TCONS_00013713 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013713
Unique NameTCONS_00013713
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013713 ID=TCONS_00013713|Name=TCONS_00013713|organism=Clytia hemisphaerica|type=transcript|length=1475bp
CAACtttaaactttttctaaaaattttaatatttacTGTTGTTTTTGCAG
AGTAAAATgcttgaaaataaagaaaaaggagaaagtaAAAACACTTTACA
AACAAATACAACAATAAAACATGACACAAAAGGTTGGCACGAGTTTGCTG
CTGGCGGCTGTGCTGCTGTGGTTAATATAATGGTGACATTCCCTGTATAT
AAGACAATGTTACGTCAACAAATTGATGGGATAACGATGCTCAAAGCAGT
TACTCAAATCAAGCATGAAGGACTTTTCAAATTATATCGTGGAGTTGGAC
CTCCTTTAATGCAAAAAGGTATCAGTTGTTCCATCATGTTCGGGTCTTAT
CATTCCatacaaaaaaaattggttgaaaCATATCCGAGGACGAATGAAAC
TTTCTTGAAAATAGTTGCAGCAATGACGGCTGGTAGTTTTGAGTCCTTGA
TGACTCCTTTTGAACGTGTACAAACCTTACTTGCCATTTCTGAACATAAA
GATTACGTCAAAGTTCATAACACAGTACATGCtttcttgaaaataaagaa
acatcataattttaaagaatattatCGTGGATTTACTGCTATTTTGCTTA
GGAATGGTCCGAGCACTGCTTTGTTTTTCTTATTGAGAGAACCTATAAAA
GACTTGCTACCTACGGCGGAATCAGGATTGACTAATGTTGCTGAGGATTT
TGTTAGTGGAGCAGTGCTTGGTGCATCTATCAGCACTTTAGCCTATCCAT
TAAACGTTGTAAAGTCAAACATGCAGAAGAGGCTGGGTGAGGAATACAGA
GGCATAATGTACACTTTTCGTGAAGTTTATAATCAACGTGAAAGAAGTAT
TCGGAGAATTTATTTTGGTGTGAGCTTAAATTTTTCGAGAGCTTTGATTT
CATGGGGAATTATCAATGCAActtatgaaattttcattaaattcttAAAT
GAGGTGGATCCTTAATCGAGATGTTCCTTTGAGCTTGTTGTTGGTGGATT
CGTGAGTTATGTTTTTCATTATTATGAAAACTAGACGTttcgaatttcaa
aaaacttactAGACCATGCTGTACAGATTTACTATCAATTTTAGAAATgt
tttaaatgaatttatttagatgattatttttctgatattatagatatttt
tatcttaacaacattgttaattctttttatttacaaTGATCGCGAAAGGT
GTAGTAAAAGCAAgtttatgtgtgtttttctgcgatgAAGATGGTTAGCT
TTCAATTTAtctagatcctgactgactgaggtcGGCGGTAAATCAGCAcg
tttaccgtcctcgattttgtgggTCAAAACAGCGATATATTCCAAATCGC
TACAGTCAACctGTCGTCCTGAAAAGCAcggatacataaactcgcttatA
GTTTATGCGACGGAAGGTACTTTTTAAGTTGACTCGAACCCAACTATCTA
TGACTAAGGTTTGTAAATACCTCCG
Run BLAST on NCBI

protein sequence of TCONS_00013713-protein

>TCONS_00013713-protein ID=TCONS_00013713-protein|Name=TCONS_00013713-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
MLENKEKGESKNTLQTNTTIKHDTKGWHEFAAGGCAAVVNIMVTFPVYKT
MLRQQIDGITMLKAVTQIKHEGLFKLYRGVGPPLMQKGISCSIMFGSYHS
IQKKLVETYPRTNETFLKIVAAMTAGSFESLMTPFERVQTLLAISEHKDY
VKVHNTVHAFLKIKKHHNFKEYYRGFTAILLRNGPSTALFFLLREPIKDL
LPTAESGLTNVAEDFVSGAVLGASISTLAYPLNVVKSNMQKRLGEEYRGI
MYTFREVYNQRERSIRRIYFGVSLNFSRALISWGIINATYEIFIKFLNEV
DP
Run BLAST on NCBI

transcript from alignment at sc0000171:221879..223617-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013713 ID=TCONS_00013713|Name=TCONS_00013713|organism=Clytia hemisphaerica|type=transcript|length=1739bp|location=Sequence derived from alignment at sc0000171:221879..223617- (Clytia hemisphaerica)
CAACTTTAAACTTTTTCTAAAAATTTTAATATTTACTGTTGTTTTTGCAG
AGTAAAATGCTTGAAAATAAAGAAAAAGGAGAAAGTAAAAACACTTTACA
AACAAATACAACAATAAAACATGACACAAAAGGTTGGCACGAGTTTGCTG
CTGGCGGCTGTGCTGCTGTGGTTAATATAATGGTGACATTCCCTGTATAT
AAGACAATGTTACGTCAACAAATTGATGGGATAACGATGCTCAAAGCAGT
TACTCAAATCAAGCATGAAGGACTTTTCAAATTATATCGTGGAGTTGGAC
CTCCTTTAATGCAAAAAGGTATCAGTTGTTCCATCATGTTCGGGTCTTAT
CATTCCATACAAAAAAAATTGGTTGAAACATATCCGAGGACGAATGAAAC
TTTCTTGAAAATAGTTGCAGCAATGACGGCTGGTAGTTTTGAGTCCTTGA
TGACTCCTTTTGAACGTGTACAAACCTTACTTGCCATTTCTGAACATAAA
GATTACGTCAAAGTTCATAACACAGTACATGCTTTCTTGAAAATAAAGAA
ACATCATAATTTTAAAGAATATTATCGTGGATTTACTGCTATTTTGCTTA
GGAATGGTCCGAGCACTGCTTTGTTTTTCTTATTGAGAGAACCTATAAAA
GACTTGCTACCTACGGCGGAATCAGGATTGACTAATGTTGCTGAGGATTT
TGTTAGTGGAGCAGTGCTTGGTGCATCTATCAGCACTTTAGCCTATCCAT
TAAACGTTGTAAAGTCAAACATGCAGAAGAGGCTGGGTGAGGAATACAGA
GGCATAATGTACACTTTTCGTGAAGTTTATAATCAACGTGAAAGAAGTAT
TCGGAGAATTTATTTTGGTGTGAGCTTAAATTTTTCGAGAGCTTTGATTT
CATGGGGAATTATCAATGCAACTTATGAAATTTTCATTAAATTCTTAAAT
GAGGTGGATCCTTAATCGAGATGTTCCTTTGAGCTTGTTGTTGGTGGATT
CGTGAGTTATGTTTTTCATTATTATGAAAACTAGACGTTTCGAATTTCAA
AAAACTTACTAGACCATGCTGTACAGATTTACTATCAATTTTAGAAATGT
TTTAAATGAATTTATTTAGATGATTATTTTTCTGATATTATAGATATTTT
TATCTTAACAACATTGTTAATTCTTTTTATTTACAATGATCGCGAAAGGT
GTAGTAAAAGCAAGTTTATGTGTGTTTTTCTGCGATGAAGATGGTTAGCT
TTCAATTTATCTAGATCCTGACTGACTGAGGTCGGCGGTAAATCAGCACG
TTTACCGTCCTCGATTTTGTGGGTCAAAACAGCGATATATTCCAAATCGC
TACAGTCAACATTTAATGATGACCAATACACGAGAAGAGATCGCCCTGCC
AAGTCTTTGTTGGATCAAGTTGTTGGTCATAAAATGATTTCTATTAGTCA
ATTTTGTTCTCTTGCCTTAAGCAAGAAGTAATGATGTGAATTTGAATTTA
ATTAGTTCGACATGGGAAAATACCTCTAAGTGAATAGGCCTCACGGTGAG
ATACTTTCCCATGTCCAACCATGTCCAGTAATGGGCTGTTGTAGAATTTT
ATTATTATTATTATTATTATTAACCTGTCGTCCTGAAAAGCACGGATACA
TAAACTCGCTTATAGTTTATGCGACGGAAGGTACTTTTTAAGTTGACTCG
AACCCAACTATCTATGACTAAGGTTTGTAAATACCTCCG

Coding sequence (CDS) from alignment at sc0000171:221879..223617-

>TCONS_00013713 ID=TCONS_00013713|Name=TCONS_00013713|organism=Clytia hemisphaerica|type=CDS|length=909bp|location=Sequence derived from alignment at sc0000171:221879..223617- (Clytia hemisphaerica)
ATGCTTGAAAATAAAGAAAAAGGAGAAAGTAAAAACACTTTACAAACAAA
TACAACAATAAAACATGACACAAAAGGTTGGCACGAGTTTGCTGCTGGCG
GCTGTGCTGCTGTGGTTAATATAATGGTGACATTCCCTGTATATAAGACA
ATGTTACGTCAACAAATTGATGGGATAACGATGCTCAAAGCAGTTACTCA
AATCAAGCATGAAGGACTTTTCAAATTATATCGTGGAGTTGGACCTCCTT
TAATGCAAAAAGGTATCAGTTGTTCCATCATGTTCGGGTCTTATCATTCC
ATACAAAAAAAATTGGTTGAAACATATCCGAGGACGAATGAAACTTTCTT
GAAAATAGTTGCAGCAATGACGGCTGGTAGTTTTGAGTCCTTGATGACTC
CTTTTGAACGTGTACAAACCTTACTTGCCATTTCTGAACATAAAGATTAC
GTCAAAGTTCATAACACAGTACATGCTTTCTTGAAAATAAAGAAACATCA
TAATTTTAAAGAATATTATCGTGGATTTACTGCTATTTTGCTTAGGAATG
GTCCGAGCACTGCTTTGTTTTTCTTATTGAGAGAACCTATAAAAGACTTG
CTACCTACGGCGGAATCAGGATTGACTAATGTTGCTGAGGATTTTGTTAG
TGGAGCAGTGCTTGGTGCATCTATCAGCACTTTAGCCTATCCATTAAACG
TTGTAAAGTCAAACATGCAGAAGAGGCTGGGTGAGGAATACAGAGGCATA
ATGTACACTTTTCGTGAAGTTTATAATCAACGTGAAAGAAGTATTCGGAG
AATTTATTTTGGTGTGAGCTTAAATTTTTCGAGAGCTTTGATTTCATGGG
GAATTATCAATGCAACTTATGAAATTTTCATTAAATTCTTAAATGAGGTG
GATCCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007657XLOC_007657Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013713-proteinTCONS_00013713-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013713-exon-sc0000171-1575043694:222258..223617TCONS_00013713-exon-sc0000171-1575043694:222258..223617Clytia hemisphaericaexon
TCONS_00013713-exon-sc0000171-1575043694:221879..221993TCONS_00013713-exon-sc0000171-1575043694:221879..221993Clytia hemisphaericaexon
TCONS_00013713-exon-sc0000171-1510915933:222258..223617TCONS_00013713-exon-sc0000171-1510915933:222258..223617Clytia hemisphaericaexon
TCONS_00013713-exon-sc0000171-1510915933:221879..221993TCONS_00013713-exon-sc0000171-1510915933:221879..221993Clytia hemisphaericaexon
TCONS_00013713-exon-sc0000171-1491911889:222258..223617TCONS_00013713-exon-sc0000171-1491911889:222258..223617Clytia hemisphaericaexon
TCONS_00013713-exon-sc0000171-1491911889:221879..221993TCONS_00013713-exon-sc0000171-1491911889:221879..221993Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000171supercontigsc0000171:221879..223617 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.5946	12.6354	3.84084	2.7397	2.75934	1.65679	4.35564	3.43641	3.12903	3.33579	20.5133	12.2035	3.78649	3.08259	2.56902	2.95784	5.56154	5.71778	7.73639	8.11088	6.93725	11.6789	14.3329	13.9963	6.69199	7.54756	8.67232	12.9412	13.6021	13.2836
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018108Mitochondrial_sb/sol_carrier
IPR023395Mt_carrier_dom
Blast
[Close]
BLAST of TCONS_00013713 vs. Swiss-Prot (Human)
Match: S2551 (Solute carrier family 25 member 51 OS=Homo sapiens GN=SLC25A51 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 3.868e-69
Identity = 116/269 (43.12%), Postives = 167/269 (62.08%), Query Frame = 3 
Query:  141 EFAAGGCAAVVNIMVTFPVYKTMLRQQIDGITMLKAVTQIKHEGLFKLYRGVGPPLMQKGISCSIMFGSYHSIQKKLVETYPRTNETFLKIVAAMTAGSFESLMTPFERVQTLLAISEHKDYVKVHNTVHAFLKIKKHHNFKEYYRGFTAILLRNGPSTALFFLLREPIKDLLPTAESGLTNVAEDFVSGAVLGASISTLAYPLNVVKSNMQKRLGEEYRGIMYTFREVYNQRERSIRRIYFGVSLNFSRALISWGIINATYEIFIKFL 947
             +  G CAA  N+ +TFP+ K + RQQ+ GI    A+ Q++ +G   LYRG+ PPLMQK  + ++MFG Y  +   L+  +    E     VAA+ AG+ E++ TP ERVQTLL   +HK + K  NT  AF K  K H   EYYRG   IL RNG S  LFF LR PIK+ LPTA +   ++  DF+ G +LGA +  L +P+NVVK+ +Q ++G E++     F++++ +R+R +  ++ G  LN+ R+LISWGIINATYE  +K +
Sbjct:   33 HYLCGCCAAFNNVAITFPIQKVLFRQQLYGIKTRDAILQLRRDGFRNLYRGILPPLMQKTTTLALMFGLYEDL-SCLLHKHVSAPEFATSGVAAVLAGTTEAIFTPLERVQTLL--QDHKHHDKFTNTYQAF-KALKCHGIGEYYRGLVPILFRNGLSNVLFFGLRGPIKEHLPTATTHSAHLVNDFICGGLLGAMLGFLFFPINVVKTRIQSQIGGEFQSFPKVFQKIWLERDRKLINLFRGAHLNYHRSLISWGIINATYEFLLKVI 297
The following BLAST results are available for this feature:
BLAST of TCONS_00013713 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S25513.868e-6943.12Solute carrier family 25 member 51 OS=Homo sapiens... [more]
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