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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013710 ID=TCONS_00013710|Name=TCONS_00013710|organism=Clytia hemisphaerica|type=transcript|length=5250bpRun BLAST on NCBI protein sequence of TCONS_00013710-protein >TCONS_00013710-protein ID=TCONS_00013710-protein|Name=TCONS_00013710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1025bp MYTISSKLLPGRTIVRNTIRTLQSRHLASTQNRQQKNNRTSSNNRRYGTARun BLAST on NCBI transcript from alignment at sc0000171:192637..218995- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013710 ID=TCONS_00013710|Name=TCONS_00013710|organism=Clytia hemisphaerica|type=transcript|length=26359bp|location=Sequence derived from alignment at sc0000171:192637..218995- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000171:192637..218995- >TCONS_00013710 ID=TCONS_00013710|Name=TCONS_00013710|organism=Clytia hemisphaerica|type=CDS|length=67716bp|location=Sequence derived from alignment at sc0000171:192637..218995- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013710 vs. Swiss-Prot (Human)
Match: ODO1 (2-oxoglutarate dehydrogenase, mitochondrial OS=Homo sapiens GN=OGDH PE=1 SV=3) HSP 1 Score: 1249.19 bits (3231), Expect = 0.000e+0 Identity = 617/1036 (59.56%), Postives = 758/1036 (73.17%), Query Frame = 3
Query: 153 MYTISSKLLPGRTIVRNTIRTLQSRHLASTQNRQQKNNRTSSNNRRYGTAVGAEPFINGTSSSYVEEMYDSWKEDPTSVHKSWDIFFRNAENGAVPGQAYQSPPEIYGHPVHYTTEXXXXXXXXXXXXXXXXXXXXXXXLIQNHLAVYSLIRAYQLRGHNLADLDPLGILHADLDSRVPEELI-----LENWGLSEKDLDKEFQLPPTAFIGKSGEKLKLREIVNRLNNVYCKSMGLEYMFLTSLKKTNWIRKRFEEQGVMEINAEEKRRLLARLIRSHEFESYLAKKWTSEKRFGLEGCEVLIPALKQIIDVSSTLGVESVIMGMPHRGRLNVLANVCRKPLEQLFTQFNPSLEPEDEGSGDVKYHLGMTHERLNRTNNKIVQLAVCANPSHLEAVDPIVQGKTRAEQFYRGDTKGRQVMSILLHGDAAFAGQGVVYETFHLSDLPHYTTHGTIHVVVNNQVGFTTDPRMSRSSPYCTDVAKVVQCPIFHVNADDPEAVMHVCKVASEYRAEFGKDVVIDLVCYRKNGHNEGDNPDFTQPLMYQRIRKQKPVMEKYAAKVIADGIVTDAEYQEERSKYDKILDESFENAKKRPEMKIADWLDSKWGGFFKKHDLLGELK-----STGASMDRLIDLGNKFSTPPA-NFNLHNGLKRVLKARKEMIDEGVADWAIGEALAFASLLTEKIHVRISGQDVERGTFSHRHHVLHDQKVDQKYHSVMNHMSDDQAQYSVCNSSLSEYAVLGFELGYSMTNPYSLVVWEAQFGDFMNTAQCIIDQFVGSGQDKWVRQSGLVMLLPHGMEGMGPEHSSARPERFLQMTKEDPDTYPDYPADEFELRQNYNINWFICNISTPANFFHALRRQVYLDFRKPLVVMSPKXXXXXXXXXXXXXEMADGTFFKRVIPEEGVATQNGEQVKKLVFCTGKIYYDIRDKRDEQNLSSDIAVARIEQLSPFPFDLVREECAKYPNASIQWVQEEHKNYGYWSHVQPRIETAAGDNRRAMYGGREVAASPATGVKKTHVEEHNAVLDSALAL 3227
+ T ++KL P T++T +QNR RT R Y V AEPF++GTSS+YVEEMY +W E+P SVHKSWDIFFRN GA PG AYQSP + A + + ++ + V L+++HLAV SLIRAYQ+RGH++A LDPLGIL ADLDS VP ++I L +GL E DLDK F LP T FIG L LREI+ RL YC+ +G+E+MF+ L++ WIR++FE G+M+ EEKR LLARL+RS FE +L +KW+SEKRFGLEGCEVLIPALK IID SS GV+ VIMGMPHRGRLNVLANV RK LEQ+F QF+ LE DEGSGDVKYHLGM H R+NR ++ + L++ ANPSHLEA DP+V GKT+AEQFY GDT+G++VMSILLHGDAAFAGQG+VYETFHLSDLP YTTHGT+HVVVNNQ+GFTTDPRM+RSSPY TDVA+VV PIFHVN+DDPEAVM+VCKVA+E+R+ F KDVV+DLVCYR+NGHNE D P FTQPLMY++IRKQKPV++KYA +++ G+V EY+EE SKYDKI +E+F +K + I WLDS W GFF L G+ + STG + D L +GN S+ P NF +H GL R+LK R EM+ DWA+ E +AF SLL E IH+R+SGQDVERGTFSHRHHVLHDQ VD++ MNH+ +QA Y+VCNSSLSEY VLGFELG++M +P +LV+WEAQFGDF NTAQCIIDQF+ GQ KWVRQ+G+V+LLPHGMEGMGPEHSSARPERFLQM +DPD PD F++ Q Y+ NW + N STP NFFH LRRQ+ L FRKPL++ +PKSLLR RSS DEM GT F+RVIPE+G A QN E VK+L+FCTGK+YYD+ +R +++ +A+ RIEQLSPFPFDL+ +E KYPNA + W QEEHKN GY+ +V+PR+ T + Y GR+ AA+PATG KKTH+ E +LD+A L
Sbjct: 4 LRTCAAKLRP--LTASQTVKTF-------SQNRPAAA-RTFQQIRCYSAPVAAEPFLSGTSSNYVEEMYCAWLENPKSVHKSWDIFFRNTNAGAPPGTAYQSPLPL----------SRGSLAAVAHAQSLVEAQPNVDKLVEDHLAVQSLIRAYQIRGHHVAQLDPLGILDADLDSSVPADIISSTDKLGFYGLDESDLDKVFHLPTTTFIGGQESALPLREIIRRLEMAYCQHIGVEFMFINDLEQCQWIRQKFETPGIMQFTNEEKRTLLARLVRSTRFEEFLQRKWSSEKRFGLEGCEVLIPALKTIIDKSSENGVDYVIMGMPHRGRLNVLANVIRKELEQIFCQFDSKLEAADEGSGDVKYHLGMYHRRINRVTDRNITLSLVANPSHLEAADPVVMGKTKAEQFYCGDTEGKKVMSILLHGDAAFAGQGIVYETFHLSDLPSYTTHGTVHVVVNNQIGFTTDPRMARSSPYPTDVARVVNAPIFHVNSDDPEAVMYVCKVAAEWRSTFHKDVVVDLVCYRRNGHNEMDEPMFTQPLMYKQIRKQKPVLQKYAELLVSQGVVNQPEYEEEISKYDKICEEAFARSKDEKILHIKHWLDSPWPGFFT---LDGQPRSMSCPSTGLTEDILTHIGNVASSVPVENFTIHGGLSRILKTRGEMVKNRTVDWALAEYMAFGSLLKEGIHIRLSGQDVERGTFSHRHHVLHDQNVDKRTCIPMNHLWPNQAPYTVCNSSLSEYGVLGFELGFAMASPNALVLWEAQFGDFHNTAQCIIDQFICPGQAKWVRQNGIVLLLPHGMEGMGPEHSSARPERFLQMCNDDPDVLPDLKEANFDINQLYDCNWVVVNCSTPGNFFHVLRRQILLPFRKPLIIFTPKSLLRHPEARSSFDEMLPGTHFQRVIPEDGPAAQNPENVKRLLFCTGKVYYDLTRERKARDMVGQVAITRIEQLSPFPFDLLLKEVQKYPNAELAWCQEEHKNQGYYDYVKPRLRTTISRAKPVWYAGRDPAAAPATGNKKTHLTELQRLLDTAFDL 1016 The following BLAST results are available for this feature:
BLAST of TCONS_00013710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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