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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013695 ID=TCONS_00013695|Name=TCONS_00013695|organism=Clytia hemisphaerica|type=transcript|length=2382bpRun BLAST on NCBI protein sequence of TCONS_00013695-protein >TCONS_00013695-protein ID=TCONS_00013695-protein|Name=TCONS_00013695-protein|organism=Clytia hemisphaerica|type=polypeptide|length=551bp MAIFLALLLVFSVFDHTIAIEKTWIHTTLWNDVLNWQPPHLPCADGTVHLRun BLAST on NCBI transcript from alignment at sc0000171:71104..81282- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013695 ID=TCONS_00013695|Name=TCONS_00013695|organism=Clytia hemisphaerica|type=transcript|length=10179bp|location=Sequence derived from alignment at sc0000171:71104..81282- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000171:71104..81282- >TCONS_00013695 ID=TCONS_00013695|Name=TCONS_00013695|organism=Clytia hemisphaerica|type=CDS|length=23184bp|location=Sequence derived from alignment at sc0000171:71104..81282- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00013695 vs. Swiss-Prot (Human)
Match: AMNLS (Protein amnionless OS=Homo sapiens GN=AMN PE=1 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 5.635e-25 Identity = 87/336 (25.89%), Postives = 144/336 (42.86%), Query Frame = 2
Query: 335 MAIFLALLLVFSVFDHTIAIEKTWIHTTLWNDVLNWQPPHLPCADGTVHL-SDGVV--------FISNITLPXXXXXXXXXXXXFDANSEIPLGKPVNAAPDTSNPNCGKNFLPV-----QHSWHNPLNWKSGDERDTGIPYI--ERVPCHEDDVVFPEHNSFVAKM---SRSVSVNSVQLRGKKLTENAELQSYLSSEDEKDNFIYENNAKLSVQSDSCP-KAGCICEGYTDKTYNQMVCDSF------QCPKINCPNLKVKPTGDCCAHCGCTVDFKFNSGFDLEKCQQALMNYTAHISRTEFDKVQILLSDSQQRSVTNEMVDEISRLLQQQG 1264
M + +LL + T A+ K W+ T ++ NW PCA G V +D +V +S++ LP D + G + S+ +CG V + SWH+P W+SGDE G+ ++ ERVPC DDV FP SF + + V V S+ G+ T + +L +L+S + F LSV + C +GC+C + + +C + +CP+ C + ++P G CC CG V FDLE+ + +++ + ++ +Q+ +S + S E EI +L + G
Sbjct: 1 MGVLGRVLLWLQLCALTQAVSKLWVPNTDFDVAANWSQNRTPCAGGAVEFPADKMVSVLVQEGHAVSDMLLP------------LDGELVLASGAGFGVSDVGSHLDCGAGEPAVFRDSDRFSWHDPHLWRSGDE-APGLFFVDAERVPCRHDDVFFPPSASFRVGLGPGASPVRVRSISALGRTFTRDEDLAVFLASRAGRLRF--HGPGALSVGPEDCADPSGCVCGNAEAQPW---ICAALLQPLGGRCPQAAC-HSALRPQGQCCDLCGAVVLLTHGPAFDLERYRARILD--TFLGLPQYHGLQVAVSKVPRSSRLREADTEIQVVLVENG 315 The following BLAST results are available for this feature:
BLAST of TCONS_00013695 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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