TCONS_00013654 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013654
Unique NameTCONS_00013654
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length673

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013654 ID=TCONS_00013654|Name=TCONS_00013654|organism=Clytia hemisphaerica|type=transcript|length=673bp
GCTTTACACACCTCTAGAATTTctcaatctttcaagaaatggAATTTTCG
TTCAATATCCCAATGTAGTGGGAGATCCAAACcttacttttttcaaagtt
aATTACACACTCTTATTATCAGGCGATGTAGAACTTAACCCAGGCCCAAC
TGTTCAAGGTTCATTTCACCAGGGCAACAGTAAATTTGGCAAGACGGCAG
GTATGCAATGTTCCTcgaattgtttttttgctatttgctATGCTCAATTT
AGAAAATTGTCGCTATGGAAGACTCATGATTTGGATTATGTTTTAGACCA
AGGTGatctgaatttcaaaaaattgggtATTACAGGACAGTCCCCATATA
TTGAAGAGTTTTCTAAGGTAATTGAAATAGGAAACAGCACTTGTGCactt
aatttcaatatttttgaaggCTATTTTGAGACCGGTAACATTTCAGTAAA
TTTTGTTCAGGAGGAACTCTTGTTGCAACATTCTGGTGCAGTTTTAGTGA
TAGCTGGAAATTGCCTAGCTGTGATGCActataacaaaaattactttttt
tttgactcgcATAGCAGAGACGCCGAAGGCCATCAAGTTGAAGGCAGTAT
TGGAACTTCAGTTCTTTTAAAGTTTGACAACTTACAAGAAATTAAACAGT
ATATAAGATCTGAGTATAAGAAC
Run BLAST on NCBI

protein sequence of TCONS_00013654-protein

>TCONS_00013654-protein ID=TCONS_00013654-protein|Name=TCONS_00013654-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
LYTPLEFLNLSRNGIFVQYPNVVGDPNLTFFKVNYTLLLSGDVELNPGPT
VQGSFHQGNSKFGKTAGMQCSSNCFFAICYAQFRKLSLWKTHDLDYVLDQ
GDLNFKKLGITGQSPYIEEFSKVIEIGNSTCALNFNIFEGYFETGNISVN
FVQEELLLQHSGAVLVIAGNCLAVMHYNKNYFFFDSHSRDAEGHQVEGSI
GTSVLLKFDNLQEIKQYIRSEYKN
Run BLAST on NCBI

transcript from alignment at sc0000170:504090..504762

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013654 ID=TCONS_00013654|Name=TCONS_00013654|organism=Clytia hemisphaerica|type=transcript|length=673bp|location=Sequence derived from alignment at sc0000170:504090..504762 (Clytia hemisphaerica)
GTTCTTATACTCAGATCTTATATACTGTTTAATTTCTTGTAAGTTGTCAA
ACTTTAAAAGAACTGAAGTTCCAATACTGCCTTCAACTTGATGGCCTTCG
GCGTCTCTGCTATgcgagtcaaaaaaaaagtaatttttgttatagTGCAT
CACAGCTAGGCAATTTCCAGCTATCACTAAAACTGCACCAGAATGTTGCA
ACAAGAGTTCCTCCTGAACAAAATTTACTGAAATGTTACCGGTCTCAAAA
TAGccttcaaaaatattgaaattaagtGCACAAGTGCTGTTTCCTATTTC
AATTACCTTAGAAAACTCTTCAATATATGGGGACTGTCCTGTAATaccca
attttttgaaattcagatCACCTTGGTCTAAAACATAATCCAAATCATGA
GTCTTCCATAGCGACAATTTTCTAAATTGAGCATagcaaatagcaaaaaa
acaattcgAGGAACATTGCATACCTGCCGTCTTGCCAAATTTACTGTTGC
CCTGGTGAAATGAACCTTGAACAGTTGGGCCTGGGTTAAGTTCTACATCG
CCTGATAATAAGAGTGTGTAATtaactttgaaaaaagtaagGTTTGGATC
TCCCACTACATTGGGATATTGAACGAAAATTccatttcttgaaagattga
gAAATTCTAGAGGTGTGTAAAGC

Coding sequence (CDS) from alignment at sc0000170:504090..504762

>TCONS_00013654 ID=TCONS_00013654|Name=TCONS_00013654|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at sc0000170:504090..504762 (Clytia hemisphaerica)
GTTCTTATACTCAGATCTTATATACTGTTTAATTTCTTGTAAGTTGTCAA
ACTTTAAAAGAACTGAAGTTCCAATACTGCCTTCAACTTGATGGCCTTCG
GCGTCTCTGCTATgcgagtcaaaaaaaaagtaatttttgttatagTGCAT
CACAGCTAGGCAATTTCCAGCTATCACTAAAACTGCACCAGAATGTTGCA
ACAAGAGTTCCTCCTGAACAAAATTTACTGAAATGTTACCGGTCTCAAAA
TAGccttcaaaaatattgaaattaagtGCACAAGTGCTGTTTCCTATTTC
AATTACCTTAGAAAACTCTTCAATATATGGGGACTGTCCTGTAATaccca
attttttgaaattcagatCACCTTGGTCTAAAACATAATCCAAATCATGA
GTCTTCCATAGCGACAATTTTCTAAATTGAGCATagcaaatagcaaaaaa
acaattcgAGGAACATTGCATACCTGCCGTCTTGCCAAATTTACTGTTGC
CCTGGTGAAATGAACCTTGAACAGTTGGGCCTGGGTTAAGTTCTACATCG
CCTGATAATAAGAGTGTGTAATtaactttgaaaaaagtaagGTTTGGATC
TCCCACTACATTGGGATATTGAACGAAAATTccatttcttgaaagattga
gAAATTCTAGAGGTGTGTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007629XLOC_007629Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013654-exon-sc0000170-1491911889:504090..504762TCONS_00013654-exon-sc0000170-1491911889:504090..504762Clytia hemisphaericaexon
TCONS_00013654-exon-sc0000170-1510915933:504090..504762TCONS_00013654-exon-sc0000170-1510915933:504090..504762Clytia hemisphaericaexon
TCONS_00013654-exon-sc0000170-1575043694:504090..504762TCONS_00013654-exon-sc0000170-1575043694:504090..504762Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013654-proteinTCONS_00013654-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000170supercontigsc0000170:504090..504762 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.24058	0.966043	2.11317	1.79233	0.34237	0.453518	0.402172	0.561172	0	0.0798093	0.258159	0.442341	0.147405	0.117402	0.0902368	0.504841	0.295765	0.127323	0.331493	0.278738	0.764027	0.589499	0.325356	0.48448	0.164185	0.565132	0.910746	0.558078	0.442901	0.572249
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006928htUSP_central_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013654 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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