TCONS_00013673 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013673
Unique NameTCONS_00013673
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length898

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013673 ID=TCONS_00013673|Name=TCONS_00013673|organism=Clytia hemisphaerica|type=transcript|length=898bp
TGACAACGAAAACGAGGCTGAACAATCAAGTCAACAAACATCAAGTCAAA
AACGCAAGAAGAAATCTTCAACTTCGACAGATGATGCTAGTAAAACACTG
AAGATGAAAAAACGTAAATTGGGACCTGATGATGAAGGATACGATCCTTa
tgattttgatcaaaatgaagCTGCTGAGAAAGACCAAGATGAATCACGAC
GTCGCTCTAAAAAGAAGAAGTCAGTGTCTGATGATACGGCAGCCGAAAGT
ATGGAAGTTGAACAACAGAAACCGACAATCACTGATGCCAGATTCCAAAG
CTTTAGGTCATCACTCCAATCCTCATTCAGTAGTGCGCATGTTCAAACGT
TACCATTGACAACGATCGTTGAAAACCTAAACAAGAGTTATGCGGACGCT
AaattcagccaatcagagatcGATGCAGCTGTTGAAAGAATGACTGAGGA
TAACCATATCATGGTATCCGATGGAAATGTCTTCCTCGTGTAAAGAAGGC
CTAAAGATAAGTTTTTAGTGTAAACTAAGCCTTAAAACTGGCTCCAACAA
GGAATGCCATTTTCATATGGTATTTGTGGCCAAAAGAAGATTCGGTGCTT
CGTTTAATAAAAGGGACACTTATTGTGAAATCCAAGAGACTCCGCAAAGC
CGATAGGTACGAGAACGACCTGACATTCTAGATAGATGATGGTAATTAAC
CCGAACAGATTCTAAGAGAATATTtatacatttttaacaaaaactGGGGG
AATCTCAAACCTccaaaaaaggtaatttttccCATTTATAGATTTCATAA
AACAcaattttcaatgtttgtaaaaaaaattcaatattatatCTAATACT
AGAACTATTTAAacagaaaaacttaaaaaattgaaGCTTAAGTTTGGT
Run BLAST on NCBI

protein sequence of TCONS_00013673-protein

>TCONS_00013673-protein ID=TCONS_00013673-protein|Name=TCONS_00013673-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
DNENEAEQSSQQTSSQKRKKKSSTSTDDASKTLKMKKRKLGPDDEGYDPY
DFDQNEAAEKDQDESRRRSKKKKSVSDDTAAESMEVEQQKPTITDARFQS
FRSSLQSSFSSAHVQTLPLTTIVENLNKSYADAKFSQSEIDAAVERMTED
NHIMVSDGNVFLV
Run BLAST on NCBI

transcript from alignment at sc0000171:307319..308761+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013673 ID=TCONS_00013673|Name=TCONS_00013673|organism=Clytia hemisphaerica|type=transcript|length=1443bp|location=Sequence derived from alignment at sc0000171:307319..308761+ (Clytia hemisphaerica)
TGACAACGAAAACGAGGCTGAACAATCAAGTCAACAAACATCAAGTCAAA
AACGCAAGAAGAAATCTTCAACTTCGACAGATGATGCTAGTAAAACACTG
AAGATGAAAAAACGTAAATTGGGACCTGATGATGAAGGATACGATCCTTa
tgattttgatcaaaatgaagCTGCTGAGAAAGACCAAGGTTTGTTTCCCC
GAATTGATCCGATATTTTCCCCGATATTTCCCCGATTCAATCCGATATTT
TTCCCGATTTAAACTCGTTCGTTTCTTTTTAGTACATAAGAAAGTGTTGT
GGTATGATTTAAGATTCTGACCAAAATAGATTTGCTAAATTGTGATATTC
GCTGTCGATATCATCACAAATTATGATTGGATTCGTAGCCCATGTCATCG
TTTATCTTTAAATACCTAAGGAAATCACTGAGCCTTGACACTTAAATCAA
TTTACTTGAAAcactaaattatttttgttaGATGAATCACGACGTCGCTC
TAAAAAGAAGAAGTCAGTGTCTGATGATACGGCAGCCGAAAGTATGGAAG
TTGAACAACAGAAACCGACAATCACTGATGCCAGGTAAGTTTTGTTTCTT
TAAACGAATCCTGTAATCAAGGTTCTCTAATATTTTCAATTTGCATCATG
GCATTATGAATCTATAAGCCGAAGAAGACTTTTCGGTCCTAGAACGCATT
TGCAAGGTATAaatttagctaaaaatttaaattccttTAGCTTTCATGGT
ACTTGGGGTTGAAACGATTTCTTCAATCATCGTATTTAGGTAATTCTATT
TCAAAACAATCATAACCTTCTATTGTTCACGTTTAGATTCCAAAGCTTTA
GGTCATCACTCCAATCCTCATTCAGTAGTGCGCATGTTCAAACGTTACCA
TTGACAACGATCGTTGAAAACCTAAACAAGAGTTATGCGGACGCTAaatt
cagccaatcagagatcGATGCAGCTGTTGAAAGAATGACTGAGGATAACC
ATATCATGGTATCCGATGGAAATGTCTTCCTCGTGTAAAGAAGGCCTAAA
GATAAGTTTTTAGTGTAAACTAAGCCTTAAAACTGGCTCCAACAAGGAAT
GCCATTTTCATATGGTATTTGTGGCCAAAAGAAGATTCGGTGCTTCGTTT
AATAAAAGGGACACTTATTGTGAAATCCAAGAGACTCCGCAAAGCCGATA
GGTACGAGAACGACCTGACATTCTAGATAGATGATGGTAATTAACCCGAA
CAGATTCTAAGAGAATATTtatacatttttaacaaaaactGGGGGAATCT
CAAACCTccaaaaaaggtaatttttccCATTTATAGATTTCATAAAACAc
aattttcaatgtttgtaaaaaaaattcaatattatatCTAATACTAGAAC
TATTTAAacagaaaaacttaaaaaattgaaGCTTAAGTTTGGT

Coding sequence (CDS) from alignment at sc0000171:307319..308761+

>TCONS_00013673 ID=TCONS_00013673|Name=TCONS_00013673|organism=Clytia hemisphaerica|type=CDS|length=1476bp|location=Sequence derived from alignment at sc0000171:307319..308761+ (Clytia hemisphaerica)
GACAACGAAAACGAGGCTGAACAATCAAGTCAACAAACATCAAGTCAAAA
ACGCAAGAAGAAATCTTCAACTTCGACAGATGATGCTAGTAAAACACTGA
AGATGAAAAAACGTAAATTGGGACCTGATGATGAAGGATACGATCCTTat
gattttgatcaaaatgaagCTGCTGAGAAAGACCAAGATGAATCACGACG
TCGCTCTAAAAAGAAGAAGTCAGTGTCTGATGATACGGCAGCCGAAAGTA
TGGAAGTTGAACAACAGAAACCGACAATCACTGATGCCAGATTCCAAAGC
TTTAGGTCATCACTCCAATCCTCATTCAGTAGTGCGCATGTTCAAACGTT
ACCATTGACAACGATCGTTGAAAACCTAAACAAGAGTTATGCGGACGCTA
aattcagccaatcagagatcGATGCAGCTGTTGAAAGAATGACTGAGGAT
AACCATATCATGGTATCCGATGGAAATGTCTTCCTCGTGTAAGACAACGA
AAACGAGGCTGAACAATCAAGTCAACAAACATCAAGTCAAAAACGCAAGA
AGAAATCTTCAACTTCGACAGATGATGCTAGTAAAACACTGAAGATGAAA
AAACGTAAATTGGGACCTGATGATGAAGGATACGATCCTTatgattttga
tcaaaatgaagCTGCTGAGAAAGACCAAGATGAATCACGACGTCGCTCTA
AAAAGAAGAAGTCAGTGTCTGATGATACGGCAGCCGAAAGTATGGAAGTT
GAACAACAGAAACCGACAATCACTGATGCCAGATTCCAAAGCTTTAGGTC
ATCACTCCAATCCTCATTCAGTAGTGCGCATGTTCAAACGTTACCATTGA
CAACGATCGTTGAAAACCTAAACAAGAGTTATGCGGACGCTAaattcagc
caatcagagatcGATGCAGCTGTTGAAAGAATGACTGAGGATAACCATAT
CATGGTATCCGATGGAAATGTCTTCCTCGTGTAAGACAACGAAAACGAGG
CTGAACAATCAAGTCAACAAACATCAAGTCAAAAACGCAAGAAGAAATCT
TCAACTTCGACAGATGATGCTAGTAAAACACTGAAGATGAAAAAACGTAA
ATTGGGACCTGATGATGAAGGATACGATCCTTatgattttgatcaaaatg
aagCTGCTGAGAAAGACCAAGATGAATCACGACGTCGCTCTAAAAAGAAG
AAGTCAGTGTCTGATGATACGGCAGCCGAAAGTATGGAAGTTGAACAACA
GAAACCGACAATCACTGATGCCAGATTCCAAAGCTTTAGGTCATCACTCC
AATCCTCATTCAGTAGTGCGCATGTTCAAACGTTACCATTGACAACGATC
GTTGAAAACCTAAACAAGAGTTATGCGGACGCTAaattcagccaatcaga
gatcGATGCAGCTGTTGAAAGAATGACTGAGGATAACCATATCATGGTAT
CCGATGGAAATGTCTTCCTCGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007640XLOC_007640Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013673-proteinTCONS_00013673-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013673-exon-sc0000171-1491911889:307319..307506TCONS_00013673-exon-sc0000171-1491911889:307319..307506Clytia hemisphaericaexon
TCONS_00013673-exon-sc0000171-1510915933:307319..307506TCONS_00013673-exon-sc0000171-1510915933:307319..307506Clytia hemisphaericaexon
TCONS_00013673-exon-sc0000171-1575043694:307319..307506TCONS_00013673-exon-sc0000171-1575043694:307319..307506Clytia hemisphaericaexon
TCONS_00013673-exon-sc0000171-1491911889:307800..307902TCONS_00013673-exon-sc0000171-1491911889:307800..307902Clytia hemisphaericaexon
TCONS_00013673-exon-sc0000171-1510915933:307800..307902TCONS_00013673-exon-sc0000171-1510915933:307800..307902Clytia hemisphaericaexon
TCONS_00013673-exon-sc0000171-1575043694:307800..307902TCONS_00013673-exon-sc0000171-1575043694:307800..307902Clytia hemisphaericaexon
TCONS_00013673-exon-sc0000171-1491911889:308155..308761TCONS_00013673-exon-sc0000171-1491911889:308155..308761Clytia hemisphaericaexon
TCONS_00013673-exon-sc0000171-1510915933:308155..308761TCONS_00013673-exon-sc0000171-1510915933:308155..308761Clytia hemisphaericaexon
TCONS_00013673-exon-sc0000171-1575043694:308155..308761TCONS_00013673-exon-sc0000171-1575043694:308155..308761Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000171supercontigsc0000171:307319..308761 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
137.483	118.803	188.43	172.771	37.6361	32.8134	32.9679	36.9378	42.7402	47.0822	43.1429	32.7157	26.232	25.3218	27.8937	33.1033	47.7771	48.7719	10.5095	13.4603	28.8255	27.4645	61.4009	59.0965	49.8112	52.695	15.745	12.4331	29.9475	32.7244
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013673 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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