TCONS_00013640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013640
Unique NameTCONS_00013640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013640 ID=TCONS_00013640|Name=TCONS_00013640|organism=Clytia hemisphaerica|type=transcript|length=323bp
AAGACATTTTCACCATCAATCGACAACATGGTGGATTCATTATCGTTCCC
GTCTGTGTTCTCGATACGGATCGTTGGGATTGGTGTATTGAAGTCACGTG
GTGTTAATCCTTCATGGTCATTGGTCCTTGAAGTcgcttcttcattttca
ttggcTCCTGAAAGGTATTCCTCTGACACAGAACAAGACTGTGTAGCAGG
ATTCTTCCAGTTGGTTGCTAATCCAAAGGGTGGTTGTGAGGAATTTTGCT
TTTCAATATCTGAGCAAGATGTATCACTGCTCACCTTTTCAGAGAGCGGC
TCAGAGAGAGAATTAGCTGaatg
Run BLAST on NCBI

protein sequence of TCONS_00013640-protein

>TCONS_00013640-protein ID=TCONS_00013640-protein|Name=TCONS_00013640-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
HSANSLSEPLSEKVSSDTSCSDIEKQNSSQPPFGLATNWKNPATQSCSVS
EEYLSGANENEEATSRTNDHEGLTPRDFNTPIPTIRIENTDGNDNESTML
SIDGENV
Run BLAST on NCBI

transcript from alignment at sc0000170:287291..287613

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013640 ID=TCONS_00013640|Name=TCONS_00013640|organism=Clytia hemisphaerica|type=transcript|length=323bp|location=Sequence derived from alignment at sc0000170:287291..287613 (Clytia hemisphaerica)
cattCAGCTAATTCTCTCTCTGAGCCGCTCTCTGAAAAGGTGAGCAGTGA
TACATCTTGCTCAGATATTGAAAAGCAAAATTCCTCACAACCACCCTTTG
GATTAGCAACCAACTGGAAGAATCCTGCTACACAGTCTTGTTCTGTGTCA
GAGGAATACCTTTCAGGAgccaatgaaaatgaagaagcgACTTCAAGGAC
CAATGACCATGAAGGATTAACACCACGTGACTTCAATACACCAATCCCAA
CGATCCGTATCGAGAACACAGACGGGAACGATAATGAATCCACCATGTTG
TCGATTGATGGTGAAAATGTCTT

Coding sequence (CDS) from alignment at sc0000170:287291..287613

>TCONS_00013640 ID=TCONS_00013640|Name=TCONS_00013640|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0000170:287291..287613 (Clytia hemisphaerica)
cattCAGCTAATTCTCTCTCTGAGCCGCTCTCTGAAAAGGTGAGCAGTGA
TACATCTTGCTCAGATATTGAAAAGCAAAATTCCTCACAACCACCCTTTG
GATTAGCAACCAACTGGAAGAATCCTGCTACACAGTCTTGTTCTGTGTCA
GAGGAATACCTTTCAGGAgccaatgaaaatgaagaagcgACTTCAAGGAC
CAATGACCATGAAGGATTAACACCACGTGACTTCAATACACCAATCCCAA
CGATCCGTATCGAGAACACAGACGGGAACGATAATGAATCCACCATGTTG
TCGATTGATGGTGAAAATGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007615XLOC_007615Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013640-exon-sc0000170-1491911889:287291..287613TCONS_00013640-exon-sc0000170-1491911889:287291..287613Clytia hemisphaericaexon
TCONS_00013640-exon-sc0000170-1510915933:287291..287613TCONS_00013640-exon-sc0000170-1510915933:287291..287613Clytia hemisphaericaexon
TCONS_00013640-exon-sc0000170-1575043694:287291..287613TCONS_00013640-exon-sc0000170-1575043694:287291..287613Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013640-proteinTCONS_00013640-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000170supercontigsc0000170:287291..287613 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.344707	0.655707	0	0.2563	0	0	0	0.173647	0	0	1.13509	0	0	0.425232	0	0	0	0.138684	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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