Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013716 ID=TCONS_00013716|Name=TCONS_00013716|organism=Clytia hemisphaerica|type=transcript|length=2048bpRun BLAST on NCBI protein sequence of HMG box containing transcription factor TCF >TCONS_00013716-protein ID=TCONS_00013716-protein|Name=HMG box containing transcription factor TCF|organism=Clytia hemisphaerica|type=polypeptide|length=484bp MPQLPTSTAEEYGAEDEIKQYTQEEGEESDSSTVDVVNDIKDDLLNEDGRRun BLAST on NCBI transcript from alignment at sc0000171:247416..255381- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013716 ID=TCONS_00013716|Name=TCONS_00013716|organism=Clytia hemisphaerica|type=transcript|length=7966bp|location=Sequence derived from alignment at sc0000171:247416..255381- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000171:247416..255381- >TCONS_00013716 ID=TCONS_00013716|Name=TCONS_00013716|organism=Clytia hemisphaerica|type=CDS|length=13095bp|location=Sequence derived from alignment at sc0000171:247416..255381- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00013716 vs. Swiss-Prot (Human)
Match: TCF7 (Transcription factor 7 OS=Homo sapiens GN=TCF7 PE=1 SV=3) HSP 1 Score: 153.295 bits (386), Expect = 1.443e-40 Identity = 72/97 (74.23%), Postives = 84/97 (86.60%), Query Frame = 3 Query: 870 KEPKRPHVKKPLNAFMLFMKEQRPKIAAEYTLKESAAINQILGKRWHALDKSEQAKYYELARKERAIHMQLYPGWSARDNYAQLGRKKKRPRDKNEE 1160 KE K+P +KKPLNAFML+MKE R K+ AE TLKESAAINQILG+RWHAL + EQAKYYELARKER +HMQLYPGWSARDNY G+KK+R R+K++E Sbjct: 262 KEAKKPTIKKPLNAFMLYMKEMRAKVIAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNY---GKKKRRSREKHQE 355 The following BLAST results are available for this feature:
BLAST of TCONS_00013716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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