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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013747 ID=TCONS_00013747|Name=TCONS_00013747|organism=Clytia hemisphaerica|type=transcript|length=1408bp
cttatataatttttttcacttttctcagTAACAAAATTACATTATTTACA
GTTTCaaagaatttaaatacaaaaccACTATAATCACCCTACAccaaaaa
tacttaaattatCTACGCTGGAAGAATGTTTCGTAACATATCTTTTTGAG
CTCCTgataaattttttggaaattgaatatcaaaTTGAATAATCATATCT
CCTTGTCTTGAGGGCATTTTCGGAAGAGGGAGACCTTCTCCTTGAATTGT
TCGTGTATCACCAGGTTGTAAAGTGTTTCTGATATTTAATGTTTTATGCT
GGCCATCAAGAGTTGGTATCGTAATATGACAATCTCCACACAAAGCGTCT
CGAAGAGATATGGGTACTTTGTAGACAAGATTGTTGTTTTTGTCTCGTTT
GAAATAGGGATGTTCTTTATCCTTTATGACTATGACAATATCGGCTGGGA
TATGTCCTGGCTTTTGATCTCCCTCgcctttgaaagtaatttttgttccT
TCTTTCCATCCTTTTTTGATTTCTAcaaccaaaattttttcatcactTCT
CATACTTCTGCCATCAGGATTCATAACTTGTCTTGTTATCTTTAGCTTTT
TTGTGCAGCCTCTCATTAGATCTTCATAGCTTACGAAAAGGTTTTTGAAG
ATTGGCTCGTCCTGCTTTTTCTGTCGTTTTGCTGAATGACCTCCTCCAAA
ATCTTCATAGTCCATAGGTTCTTCTTGTGAAAACATAAAGCTGTTTGGGC
TGTGTTGATGCCGTCCTCCACCCATTGAAGAAAAACCACCGGAGCCTCCT
CCAAGGTTGCCGAACATATCACCAAAACCAAAATCACTAccaaaagttct
tgaaaatgttttaaaagcgTCATTATttgagaatgaaaattttctgaaGC
CTCCATTACCTCCACCAAAATTGAAGGATGCAAAATTTGGACCAGAACCA
TGATACTGCCCTCCGGCATTCCCACTAGGGATTCCTCCTTTCAAACCTTC
TTCGCCATATTGATCATAGATTGCTCTCTTGTCTTTGTCACTGAGTACTT
CGTAAGCTTCAGAAATCTCTTTAAACTTCTCCTCAGCTCCTGGGGTTTTA
TTCTTGTCAGGATGATACTTCAATGCTAGTTTTCGATACGCTTTTTTCAA
TGCATCAGCATCCACAGTTTTTGAAACACCAAGAATGTTGTAATAATCTT
TCCCCATTTCAATTTCTTGTTTTAATTCAGTTAAAAGTCTTTGTCAAGAT
AAGCTTTTTGTCCCTTCAGCTAGTGTAACTTGAATAAAAACTGTTTAGTT
TAACAGCTTTCTCAAATTTATACAgtaatttcgaaattttctagAAACCG
AAGGAAATTTGTAGAAACACTTTCGCTTTCTACCAAATTCTAGAAATTTC
TGGAAAAT Run BLAST on NCBI protein sequence of TCONS_00013747-protein >TCONS_00013747-protein ID=TCONS_00013747-protein|Name=TCONS_00013747-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp
MGKDYYNILGVSKTVDADALKKAYRKLALKYHPDKNKTPGAEEKFKEISE
AYEVLSDKDKRAIYDQYGEEGLKGGIPSGNAGGQYHGSGPNFASFNFGGG
NGGFRKFSFSNNDAFKTFSRTFGSDFGFGDMFGNLGGGSGGFSSMGGGRH
QHSPNSFMFSQEEPMDYEDFGGGHSAKRQKKQDEPIFKNLFVSYEDLMRG
CTKKLKITRQVMNPDGRSMRSDEKILVVEIKKGWKEGTKITFKGEGDQKP
GHIPADIVIVIKDKEHPYFKRDKNNNLVYKVPISLRDALCGDCHITIPTL
DGQHKTLNIRNTLQPGDTRTIQGEGLPLPKMPSRQGDMIIQFDIQFPKNL
SGAQKDMLRNILPA Run BLAST on NCBI transcript from alignment at sc0000171:239219..240626 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013747 ID=TCONS_00013747|Name=TCONS_00013747|organism=Clytia hemisphaerica|type=transcript|length=1408bp|location=Sequence derived from alignment at sc0000171:239219..240626 (Clytia hemisphaerica)
ATTTTCCAGAAATTTCTAGAATTTGGTAGAAAGCGAAAGTGTTTCTACAA
ATTTCCTTCGGTTTctagaaaatttcgaaattacTGTATAAATTTGAGAA
AGCTGTTAAACTAAACAGTTTTTATTCAAGTTACACTAGCTGAAGGGACA
AAAAGCTTATCTTGACAAAGACTTTTAACTGAATTAAAACAAGAAATTGA
AATGGGGAAAGATTATTACAACATTCTTGGTGTTTCAAAAACTGTGGATG
CTGATGCATTGAAAAAAGCGTATCGAAAACTAGCATTGAAGTATCATCCT
GACAAGAATAAAACCCCAGGAGCTGAGGAGAAGTTTAAAGAGATTTCTGA
AGCTTACGAAGTACTCAGTGACAAAGACAAGAGAGCAATCTATGATCAAT
ATGGCGAAGAAGGTTTGAAAGGAGGAATCCCTAGTGGGAATGCCGGAGGG
CAGTATCATGGTTCTGGTCCAAATTTTGCATCCTTCAATTTTGGTGGAGG
TAATGGAGGCttcagaaaattttcattctcaaATAATGAcgcttttaaaa
cattttcaagaacttttggTAGTGATTTTGGTTTTGGTGATATGTTCGGC
AACCTTGGAGGAGGCTCCGGTGGTTTTTCTTCAATGGGTGGAGGACGGCA
TCAACACAGCCCAAACAGCTTTATGTTTTCACAAGAAGAACCTATGGACT
ATGAAGATTTTGGAGGAGGTCATTCAGCAAAACGACAGAAAAAGCAGGAC
GAGCCAATCTTCAAAAACCTTTTCGTAAGCTATGAAGATCTAATGAGAGG
CTGCACAAAAAAGCTAAAGATAACAAGACAAGTTATGAATCCTGATGGCA
GAAGTATGAGAagtgatgaaaaaattttggttgTAGAAATCAAAAAAGGA
TGGAAAGAAggaacaaaaattactttcaaaggcGAGGGAGATCAAAAGCC
AGGACATATCCCAGCCGATATTGTCATAGTCATAAAGGATAAAGAACATC
CCTATTTCAAACGAGACAAAAACAACAATCTTGTCTACAAAGTACCCATA
TCTCTTCGAGACGCTTTGTGTGGAGATTGTCATATTACGATACCAACTCT
TGATGGCCAGCATAAAACATTAAATATCAGAAACACTTTACAACCTGGTG
ATACACGAACAATTCAAGGAGAAGGTCTCCCTCTTCCGAAAATGCCCTCA
AGACAAGGAGATATGATTATTCAAtttgatattcaatttccaaaaaattt
atcAGGAGCTCAAAAAGATATGTTACGAAACATTCTTCCAGCGTAGataa
tttaagtatttttggTGTAGGGTGATTATAGTggttttgtatttaaattc
tttGAAACTGTAAATAATGTAATTTTGTTActgagaaaagtgaaaaaaat
tatataag Coding sequence (CDS) from alignment at sc0000171:239219..240626 >TCONS_00013747 ID=TCONS_00013747|Name=TCONS_00013747|organism=Clytia hemisphaerica|type=CDS|length=1095bp|location=Sequence derived from alignment at sc0000171:239219..240626 (Clytia hemisphaerica)
ATGGGGAAAGATTATTACAACATTCTTGGTGTTTCAAAAACTGTGGATGC
TGATGCATTGAAAAAAGCGTATCGAAAACTAGCATTGAAGTATCATCCTG
ACAAGAATAAAACCCCAGGAGCTGAGGAGAAGTTTAAAGAGATTTCTGAA
GCTTACGAAGTACTCAGTGACAAAGACAAGAGAGCAATCTATGATCAATA
TGGCGAAGAAGGTTTGAAAGGAGGAATCCCTAGTGGGAATGCCGGAGGGC
AGTATCATGGTTCTGGTCCAAATTTTGCATCCTTCAATTTTGGTGGAGGT
AATGGAGGCttcagaaaattttcattctcaaATAATGAcgcttttaaaac
attttcaagaacttttggTAGTGATTTTGGTTTTGGTGATATGTTCGGCA
ACCTTGGAGGAGGCTCCGGTGGTTTTTCTTCAATGGGTGGAGGACGGCAT
CAACACAGCCCAAACAGCTTTATGTTTTCACAAGAAGAACCTATGGACTA
TGAAGATTTTGGAGGAGGTCATTCAGCAAAACGACAGAAAAAGCAGGACG
AGCCAATCTTCAAAAACCTTTTCGTAAGCTATGAAGATCTAATGAGAGGC
TGCACAAAAAAGCTAAAGATAACAAGACAAGTTATGAATCCTGATGGCAG
AAGTATGAGAagtgatgaaaaaattttggttgTAGAAATCAAAAAAGGAT
GGAAAGAAggaacaaaaattactttcaaaggcGAGGGAGATCAAAAGCCA
GGACATATCCCAGCCGATATTGTCATAGTCATAAAGGATAAAGAACATCC
CTATTTCAAACGAGACAAAAACAACAATCTTGTCTACAAAGTACCCATAT
CTCTTCGAGACGCTTTGTGTGGAGATTGTCATATTACGATACCAACTCTT
GATGGCCAGCATAAAACATTAAATATCAGAAACACTTTACAACCTGGTGA
TACACGAACAATTCAAGGAGAAGGTCTCCCTCTTCCGAAAATGCCCTCAA
GACAAGGAGATATGATTATTCAAtttgatattcaatttccaaaaaattta
tcAGGAGCTCAAAAAGATATGTTACGAAACATTCTTCCAGCGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013747-exon-sc0000171-1491911889:239219..240626 | TCONS_00013747-exon-sc0000171-1491911889:239219..240626 | Clytia hemisphaerica | exon |
| TCONS_00013747-exon-sc0000171-1510915933:239219..240626 | TCONS_00013747-exon-sc0000171-1510915933:239219..240626 | Clytia hemisphaerica | exon |
| TCONS_00013747-exon-sc0000171-1575043694:239219..240626 | TCONS_00013747-exon-sc0000171-1575043694:239219..240626 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000171 | supercontig | sc0000171:239219..240626 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006457 | protein folding |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0051082 | unfolded protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006457 |
protein folding |
| molecular_function |
GO:0051082 |
unfolded protein binding |
Blast
BLAST of TCONS_00013747 vs. Swiss-Prot (Human)
Match: DNJB4 (DnaJ homolog subfamily B member 4 OS=Homo sapiens GN=DNAJB4 PE=1 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 3.138e-64 Identity = 100/184 (54.35%), Postives = 138/184 (75.00%), Query Frame = -1
Query: 116 KQDEPIFKNLFVSYEDLMRGCTKKLKITRQVMNPDGRSMRSDEKILVVEIKKGWKEGTKITFKGEGDQKPGHIPADIVIVIKDKEHPYFKRDKNNNLVYKVPISLRDALCGDCHITIPTLDGQHKTLNIRNTLQPGDTRTIQGEGLPLPKMPSRQGDMIIQFDIQFPKNLSGAQKDMLRNILPA 667
KQD P+ L VS E++ GCTK++KI+R+ +N DGRS RS++KIL +EIKKGWKEGTKITF EGD+ P IPADIV +IKDK+HP FKRD +N++Y ISLR+ALCG C I +PTLDG++ +++ + ++PG R I G GLP PK P ++GD++I+F++ FP +S + K++LR LPA
Sbjct: 155 KQDPPVIHELRVSLEEIYSGCTKRMKISRKRLNADGRSYRSEDKILTIEIKKGWKEGTKITFPREGDETPNSIPADIVFIIKDKDHPKFKRD-GSNIIYTAKISLREALCG-CSINVPTLDGRNIPMSVNDIVKPGMRRRIIGYGLPFPKNPDQRGDLLIEFEVSFPDTISSSSKEVLRKHLPA 336 HSP 2 Score: 88.5817 bits (218), Expect = 3.271e-19 Identity = 53/73 (72.60%), Postives = 61/73 (83.56%), Query Frame = -1
Query: 989 MGKDYYNILGVSKTVXXXXXXXXXXXXXXXYHPDKNKTPGAEEKFKEISEAYEVLSDKDKRAIYDQYGEEGLK 1207
MGKDYY ILG+ K + +KKAYRK ALK+HPDKNK+P AEEKFKE++EAYEVLSD KR IYDQ+GEEGLK
Sbjct: 1 MGKDYYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEEGLK 73
The following BLAST results are available for this feature:
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