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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013689 ID=TCONS_00013689|Name=TCONS_00013689|organism=Clytia hemisphaerica|type=transcript|length=4282bpRun BLAST on NCBI protein sequence of TCONS_00013689-protein >TCONS_00013689-protein ID=TCONS_00013689-protein|Name=TCONS_00013689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1183bp MTDVIWQQHNYHRPEPQNSKVQLKHYDSDQPERIHFNVSDDKLTRNRFSNRun BLAST on NCBI transcript from alignment at sc0000171:495984..517356+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013689 ID=TCONS_00013689|Name=TCONS_00013689|organism=Clytia hemisphaerica|type=transcript|length=21373bp|location=Sequence derived from alignment at sc0000171:495984..517356+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000171:495984..517356+ >TCONS_00013689 ID=TCONS_00013689|Name=TCONS_00013689|organism=Clytia hemisphaerica|type=CDS|length=35520bp|location=Sequence derived from alignment at sc0000171:495984..517356+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013689 vs. Swiss-Prot (Human)
Match: PUM2 (Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2) HSP 1 Score: 578.17 bits (1489), Expect = 0.000e+0 Identity = 273/340 (80.29%), Postives = 300/340 (88.24%), Query Frame = 1
Query: 2707 KLLEDFRNNRYPNLQLHDLQRHIVEFSQDQHGSRFIQQKLERASVLEKSMVFNEILTAAYSLMTDVFGNYVIQKFFEFGSPDQKMLLAQRIKGHVLPLALQMYGCRVIQKALETIPCDMPIHGELVRELDGHVLKCVKDQNGNHVVQKCIECVDSNQLQFIIDAFKGQVVYALSTHPYGCRVIQRILEHCTIDQTSPILAELHEHTERLIQDQYGNYVIQHVLEHGSPDDKSAIVNMVRGNVLLLSQHKFASNVIEKCVTHASRAERSRLIEEVCNYVDGPHGALYSMMKDQYANYVVQKMIDVAEPLQRKVLMMKIRPHVATLRKYTYGKHILAKLETF 3726
+LLEDFRNNR+PNLQL DL HIVEFSQDQHGSRFIQQKLERA+ E+ MVFNEIL AAY LMTDVFGNYVIQKFFEFGS DQK+ LA RI+GHVLPLALQMYGCRVIQKALE+I D + E+V+ELDGHVLKCVKDQNGNHVVQKCIECV LQFIIDAFKGQV + LSTHPYGCRVIQRILEHCT +QT PIL ELH+HTE+L+QDQYGNYVIQHVLEHG P+DKS IV+ +RG VL LSQHKFASNV+EKCVTHASRAER+ LI+EVC DGPH ALY+MMKDQYANYVVQKMID+AEP QRK++M KIRPH+ TLRKYTYGKHILAKLE +
Sbjct: 709 RLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQV-FVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKY 1047 The following BLAST results are available for this feature:
BLAST of TCONS_00013689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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