TCONS_00013677 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00013677
Unique Name	TCONS_00013677
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1379

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000171:347329..353021+

transcript sequence

>TCONS_00013677 ID=TCONS_00013677|Name=TCONS_00013677|organism=Clytia hemisphaerica|type=transcript|length=1379bp
TTTAAAGCCTTAGTGCGCATGcgttcaaaataaaaacatttctatGGTCG
CACGcaaaattcgagaaaatataGAAATTTTTCACATAAAGATCGACCGT
AAATTGGCCAGTGAAAGGCTCTTTCTAAAATTCTATTTAGGAACATGGCT
GCCTAAGAGGTCAGAAAAAAAGGCGAATGAAGAtctgatttttacttttt
caaaataatggGTAATTAGTGCAATTTGTTTTTAGTTAATTATGTAATCT
GATTTTACAACACACtggttatttggacgttatttCTACCCCATGAAAAG
GCTCTGAGTGGCCTCTCCAAGTCCGAAANgagatgctttgttgtcttttt
aatttttgtgtaaacttgcatatgttttgcatactttccaactaaatcca
accacggctttttcgttcctctatttttgcatacaattcaagatgNctga
aaaaaataattataaatatCAAATTGACAACAATAACTGACAACACACAC
ACCCAGCACAATGTATTATTCAGTGCAGATTGGAGATACAATCTTCACTG
TTCTGAATCGATACCAAAATCTTCATCCCATTGGTTCTGGTGCTCAAGGA
ATGGTCTGTGCTGCTTATGATAGTGTCACCAAAGAGAAGGTTGCAATCAA
AAAGTTGTCAAGACCATTCCAAAATGTAACACATGCAAAGAGAGCCTTCA
GAGAACTAAAACTAATGAAGATCACAAATCacaaaaatATAATAGGACTT
TTAAATGTATTCACTCCAGATAAATCACTAGAAGAATTTCAAGATTTATA
TCTGGTCATGGAACTCATGGACGCAAGTTTATGTCAAGTTGTTCAAATGG
ATCTAGATCATGAACGTTTATCATATTTATTATATCAGATGTTATGTGGT
ATAAAGcATTTGCATTCTGCTGGCATCATTCACAGGgatttgAAACCAAG
TAATATTGTTGTAAAATCAGATTGTAGTTTAAAAATTTTGGACTTTGGAT
TAGCAAGGACTGCAGGCTCAGCCTTTACTATGACACCTTATGTTGTGACG
AGATATTATCGTGCACCTGAAATCATCTTGGGTATGGGATATTCCGAGAA
CGTAGATGTATGGTCCATAGGTTGTATATTTGGAGAAATGATCCGTGGTT
CTGTCATGTTTCCTGGTACCGACCATATTGATCAATGGAACAAAGTTACA
GAATTATTATCGACACCTCCACAAGCTTTTTTTGACCGGTTACAACCCTC
TGTTCGAATGTACTGTGCAAATCGTCCAAGGCAGAAAGGTTATAATACAG
AAGAACTTTTCCCTGAAGAGCTCTTCCCCTCTGGAAACAGACAAAAAGTA
ATACAAGCACGAGATTTACTGACGAAGAT

Run BLAST on NCBI

transcript from alignment at sc0000171:347329..353021+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00013677 ID=TCONS_00013677|Name=TCONS_00013677|organism=Clytia hemisphaerica|type=transcript|length=5693bp|location=Sequence derived from alignment at sc0000171:347329..353021+ (Clytia hemisphaerica)
TTTAAAGCCTTAGTGCGCATGcgttcaaaataaaaacatttctatGGTCG
CACGcaaaattcgagaaaatataGAAATTTTTCACATAAAGATCGACCGT
AAATTGGCCAGTGAAAGGCTCTTTCTAAAATTCTATTTAGGAACATGGCT
GCCTAAGAGGTCAGAAAAAAAGGCGAATGAAGAtctgatttttacttttt
caaaataatggGTAATTAGTGCAATTTGTTTTTAGTTAATTATGTAATCT
GATTTTACAACACACtggttatttggacgttatttCTACCCCATGAAAAG
GCTCTGAGTGGCCTCTCCAAGTCCGAAANgagatgctttgttgtcttttt
aatttttgtgtaaacttgcatatgttttgcatactttccaactaaatcca
accacggctttttcgttcctctatttttgcatacaattcaagatgNctga
aaaaaataattataaatatCAAATTGACAACAATAACTGACAACACACAC
ACCCAGCACAATGTATTATTCAGTGCAGATTGGAGATACAATCTTCACTG
TTCTGAATCGATACCAAAATCTTCATCCCATTGGTTCTGGTGCTCAAGGA
ATGGTCTGGTAAGAtatgattttttgtttattttttgacaGCTCAATCCA
ATCACAACAGTATAAAACCCACACATCCCTTTGAAAAGAATGACAAATAT
CAATtctgtttaaaaaatgacattaaATCATTGAGATTTGGTGCAAAGTG
TGCTGCTTCTCGCGTTACaacataatagacctttttgccgCCTTTCAGAG
ATATATGTCGCCTTTCcatccatccgccatattgaattgtatgcaaaaat
tatggtggccgaattgccgtggtgaaattcccttggaaagtatgcaaaac
atatgcaaaaagaaagtattaatataaaacttataTACATGCatcataat
tggcattatattaaagtgtgatcttgtagaagaaagattaaatttgcttc
tcttgaaaactaaaaataattatattcgctcatctcNAAAAGATATGTTT
AAATCCTGGATATGCAACTGGCAACCAAGAAAATCCCAGGTGTCCGAGGG
CATCATCAGGGTTGTATTGAAATGGTCAGGATAAAAGAGGTTTTTGGGTT
GGTTGGCAAActatatcatccaccaggatgcatcctctNGAGCTGAAAAA
TCATCAGCAAAGGTagaaaataatccttattcggctgacggtaaattatt
ctcctgggaatagagccgccaaatgatcaaatcaaaacattgataatgtg
taacgtcataattactgcttttcagtttgcgtgttttgaaagtttgatgt
gtgtactccgtcttcgtggaatttcttaatggcatgaaaacagaatatgc
tatgNgactgttttctaagtatttttctgaaatttgcccgtatCGGTGAA
ATGggtctccgaccccggctcgaaccaccaaatgcaagcaaccttggttt
tcaaacccaatgcctaaccgcttgCGTCAACAAGACACGGCAGAAAGCTG
TCATTTACAAATACTTATactatagcgtgtaatttacagacctttattaa
gctcccaaccctactggtgcccctacaaggatccctacgggatcctaagt
taggtctcagggtacgaatgcccctaagaaggccttctgccttatattgt
gactctcgagctccaaccctaaccctaactgataagaaCCGAACCTGACC
AAACCCCTGTCTTGGTCcacagattgaaaaatttcacttgcatcctggtg
gatgatatcgtctgccaaccttTTGGGTTAAGAGTGATTTATTTTCACTC
TAAATTTTTAGCTTTGAAAACAAAGCTAGCAGGGAAAATTATATAGGTTA
TTCAAACTGATTGAACAGCAGTGGTACTGTAGTGGTCTGAAGGGGCTCTT
CCAGAGATGGGTCTCCAATTGACAATCTTGATATTGAAAAAGTCACAGAC
AACTGCCCCGCCCATGTTTAGGGCTTGTATGGGCCAAGTTTTTAGAGGCG
AAAAACCAAAGTTTTGTGGCCTGAACATTAAATGTTTGAGCTAAATAATG
ATTTGCTATTTTGGCCCAAACATGACCTGAAAAAGTTCAAAGTATGTTCT
ATCCATACCGTGCGTGGATATTTATTCTGCCACAGCAAACATCATTCCAC
ATTTGACGTTAGGGATTTTGCCACTTGACATTCAAACCAAAAACACCCGA
GAGATTTGACTGAAATGAATATCAAAAAAGAATTCTTTAGAAATACCAAC
AGTCTGGTACATCCTTAGAAATTGCACAAGGTTTTCCTTACCCTGTATAA
ATGCAATATGATGTCTCAAGCATAACATGCTAATAAGTCTGGAAATTACG
CAAAGCTTATGCCAAATCATAAACTGCATTCAGATGGCAATACAAAAGAC
AGTGTTCCAACTCATACTGAATATATTCTGCATATACTGTAGTGTGCACC
ATTTCCAGACTGGCATGCTAATGTGacctttaaatcaaaattggcaaaaa
aggAATCGAAAAAACAGCTCCAACGTAAAAGTAGTGTAATCGTATTAAAG
GAAAATAATCTTGAAATGTGCAAGCAAAAAATGACCCATATAATTAGATA
TATCCAATTTTCTGCAAATACAAGAAGAACCCCATGCAATTGAAAGGATG
TTCCTAACTGTCCAATGGGAAGAAAGGGCAATCACAGTACGTTGAataag
aaattaaaataaaaaattcaatccATCATACTCTACTTTTTCCATTCTAA
AATTTGGACAGTTATGTAGCAGTTTAATAAGGGcgggcattttcaaaaag
ttagcTTAAAAAGGGCAGATAAGGTAACTGCTTCGTTGTAACTAAAATTT
TCTATTATTTAGTGCTGCTTATGATAGTGTCACCAAAGAGAAGGTTGCAA
TCAAAAAGTTGTCAAGACCATTCCAAAATGTAACACATGCAAAGAGAGCC
TTCAGAGAACTAAAACTAATGAAGATCACAAATCacaaaaatgtaagaaa
atttttaacagAACAGTGCTTTTAATAGTTCTTTTGTTGCAAATAAATTT
GTGATAAAACTGTGCTTTTTCCTGAATTGGCGATATTATGACCAAATTTG
CCTTAAAAGGGTACATTTGTGTACTTTGAAGAAACAATTTTTATGGTAAT
ATAAGAGATCACTTGTTTAATAAGTTTTTATTCCTTTTCAGATAATAGGA
CTTTTAAATGTATTCACTCCAGATAAATCACTAGAAGAATTTCAAGATTT
GTAAGTTATTAAATGTATTTTGTTTAATAATTAAGTCAAACTGTAGTAGA
TTTTTATGCTTCTTTTTCATCTGTTTTATAACACACTTTCTGAAATAAAT
TTTATCTACCTTAATCCTTATTGATAATTCTTCGACAATGTTTACTTAAT
TGAATGTCTTTATCCCTCTAATTTtaggtatttttcatttttgcgcTTCt
ataatttgtgttttttgatgaaaagtatAGGTTAAGAGGGCATATAGAGG
ATTTATTTCTTATGGACAGCTCAAAGATGAGAATTCTAcacatttttaat
aatttctaaCTTGTGCTTCTTTTAATATTTGTGCATCTTTCTGCGCAAAA
AATGAAAGGTACACAAAAATTAATGAGATTAAGGTACTTCAATATCTTCT
AAAGTGCTACTTTGcctaaaaaatagcaaaataacaAAACGTATTAGGGA
CAATCCTCAAGACTTTTgtacaatttttcaaagtctaTGCCACTTCACTT
TTTAAGATATCTGGTCATGGAACTCATGGACGCAAGTTTATGTCAAGTTG
TTCAAATGGATCTAGATCATGAACGTTTATCATATTTATTATATCAGATG
TTATGTGGTATAAAGGTAAAGCCTTAATAAAACAATATTGGTGTCAACTT
AACTGAAACAGTAGCCTAGCTTATTTCATAAAACTTGTCCGAAATGACTT
TAGTATAGCTTGAGACCAGAGTGTTATGGGATGACAACAATAtgaagaaa
attcttcagattttaaatttacctttttctttttcttagcATTTGCATTC
TGCTGGCATCATTCACAGGGTAATTCAAGAAAATgataactttaattttg
aacATATATGAGTCATTACAAGCAATTTGAAATACAAGTGAAATGGAACA
GTCGTGAGATGttctaaaaaaatgttcaattcaggcaaattttgaatttt
tagtaTTTGCTTGAAATTCCTTTCTTGGCGTATACAAATAtcctcaattt
tttttcaggatttgAAACCAAGTAATATTGTTGTAAAATCAGATTGTAGT
TTAAAAGTAAGTACAGCTtcctttttcaaatatttaagGTGTTACCCAAT
ATTCCATGCTATGTACTTTGACTTTTGGAACTAGTGTCAAATATTCTTTA
GCCtaattaaaacaaaagaaaataaatgaaaagtgaaattCTCTTTGAAT
GATTTCCTTTGACTGAACTTTTCTCCTGTATTCTTCTCTTAGATTTTGGA
CTTTGGATTAGCAAGGACTGCAGGCTCAGCCTTTACTATGACACCTTATG
TTGTGACGAGATATTATCGTGCACCTGAAATCATCTTGGGTATGGGATAT
TCCGAGAACGTAGATGTATGGTCCATAGGTTGTATATTTGGAGAAATGAT
CCGTGGTTCTGTCATGTTTCCTGGNAGAGAACGTAGATGTATGGTCTATA
GGTTGTATATTTGGAGAAATGATCCGTGGTTCTGTCATGTTTCCTGGTAC
CGACCATATTGATCAATGGAACAAAGTTACAGAATTATTATCGACACCTC
CACAAGCTTTTTTTGACCGGTTACAACCCTCTGTAAGCTTATCCTGTATT
TGAATTTAtatctgttttcttttttttgaattcatGCATTAAAGTTATAA
TATAAGAAACAACAATTTTTCTGTGACATTCTATAATTTTGATTGAACCA
TAGTAAAAAAGTTGACGAAATCttgaatgtcttcattttgaaaaatgttt
cccaCATCAACCTTGCATCAATATTCATCtttttttcaaaggaattttct
ctgtacaaaaaaaaagttaatctTCCTACTTACATTATGATTTCGTTTTG
TAATCTTACCAGGTTCGAATGTACTGTGCAAATCGTCCAAGGCAGAAAGG
TTATAATACAGAAGAACTTTTCCCTGAAGAGCTCTTCCCCTCTGGAAACA
GACAAAAAGGTACAACTTTTCCTTTAGCCTATGTTAATATAATTGTATGC
TATCAAGATAATGAgttgttgaacggtgaaaaagaattttgatttttccc
gacatgtttcggactcggtccgttctcaagggaatcAAGATAATGAGata
caaaaaatttcatttccaaacaACTATGCTTGAAAGTCAGTGAGTGTCCC
TCAAGGCAACATTCCCAATTTTAAAGATCTATAGAGTTGGTGAAAAttaa
taattgaaaaatttagttggtttatttctatttttctgttattttctgCA
GGGAATTCAGAGGGAATTGCATATTTGGTTACGATTTAGATAAACGCCAT
CATAGATAAACTCATGAGATCATAGTTTGATTTCTTACTAATGAAATATA
TTTGAATTTTAGTAATACAAGCACGAGATTTACTGACGAAGAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007644	XLOC_007644	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000171	supercontig	sc0000171:347329..353021 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.22759	3.1067	5.29942	2.8507	50.3151	39.5621	38.3824	45.8156	16.6285	18.3754	16.8804	16.8364	14.5709	17.8115	16.5995	21.3718	16.7372	16.459	12.1703	13.9125	12.916	15.4498	10.399	12.3028	7.56612	11.3025	15.0419	11.6819	16.5667	19.2232

Blast

[Close]

BLAST of TCONS_00013677 vs. Swiss-Prot (Human)
Match: MK08 (Mitogen-activated protein kinase 8 OS=Homo sapiens GN=MAPK8 PE=1 SV=2)

HSP 1 Score: 468.774 bits (1205), Expect = 4.782e-162
Identity = 218/291 (74.91%), Postives = 251/291 (86.25%), Query Frame = 1

Query:  514 YYSVQIGDTIFTVLNRYQNLHPIGSGAQGMVCAAYDSVTKEKVAIKKLSRPFQNVTHAKRAFRELKLMKITNHKNIIGLLNVFTPDKSLEEFQDLYLVMELMDASLCQVVQMDLDHERLSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCSLKILDFGLARTAGSAFTMTPYVVTRYYRAPEIILGMGYSENVDVWSIGCIFGEMIRGSVMFPGTDHIDQWNKVTELLSTPPQAFFDRLQPSVRMYCANRPRQKGYNTEELFPEELFPSG---NRQKVIQARDLLTK 1377
            +YSV+IGD+ FTVL RYQNL PIGSGAQG+VCAAYD++ +  VAIKKLSRPFQN THAKRA+REL LMK  NHKNIIGLLNVFTP KSLEEFQD+Y+VMELMDA+LCQV+QM+LDHER+SYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDC+LKILDFGLARTAG++F MTPYVVTRYYRAPE+ILGMGY ENVD+WS+GCI GEM+   ++FPG D+IDQWNKV E L TP   F  +LQP+VR Y  NRP+  GY+ E+LFP+ LFP+    N+ K  QARDLL+K
Sbjct:   10 FYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDLWSVGCIMGEMVCHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSK 300

The following BLAST results are available for this feature:

BLAST of TCONS_00013677 vs. Swiss-Prot (Human)

BLAST of TCONS_00013677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MK08	4.782e-162	74.91	Mitogen-activated protein kinase 8 OS=Homo sapiens...	[more]

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TCONS_00013677 (transcript) - C. hemisphaerica