510915933:440472..440702 | Clytia hemisphaerica | exon |
| TCONS_00013623-exon-sc0000170-1510915933:439575..439601 | TCONS_00013623-exon-sc0000170-1510915933:439575..439601 | Clytia hemisphaerica | exon |
| TCONS_00013623-exon-sc0000170-1491911889:442332..442373 | TCONS_00013623-exon-sc0000170-1491911889:442332..442373 | Clytia hemisphaerica | exon |
| TCONS_00013623-exon-sc0000170-1491911889:441838..442001 | TCONS_00013623-exon-sc0000170-1491911889:441838..442001 | Clytia hemisphaerica | exon |
| TCONS_00013623-exon-sc0000170-1491911889:440472..440702 | TCONS_00013623-exon-sc0000170-1491911889:440472..440702 | Clytia hemisphaerica | exon |
| TCONS_00013623-exon-sc0000170-1491911889:439575..439601 | TCONS_00013623-exon-sc0000170-1491911889:439575..439601 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000170 | supercontig | sc0000170:439575..442373 - |
Blast
The following BLAST results are available for this feature:
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