TCONS_00013727 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013727
Unique NameTCONS_00013727
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2565

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013727 ID=TCONS_00013727|Name=TCONS_00013727|organism=Clytia hemisphaerica|type=transcript|length=2565bp
NTCTCCTCAAAGCTTAAGAATAATACATAGAAAgtagaaataataaaaaa
catgaatttgtttgtttattggATACATCTTGCAATGAAAAACACGaggg
gaaaaaaagaaaaggtatggatgcaaaaaattctttgtttatATTCCTAA
TcggttggaaaattttgaacCTGTTAGAATGACTGTTCTTGATGATAATG
CAATTGGGTTGAGGTTTTTATATGATGTTTAcataattagttattcaaaa
caataaagatgacgcgttctttagaaaacatGTAATAAGAGCTTTGTctg
aatagttaacgaccaatccaatgacgAGAATTCTTGCAAAATGTTCTTCT
CGACCCGATAAATGCTCTTCAAAAGACTCCCTTGCAGTCGTGTAGGATAT
ATATAATATGGTTGTCCGAAGTGGTGTAACGATCAACAATAACTCAGATG
TAATAGGCTCTTTTCGATTTTATTTAGCATCAGGGTTCCTAATTTTTGAT
TGCCTCTATCCTATGCTCGAGAAGGGATGCGTAATCTCCTCCgaataaaa
tgataaaacaaataATGTAAGAAAACTCTCATACCTCTGTAAGTGGCATA
TGCAACAGAGCAGTGATACTAATTAATCGCCAATCGATATCTGCATCNAT
GTAAGAAAACTCCCATACCTCTGGAAATGGCATATGCAACAGAGCAGTGA
TACCATGATAATTGTCAAACGATATCTGCATTCACGCAAACGATATCTTT
AAAAAGGTATTGCAACAGGATACCAAAAACTGATATGAGCAACGAGGCAT
TCATATCCACAAATATGCAACATATGTGCATCATAATCTCAAAACACTGA
TATCTGCAACAGAGCACGATAACCACAAATTGATAATAATGTCGGTACCA
GCAAATATAGCATCGATACCATGATTCGGTTGTTCTCAATTTTTACAcat
gaaaatgagaaaacaaattacaagattgcatcatgaaaaacttggatcaa
aaaaaagaacaaacatGCTCTTGCCTTTAGAGCCAATTACACAACAAAGA
AATAAGCATTTCCAATAGTTGTTCAGTAGAGTAGAAAATTATAAACGGGC
AGTATGCATTGAAAAAATGTATTATTCGTCTTCGGATGTGATGTAGCGCT
AACGAGTAAGAATTAGCcaaaaaaccataaaaaatTACAACTAGTTAGAA
CTGTTAATAAAATAAGAACacaagaaaatgattgacaatgGCTTCNTGAC
GAGTAAGAATTAGCGAAAACCATCAAAAATTATAACTAATGTGAGAATTG
TTAATAAAATAAGGATCTAACACAAGAAATTGCTTAACCAAAGGCTTGAA
TTCCTTTCCATTGGAACTTATCATAGTTTCTGACCTTTTATTGCTTCTAT
CCTTTGCTCAAGAAGGGATGCGTAATCTCCTCCGAATAAATTGATAAAAC
ATAATGTAAGAAAACTCCCATACCTCTGGAAATGGCATATGCAACAGAGC
AGTGATACCATGATAATTGTCAAACGATATCTGCATTCACGCAAACGATA
TCTTTAAAAAGGTATTGCAACAGAGCACGATACCAAAAACTGATATGAGC
AACGAGGCATTCATATCCACAAATATGCAACATATGTGCATCATAATCTC
AAAACACTGATATCTGCAACAGAGCACGATACCAAAAACTGATATGAGCA
ACGAGGCATTCATATCCACAAATATGCAACATATGTGCATCATAATCTCA
AAACACTGATATCTGCAACAGAGCACGATACCAAAAACTGATATGAGCAA
CGAGGCATTCATATCCACAAATATGCAACATATGTGCATCATAATCTCAA
AACACTGATATCTGCAACAGAGCACGATACCAAAAACTGATATGAGCAAC
GAGGCATTCATATCCACAAATATGCAACATATGTGCATCATAATCTCAAA
ACACTGATATCTGCAACAGAGCACGATACCAAAAACTGATATGAGCAACG
AGGCATTCATATCCACAAATATGCAACATATGTGCATCATAATCTCAAAA
CACTGATATCTGCAACAGAGCACGATAGCCAGAAATTGATAATAATGTCG
GTACCAGCAAATATAGCATCGATACCATGATTCGGTTGTTCTCAATTTTT
ACAcCTTGTTTCATGAACGTCATGGCAGATATATTTTCTCCAGCTTCAAG
CGGTTCTATGGCatcattcaaattttcaataacttcTAGTGTGTTCTTAA
ATTGATCCTCATGCTTTGAAAAGGTTGTCTGGtcgtaaaatcttttttct
tcgaGCCTCTGCTTCAGCTGTGCCAAAATCTCTTTTATAATGTTTTTCAA
GTCTTTGTTTTGTGCCATAACTTCTTTTCTCAACTACAACTTTTTGCAAG
AGCGaggattttgaaatgaaaacacGAGACATTTAAACACGCATTTCTGA
CGCATGCGCGCAGCTTGTCCCAATCTGCGCAAAGATCATCAAGCAGCTTT
GCGTGCGAAACCGTTGAGAAACTCGTTTCCCGTCTTTCTTCGATCGCCGA
GAAACACGCTTgctt
Run BLAST on NCBI

transcript from alignment at sc0000171:357272..360934-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013727 ID=TCONS_00013727|Name=TCONS_00013727|organism=Clytia hemisphaerica|type=transcript|length=3663bp|location=Sequence derived from alignment at sc0000171:357272..360934- (Clytia hemisphaerica)
NTCTCCTCAAAGCTTAAGAATAATACATAGAAAGTAGAAATAATAAAAAA
CATGAATTTGTTTGTTTATTGGATACATCTTGCAATGAAAAACACGAGGG
GAAAAAAAGAAAAGGTATGGATGCAAAAAATTCTTTGTTTATATTCCTAA
TCGGTTGGAAAATTTTGAACCTGTTAGAATGACTGTTCTTGATGATAATG
CAATTGGGTTGAGGTTTTTATATGATGTTTACATAATTAGTTATTCAAAA
CAATAAAGATGACGCGTTCTTTAGAAAACATGTAATAAGAGCTTTGTCTG
AATAGTTAACGACCAATCCAATGACGAGAATTCTTGCAAAATGTTCTTCT
CGACCCGATAAATGCTCTTCAAAAGACTCCCTTGCAGTCGTGTAGGATAT
ATATAATATGGTTGTCCGAAGTGGTGTAACGATCAACAATAACTCAGATG
TAATAGGCTCTTTTCGATTTTATTTAGCATCAGGGTTCCTAATTTTTGAT
TGCCTCTATCCTATGCTCGAGAAGGGATGCGTAATCTCCTCCGAATAAAA
TGATAAAACAAATAATGTAAGAAAACTCTCATACCTCTGTAAGTGGCATA
TGCAACAGAGCAGTGATACTAATTAATCGCCAATCGATATCTGCATCNAT
GTAAGAAAACTCCCATACCTCTGGAAATGGCATATGCAACAGAGCAGTGA
TACCATGATAATTGTCAAACGATATCTGCATTCACGCAAACGATATCTTT
AAAAAGGTATTGCAACAGGATACCAAAAACTGATATGAGCAACGAGGCAT
TCATATCCACAAATATGCAACATATGTGCATCATAATCTCAAAACACTGA
TATCTGCAACAGAGCACGATAACCACAAATTGATAATAATGTCGGTACCA
GCAAATATAGCATCGATACCATGATTCGGTTGTTCTCAATTTTTACACAT
GAAAATGAGAAAACAAATTACAAGATTGCATCATGAAAAACTTGGATCAA
AAAAAAGAACAAACATGCTCTTGCCTTTAGAGCCAATTACACAACAAAGA
AATAAGCATTTCCAATAGTTGTTCAGTAGAGTAGAAAATTATAAACGGGC
AGTATGCATTGAAAAAATGTATTATTCGTCTTCGGATGTGATGTAGCGCT
AACGAGTAAGAATTAGCCAAAAAACCATAAAAAATTACAACTAGTTAGAA
CTGTTAATAAAATAAGAACACAAGAAAATGATTGACAATGGCTTCNTGAC
GAGTAAGAATTAGCGAAAACCATCAAAAATTATAACTAATGTGAGAATTG
TTAATAAAATAAGGATCTAACACAAGAAATTGCTTAACCAAAGGCTTGAA
TTCCTTTCCATTGGAACTTATCATAGTTTCTGACCTTTTATTGCTTCTAT
CCTTTGCTCAAGAAGGGATGCGTAATCTCCTCCGAATAAATTGATAAAAC
ATAATGTAAGAAAACTCCCATACCTCTGGAAATGGCATATGCAACAGAGC
AGTGATACCATGATAATTGTCAAACGATATCTGCATTCACGCAAACGATA
TCTTTAAAAAGGTATTGCAACAGAGCACGATACCAAAAACTGATATGAGC
AACGAGGCATTCATATCCACAAATATGCAACATATGTGCATCATAATCTC
AAAACACTGATATCTGCAACAGAGCACGATACCAAAAACTGATATGAGCA
ACGAGGCATTCATATCCACAAATATGCAACATATGTGCATCATAATCTCA
AAACACTGATATCTGCAACAGAGCACGATACCAAAAACTGATATGAGCAA
CGAGGCATTCATATCCACAAATATGCAACATATGTGCATCATAATCTCAA
AACACTGATATCTGCAACAGAGCACGATACCAAAAACTGATATGAGCAAC
GAGGCATTCATATCCACAAATATGCAACATATGTGCATCATAATCTCAAA
ACACTGATATCTGCAACAGAGCACGATACCAAAAACTGATATGAGCAACG
AGGCATTCATATCCACAAATATGCAACATATGTGCATCATAATCTCAAAA
CACTGATATCTGCAACAGAGCACGATAGCCAGAAATTGATAATAATGTCG
GTACCAGCAAATATAGCATCGATACCATGATTCGGTTGTTCTCAATTTTT
ACACATGAAAATGAGAAAACAAATTACAAGATTACATCATAAAAAACCTG
GATCGAAAAAAGAACAAACTATGTTCTCGCCTCTAGTGTCAAGTACACAA
CAACAAAATAAGCATTTCCAATAATCGTTCAGCAGAGTAAAAAAAAAAAC
ATATAAACAGGGACAGAGAAGCATTGAAAAAATGTCTAAATGTCAACCAA
AAATAAGCAGATTGCCATAACGGTATAAAAAGAATACTTTTCTCTTGACA
GTTTTTCAGATGTTTGATGGTTTTCCCGACTAAAGAAATTGGAGGACATA
ACCAATTAAGTTTATCTTTTCCCTAATGGCAAGCGAATGTATTCATACCA
GTAGATGAGTTTGTTGACTTCGTATTTAAATTATTTGCAAATCGATCTAT
TAATCGACCCGAAATGTGAAATTATAGGAAAATCTTANTGAGTTTGTTGA
CTTCGTATTTAAATTATTTGCAAATCGATCTATTAATCGACCCGAGATAT
GAAATTATAGGAAAATCTTAATGTCGATGAACCAATTATCGGTATCTATA
GATTTTGAACTGATGTCAGCCGATTTGTTCTCTTCCCTTGGGATCCATGT
AAGAAAGAAAAAAATGTTATTCGCGATGTTATTGATAACTCAACCGTCGA
AAGCAATTAGAAAAAATATAAAAACACAATGTTTCCTTTATGTTTATTAT
GTTCAGTTAATCACTAATTTCTTCTGCTTTTTGATTTTGATGATACGAAT
TTGATGAGCTGTGTTTGCTAGAACTCGTTGTTGTTGATGAACTTTTTGAC
AATTCGGGACTTGTGGCTGTTCCTTTTGCACAAAATGTCGAATAATGTCC
AACTTTTTGCAATTGTAGCACGCAACATCATTAAAAACAAGATGACGAGT
TTATCTTTCTCTGTTCAATCTCTATGTTTTGTTTTATTCTTTCGGCAGAT
TTTCTGGCCTCTTTCAAATGTTTTTCTTTCATTTCCCCATTCGAAAGCAA
CAGATTTTGTCAACAGATTTTGTCCACAAAGTTTCACCACTGTCCATCCT
TCCCTGTCAGCAAGCCTTAGCATTTGAATCCTATCTTCTAAAAAGAACTT
ACCTTGTTTCATGAACGTCATGGCAGATATATTTTCTCCAGCTTCAAGCG
GTTCTATGGCATCATTCAAATTTTCAATAACTTCTAGTGTGTTCTTAAAT
TGATCCTCATGCTTTGAAAAGGTTGTCTGGTCGTAAAATCTTTTTTCTTC
GAGCCTCTGCTTCAGCTGTGCCAAAATCTCTTTTATAATGTTTTTCAAGT
CTTTGTTTTGTGCCATAACTTCTTTTCTCAACTACAACTTTTTGCAAGAG
CGAGGATTTTGAAATGAAAACACGAGACATTTAAACACGCATTTCTGACG
CATGCGCGCAGCTTGTCCCAATCTGCGCAAAGATCATCAAGCAGCTTTGC
GTGCGAAACCGTTGAGAAACTCGTTTCCCGTCTTTCTTCGATCGCCGAGA
AACACGCTTGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007661XLOC_007661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013727-exon-sc0000171-1575043694:358781..360934TCONS_00013727-exon-sc0000171-1575043694:358781..360934Clytia hemisphaericaexon
TCONS_00013727-exon-sc0000171-1575043694:357272..357682TCONS_00013727-exon-sc0000171-1575043694:357272..357682Clytia hemisphaericaexon
TCONS_00013727-exon-sc0000171-1510915933:358781..360934TCONS_00013727-exon-sc0000171-1510915933:358781..360934Clytia hemisphaericaexon
TCONS_00013727-exon-sc0000171-1510915933:357272..357682TCONS_00013727-exon-sc0000171-1510915933:357272..357682Clytia hemisphaericaexon
TCONS_00013727-exon-sc0000171-1491911889:358781..360934TCONS_00013727-exon-sc0000171-1491911889:358781..360934Clytia hemisphaericaexon
TCONS_00013727-exon-sc0000171-1491911889:357272..357682TCONS_00013727-exon-sc0000171-1491911889:357272..357682Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000171supercontigsc0000171:357272..360934 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.428308	0	0	0	0	0	0	0	0.560831	0	0	0.322778	0	0	0	0	0	0	0.000252665	6.61874e-10	0.259908	0.52738	0	0.0745695	0	0	0.113599	0	0	2.17893e-08
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top