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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013655 ID=TCONS_00013655|Name=TCONS_00013655|organism=Clytia hemisphaerica|type=transcript|length=1384bp
aataaaagaagaaagagaaAGCAAGATGACGATCCAGATTTTGTCCTGCC
CAAAAAAGCTGCAACAAACCCAACATCATCAAAACGcaaagaaaatgacc
aaaattgtTCAAATGTGAACACTTGCGTTATCCACTGTACCGATACTCGT
GATGAACTCATACCTTTGACGAGACTCGATACCTGGTTGAAACTGAAAGA
AGTAGCTACTTTAAAACGGCATCCCCTGATGGATATTGAAGCAAACAGTC
CCGACAAAGTACCCGATAATCTTTCATATCACCGGAAATGTTACCAGCGT
TTCACCCTAAAGAGAGACATCGACAAGCTGAAATCCCAGCATGAGAAGAT
CCAAGCACAGGTCGATCCGGAAGAAATTGTTGATGATGGCGAGGAACCAC
GAAGGAAATCAAACCGTGTATGTTCAGACTCTCCCATTGAAAAGAATATA
TGTCTATTCTGTAAAGTAAGGAGAGTTAAAGATAGTATATACAGAAGAAA
CTTTAGTGCAGTGCGTAGATGAACAAGCCAGAGATCGGATCATCGAGTGT
GCTAAGAGAAAAGGCAGATTTGATATTTTCGGAATTTCAAACCTGATTTC
AAACGAGGCCAAATATCACAAGAGCTGTTATCGAAATTTTACACACATAC
CAGATGATAAAGTAGAACCAACCGAATCAGAAACCGAAAAGTCGCTCCGA
TCGTCTGCATTCAAAGAAGTTGTAAAATTCTGTTTGGATCTAGAGACTTT
CCGATCAAATGAAATAATTCCACTCAAACATCTCGTATCAATTATGGAAG
ATAAACTGAAAGAAAGCGATCTGACAATGAATGCTTCCactagaaaaaat
ttcaaaagggaTCTACAAACACAAGCACCATCTCTTAAATTCCTAGATTC
TGGGAATGAGATCTATGTTTACAGCAAATCTGCCTCAATCGAAGATATTA
TGCTTAAATATATCAAAGCTAAGGAGGAAANCTGCCTCAATCGAAGATAT
TATGCTTAAATATATCAAAGCTAAGGAGGAAAACGACCAATTGAAGAACG
AACAGCAGAATGAGGAAGAGCAATTCATTAAATGCTTTGCAATATTACGA
AAGGAAGTTAAATAGCTGAATGATACAATGCCTTGGCCACCGCAACCAGA
AGACCTAACTCCGGATAAGGTTGTCATTCCACCAATGCTGAACATGGCCC
TCTCNaggataatctgtggggttcgactgcgactacaatctatgctctga
gctattggaggaaatatttaaccacatctttgtggctcttgttaaaattc
agaaaaattctGCATTCAAAGAAGTTGTAAAATTCTGTTTGGATCTAGAG
ACTTTCCGATCAAATGAAATAATTCCACTCAAAC Run BLAST on NCBI protein sequence of TCONS_00013655-protein >TCONS_00013655-protein ID=TCONS_00013655-protein|Name=TCONS_00013655-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
NKRRKRKQDDDPDFVLPKKAATNPTSSKRKENDQNCSNVNTCVIHCTDTR
DELIPLTRLDTWLKLKEVATLKRHPLMDIEANSPDKVPDNLSYHRKCYQR
FTLKRDIDKLKSQHEKIQAQVDPEEIVDDGEEPRRKSNRVCSDSPIEKNI
CLFCKVRRVKDSIYRRNFSAVRR Run BLAST on NCBI transcript from alignment at sc0000171:4234..5973+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013655 ID=TCONS_00013655|Name=TCONS_00013655|organism=Clytia hemisphaerica|type=transcript|length=1740bp|location=Sequence derived from alignment at sc0000171:4234..5973+ (Clytia hemisphaerica)
aataaaagaagaaagagaaAGCAAGATGACGATCCAGATTTTGTCCTGCC
CAAAAAAGCTGCAACAAACCCAACATCATCAAAACGcaaagaaaatgacc
aaaattgtTCAAATGTGGTAAGTTTTATTTCTCTTTAGTCTCCCAATGCA
ACATATTACAGTGCTTTGTACAGAGAACAACTTGTATCATTGATCTGTAG
GGGGGAGGCTGATTATATTGCTTGAAACTTGCAAAATTCAGTTATGTAGT
GTTTGGGCACCAAAATATATTTATCATAGTTTAGTTTTTTAGTTTGAGCG
TATTCTAAACCTTTTTCAGTTGGGAAAAAAAGAAGGTGGAATCTCTGCGT
AATTTTTCACCAGGGACAATTTTTTAACTGTGATGTAGGGGTGTGAGAGA
TTTGAATGCGATACAATATCTACTACCTCCACGCAAAAGACTTATTtcga
tttttcctttttctatacGTCAGAACACTTGCGTTATCCACTGTACCGAT
ACTCGTGATGAACTCATACCTTTGACGAGACTCGATACCTGGTTGAAACT
GAAAGAAGTAGCTACTTTAAAACGGCATCCCCTGATGGATATTGAAGCAA
ACAGTCCCGACAAAGTACCCGATAATCTTTCATATCACCGGAAATGTTAC
CAGCGTTTCACCCTAAAGAGAGACATCGACAAGCTGAAATCCCAGCATGA
GAAGATCCAAGCACAGGTCGATCCGGAAGAAATTGTTGATGATGGCGAGG
AACCACGAAGGAAATCAAACCGTGTATGTTCAGACTCTCCCATTGAAAAG
AATATATGTCTATTCTGTAAAGTAAGGAGAGTTAAAGATAGTATATACAG
AAGAAACTTTAGTGCAGTGCGTAGATGAACAAGCCAGAGATCGGATCATC
GAGTGTGCTAAGAGAAAAGGCAGATTTGATATTTTCGGAATTTCAAACCT
GATTTCAAACGAGGCCAAATATCACAAGAGCTGTTATCGAAATTTTACAC
ACATACCAGATGATAAAGTAGAACCAACCGAATCAGAAACCGAAAAGTCG
CTCCGATCGTCTGCATTCAAAGAAGTTGTAAAATTCTGTTTGGATCTAGA
GACTTTCCGATCAAATGAAATAATTCCACTCAAACATCTCGTATCAATTA
TGGAAGATAAACTGAAAGAAAGCGATCTGACAATGAATGCTTCCactaga
aaaaatttcaaaagggaTCTACAAACACAAGCACCATCTCTTAAATTCCT
AGATTCTGGGAATGAGATCTATGTTTACAGCAAATCTGCCTCAATCGAAG
ATATTATGCTTAAATATATCAAAGCTAAGGAGGAAANCTGCCTCAATCGA
AGATATTATGCTTAAATATATCAAAGCTAAGGAGGAAAACGACCAATTGA
AGAACGAACAGCAGAATGAGGAAGAGCAATTCATTAAATGCTTTGCAATA
TTACGAAAGGAAGTTAAATAGCTGAATGATACAATGCCTTGGCCACCGCA
ACCAGAAGACCTAACTCCGGATAAGGTTGTCATTCCACCAATGCTGAACA
TGGCCCTCTCNaggataatctgtggggttcgactgcgactacaatctatg
ctctgagctattggaggaaatatttaaccacatctttgtggctcttgtta
aaattcagaaaaattctGCATTCAAAGAAGTTGTAAAATTCTGTTTGGAT
CTAGAGACTTTCCGATCAAATGAAATAATTCCACTCAAAC Coding sequence (CDS) from alignment at sc0000171:4234..5973+ >TCONS_00013655 ID=TCONS_00013655|Name=TCONS_00013655|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at sc0000171:4234..5973+ (Clytia hemisphaerica)
aataaaagaagaaagagaaAGCAAGATGACGATCCAGATTTTGTCCTGCC
CAAAAAAGCTGCAACAAACCCAACATCATCAAAACGcaaagaaaatgacc
aaaattgtTCAAATGTGAACACTTGCGTTATCCACTGTACCGATACTCGT
GATGAACTCATACCTTTGACGAGACTCGATACCTGGTTGAAACTGAAAGA
AGTAGCTACTTTAAAACGGCATCCCCTGATGGATATTGAAGCAAACAGTC
CCGACAAAGTACCCGATAATCTTTCATATCACCGGAAATGTTACCAGCGT
TTCACCCTAAAGAGAGACATCGACAAGCTGAAATCCCAGCATGAGAAGAT
CCAAGCACAGGTCGATCCGGAAGAAATTGTTGATGATGGCGAGGAACCAC
GAAGGAAATCAAACCGTGTATGTTCAGACTCTCCCATTGAAAAGAATATA
TGTCTATTCTGTAAAGTAAGGAGAGTTAAAGATAGTATATACAGAAGAAA
CTTTAGTGCAGTGCGTAGATGAaataaaagaagaaagagaaAGCAAGATG
ACGATCCAGATTTTGTCCTGCCCAAAAAAGCTGCAACAAACCCAACATCA
TCAAAACGcaaagaaaatgaccaaaattgtTCAAATGTGAACACTTGCGT
TATCCACTGTACCGATACTCGTGATGAACTCATACCTTTGACGAGACTCG
ATACCTGGTTGAAACTGAAAGAAGTAGCTACTTTAAAACGGCATCCCCTG
ATGGATATTGAAGCAAACAGTCCCGACAAAGTACCCGATAATCTTTCATA
TCACCGGAAATGTTACCAGCGTTTCACCCTAAAGAGAGACATCGACAAGC
TGAAATCCCAGCATGAGAAGATCCAAGCACAGGTCGATCCGGAAGAAATT
GTTGATGATGGCGAGGAACCACGAAGGAAATCAAACCGTGTATGTTCAGA
CTCTCCCATTGAAAAGAATATATGTCTATTCTGTAAAGTAAGGAGAGTTA
AAGATAGTATATACAGAAGAAACTTTAGTGCAGTGCGTAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013655-exon-sc0000171-1491911889:4234..4350 | TCONS_00013655-exon-sc0000171-1491911889:4234..4350 | Clytia hemisphaerica | exon |
| TCONS_00013655-exon-sc0000171-1510915933:4234..4350 | TCONS_00013655-exon-sc0000171-1510915933:4234..4350 | Clytia hemisphaerica | exon |
| TCONS_00013655-exon-sc0000171-1575043694:4234..4350 | TCONS_00013655-exon-sc0000171-1575043694:4234..4350 | Clytia hemisphaerica | exon |
| TCONS_00013655-exon-sc0000171-1491911889:4707..5973 | TCONS_00013655-exon-sc0000171-1491911889:4707..5973 | Clytia hemisphaerica | exon |
| TCONS_00013655-exon-sc0000171-1510915933:4707..5973 | TCONS_00013655-exon-sc0000171-1510915933:4707..5973 | Clytia hemisphaerica | exon |
| TCONS_00013655-exon-sc0000171-1575043694:4707..5973 | TCONS_00013655-exon-sc0000171-1575043694:4707..5973 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000171 | supercontig | sc0000171:4234..5973 + |
Blast
The following BLAST results are available for this feature:
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