TCONS_00013746 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013746
Unique NameTCONS_00013746
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013746 ID=TCONS_00013746|Name=TCONS_00013746|organism=Clytia hemisphaerica|type=transcript|length=686bp
ATTCGCTTGCATTAAGCGATCTCGTCCCATGTGGTACTTACGTGCTTACT
CTTACCTGATTTTCCAATGGCGTTTTTGCAGCCGCTTGGCTGCCCATGCT
AAAGCTATAAAGCTCTAGAGAAGTGGACTAAGTTAATTGCAATCAATCCT
ATTGAAGAATATTGTAATCAGACTAATCGAACATAATAAAATCTCAATTG
AAGGCAATTCAAACGCAATCGATTGGTTCTTAagatattcttactttttt
acaaacatgaaatgatcaatttgagagttttggacttttgaatgaacatt
tagaactaaaattacatttctgcctcaaagtttaaaCAAAGGAAGctgtt
tttttctgttaaccaaatacaaagtgactgtattcttatgaaattctgtg
aaactcaccctagagggtattcttagggtattcttacgaattggccaatt
ttcaccctgatattcttatagaagatattcttataaaaaagaaagcgtGT
ACACAACTTTCAATAATCCCTCAGCAATGAAAAATGGCCTTATTCTGTCA
CTAAGGTTATGAAATGTTTTTGGAGTCATTACCTGGAGTCATTACCATTG
ACTTCCACCCATAGAATAAAGTGACAAAGTCATAAAGCTTGTTGATCATA
ACTACCAGGTGCCAGGGTGGGGAAACTTCCCTTGCA
Run BLAST on NCBI

transcript from alignment at sc0000171:236531..237216

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013746 ID=TCONS_00013746|Name=TCONS_00013746|organism=Clytia hemisphaerica|type=transcript|length=686bp|location=Sequence derived from alignment at sc0000171:236531..237216 (Clytia hemisphaerica)
TGCAAGGGAAGTTTCCCCACCCTGGCACCTGGTAGTTATGATCAACAAGC
TTTATGACTTTGTCACTTTATTCTATGGGTGGAAGTCAATGGTAATGACT
CCAGGTAATGACTCCAAAAACATTTCATAACCTTAGTGACAGAATAAGGC
CATTTTTCATTGCTGAGGGATTATTGAAAGTTGTGTACacgctttctttt
ttataagaatatcttctataagaatatcagggtgaaaattggccaattcg
taagaataccctaagaataccctctagggtgagtttcacagaatttcata
agaatacagtcactttgtatttggttaacagaaaaaaacagCTTCCTTTG
tttaaactttgaggcagaaatgtaattttagttctaaatgttcattcaaa
agtccaaaactctcaaattgatcatttcatgtttgtaaaaaagtaagaat
atctTAAGAACCAATCGATTGCGTTTGAATTGCCTTCAATTGAGATTTTA
TTATGTTCGATTAGTCTGATTACAATATTCTTCAATAGGATTGATTGCAA
TTAACTTAGTCCACTTCTCTAGAGCTTTATAGCTTTAGCATGGGCAGCCA
AGCGGCTGCAAAAACGCCATTGGAAAATCAGGTAAGAGTAAGCACGTAAG
TACCACATGGGACGAGATCGCTTAATGCAAGCGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007676XLOC_007676Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013746-exon-sc0000171-1491911889:236531..237216TCONS_00013746-exon-sc0000171-1491911889:236531..237216Clytia hemisphaericaexon
TCONS_00013746-exon-sc0000171-1510915933:236531..237216TCONS_00013746-exon-sc0000171-1510915933:236531..237216Clytia hemisphaericaexon
TCONS_00013746-exon-sc0000171-1575043694:236531..237216TCONS_00013746-exon-sc0000171-1575043694:236531..237216Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000171supercontigsc0000171:236531..237216 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.160173	0.0807985	0.417151	0.498594	0.208293	0.163454	0.416814	0.100509	0.135353	0.15714	0	0.580526	0.312168	0	0.145207	0.536588	0.122152	0.177156	0.501469	0.0914828	0.166584	1.36099	0	0.0829378	0.329361	0.0760561	0.183403	0.634912	0.234679	0.610072
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013746 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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