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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013662 ID=TCONS_00013662|Name=TCONS_00013662|organism=Clytia hemisphaerica|type=transcript|length=2887bpRun BLAST on NCBI transcript from alignment at sc0000171:49006..61603+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013662 ID=TCONS_00013662|Name=TCONS_00013662|organism=Clytia hemisphaerica|type=transcript|length=12598bp|location=Sequence derived from alignment at sc0000171:49006..61603+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00013662 vs. Swiss-Prot (Human)
Match: GBF1 (Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 OS=Homo sapiens GN=GBF1 PE=1 SV=2) HSP 1 Score: 768.074 bits (1982), Expect = 0.000e+0 Identity = 450/939 (47.92%), Postives = 638/939 (67.94%), Query Frame = 2
Query: 152 SLDTKPASVKKVATPNDPSEDV---NSEYVNPQGVRFTPQEESKEGQANIVPYGLPCVRELLRFLSTLINPHDRHNTNAMVHIGLSLLTVALESGASHLGHFASLMTLIKDDLCRNIFALLQCDIHILFSLSMRVCFLLFEALRGCLKFQLERYIIKLSDILALDNLNVPYEKREMALEYMNQLFHIPCLVQEIYLNFDCDLHATNVLEDMCKILSKNAFR-PGNLSSVNLLALDALLSIINEIESHCISPN-DSKTRQER--TLSNSSEV---TADESGTDDTHEDIVTPATSGYDI--------GRKLLSLGLYGID--EEKMDGAQASKCFTSK----QVPAPSXXXXXXXXXXXXXLLIGIEEFNKKAKKGIEYLQENGLMSTPFLPEELVHFMKENPNVDKKVIGDYIGDKRNPKVLEAFVKSFELKDVRVDEALRCFLEAFRLPGEAPVISLILEEFALRYFENNQSPYENQDAVFTLAYAIIMLNVDQHNKNI-KQQKPMQPEEFKRNLRKTNGSGDFPAELLQAIYENIKNNEIVMPSERSGKVKEAYEWKLLLRRAEGPDGIYIPVTSSIYDEELFLVLWGPTVAALSYIYENSVDKTNIQKTILGFRKCATISAFYNLSEVFDNLLQSLCKFTSLLVTGEASDNLPVLFGGNLKAQLSARTAFALAHKYGDIIHEGWHNXXXXXXXXXXXXXXXXXXTEVEDFVD--GKVSIIKEEPKPVTKQDNSGMLSGILXXXXXXXXXXXXXXXAEDRKAQENAINCIKECRPESIITESKFLRGESLQELVKALIISSKPEHSYESTDVPYDAEASVFFLEFLIEIALQNRDRISLLWQPLREHLSNIIISAPKVSFLVEXXXXXXXXXXXXXXXXEDISAQILITLRILLMMHPKVLLSCSKQISYGLHELVRTNASDIHYSRDWITILTILQ 2887
S+++ P +++ +P D S+ + +YVNP+GVRFT Q KEG A +VPYGLPC+REL RFL +L NPHDRHN+ M+H+GL LLTVALES + +L+ LIKD++CR++F LL + L++ S+RVCFLLFE++R LKFQ+E YI KL +I+ ++N +PYE +EMALE + QL+ IP V E+Y+N+DCD + +N+ E++ K+LSKNAF G L + +LL+LDALL++I+ E+HC + +S T+QE+ T S E+ T + S T+ T D + DI GR G G EE +D A K F K P E K KKK L+ G E+FN+K KKGI++LQE GL++ P E+ +++ENP +DKK+IG+++ D++N +LE+FV +F + +R+DEALR +LEAFRLPGEAPVI +LE F R+ N SP+ N DA F+LAYA+IMLN DQHN N+ KQ PM EEF++NL+ NG DF ++L+ +Y IKN EIVMP E++G V+E Y W +LL R P+GI++ V ++ YD +LF + WGPT+AALSY+++ S+++T IQK I GFRKCA ISA Y LS+VFDNL+ SLCKFT+L + E+ +NLP +FG N KA ++A+T F LAH++GDI+ EGW N++ +LQL + +LLP ++ EVEDFVD GK+S+ +EE P + +++ + + + SS + E+++A+ A+ CIK+C PE +ITESKFL+ ESLQEL+KAL+ + E + YD E + F LE L+ I L+NRDR+ +WQ +R+HL ++ + A FLVERAVVGLLRLAIRL+RRE+ISAQ+L++LRILL+M P VL S Q++YGLHEL++TNA++IH DW T+ T+L+
Sbjct: 349 SVESIPEVLEECTSPADHSDSASVHDMDYVNPRGVRFT-QSSQKEGTA-LVPYGLPCIRELFRFLISLTNPHDRHNSEVMIHMGLHLLTVALESAP--VAQCQTLLGLIKDEMCRHLFQLLSIERLNLYAASLRVCFLLFESMREHLKFQMEMYIKKLMEIITVENPKMPYEMKEMALEAIVQLWRIPSFVTELYINYDCDYYCSNLFEELTKLLSKNAFPVSGQLYTTHLLSLDALLTVIDSTEAHCQAKVLNSLTQQEKKETARPSCEIVDGTREASNTERTASDGKAVGMAS-DIPGLHLPGGGRLPPEHGKSGCSDLEEAVDSG-ADKKFARKPPRFSCLLPDPRELIEIKNKKKLLITGTEQFNQKPKKGIQFLQEKGLLTIPMDNTEVAQWLRENPRLDKKMIGEFVSDRKNIDLLESFVSTFSFQGLRLDEALRLYLEAFRLPGEAPVIQRLLEAFTERWMNCNGSPFANSDACFSLAYAVIMLNTDQHNHNVRKQNAPMTLEEFRKNLKGVNGGKDFEQDILEDMYHAIKNEEIVMPEEQTGLVRENYVWNVLLHRGATPEGIFLRVPTASYDLDLFTMTWGPTIAALSYVFDKSLEETIIQKAISGFRKCAMISAHYGLSDVFDNLIISLCKFTAL--SSESIENLPSVFGSNPKAHIAAKTVFHLAHRHGDILREGWKNIMEAMLQLFRAQLLPKAMIEVEDFVDPNGKISLQREE-TPSNRGESTVLSFVSWLTLSGPEQSSVRGPSTENQEAKRVALECIKQCDPEKMITESKFLQLESLQELMKALVSVTPDEET-------YDEEDAAFCLEMLLRIVLENRDRVGCVWQTVRDHLYHLCVQAQDFCFLVERAVVGLLRLAIRLLRREEISAQVLLSLRILLLMKPSVLSRVSHQVAYGLHELLKTNAANIHSGDDWATLFTLLE 1271 The following BLAST results are available for this feature:
BLAST of TCONS_00013662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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