TCONS_00013754 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013754
Unique NameTCONS_00013754
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013754 ID=TCONS_00013754|Name=TCONS_00013754|organism=Clytia hemisphaerica|type=transcript|length=436bp
TcgaacctcgtccccgtgtatcgcAGGCTTTCTTTACGTTACTGATGACC
gccagtaagcataaaaaagctgatactACAACAGGGAACAAAGTTAAGTA
TAATGAACAATTAACGAATTGCATAGTTAATCTTTTGTTTATACCTTGCA
CATGTGATTAACTCAATAAATCCTTTCTTAAAATGTTTGCTTCCAAATGC
ATAACAAAGAGGGTTCAAAAATGAATTTCCCCAACCAACGATATAACAAA
ACCGCCATAAACGCTCGGGCAGCCTTATGTTCTGACTTGAAACAATGACT
GTTGACAGGTAATAAGGCATCCAGGAGATTGAAAAAGCAACAATGATTAA
AAGCAAAAGTTGTAAGCCTTTTTTGGCATTCTTTTGTTGCCGATTTTTCT
CAACCCTTCTCACAGTGGATCGATTGTCACTTTTTN
Run BLAST on NCBI

protein sequence of TCONS_00013754-protein

>TCONS_00013754-protein ID=TCONS_00013754-protein|Name=TCONS_00013754-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
KSDNRSTVRRVEKNRQQKNAKKGLQLLLLIIVAFSISWMPYYLSTVIVSS
QNIRLPERLWRFCYIVGWGNSFLNPLCYAFGSKHFKKGFIELITCARYKQ
KINYAIR
Run BLAST on NCBI

transcript from alignment at sc0000171:430313..430748

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013754 ID=TCONS_00013754|Name=TCONS_00013754|organism=Clytia hemisphaerica|type=transcript|length=436bp|location=Sequence derived from alignment at sc0000171:430313..430748 (Clytia hemisphaerica)
NAAAAAGTGACAATCGATCCACTGTGAGAAGGGTTGAGAAAAATCGGCAA
CAAAAGAATGCCAAAAAAGGCTTACAACTTTTGCTTTTAATCATTGTTGC
TTTTTCAATCTCCTGGATGCCTTATTACCTGTCAACAGTCATTGTTTCAA
GTCAGAACATAAGGCTGCCCGAGCGTTTATGGCGGTTTTGTTATATCGTT
GGTTGGGGAAATTCATTTTTGAACCCTCTTTGTTATGCATTTGGAAGCAA
ACATTTTAAGAAAGGATTTATTGAGTTAATCACATGTGCAAGGTATAAAC
AAAAGATTAACTATGCAATTCGTTAATTGTTCATTATACTTAACTTTGTT
CCCTGTTGTagtatcagcttttttatgcttactggcGGTCATCAGTAACG
TAAAGAAAGCCTgcgatacacggggacgaggttcgA

Coding sequence (CDS) from alignment at sc0000171:430313..430748

>TCONS_00013754 ID=TCONS_00013754|Name=TCONS_00013754|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0000171:430313..430748 (Clytia hemisphaerica)
AAAAGTGACAATCGATCCACTGTGAGAAGGGTTGAGAAAAATCGGCAACA
AAAGAATGCCAAAAAAGGCTTACAACTTTTGCTTTTAATCATTGTTGCTT
TTTCAATCTCCTGGATGCCTTATTACCTGTCAACAGTCATTGTTTCAAGT
CAGAACATAAGGCTGCCCGAGCGTTTATGGCGGTTTTGTTATATCGTTGG
TTGGGGAAATTCATTTTTGAACCCTCTTTGTTATGCATTTGGAAGCAAAC
ATTTTAAGAAAGGATTTATTGAGTTAATCACATGTGCAAGGTATAAACAA
AAGATTAACTATGCAATTCGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007684XLOC_007684Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013754-proteinTCONS_00013754-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013754-exon-sc0000171-1491911889:430313..430748TCONS_00013754-exon-sc0000171-1491911889:430313..430748Clytia hemisphaericaexon
TCONS_00013754-exon-sc0000171-1510915933:430313..430748TCONS_00013754-exon-sc0000171-1510915933:430313..430748Clytia hemisphaericaexon
TCONS_00013754-exon-sc0000171-1575043694:430313..430748TCONS_00013754-exon-sc0000171-1575043694:430313..430748Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000171supercontigsc0000171:430313..430748 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.400075	1.45652	0.863747	1.40936	0.153009	0.659573	0	0	0	1.61269	0	1.00465	1.64061	0.378267	0.779882	1.55052	1.38613	0.457578	1.79266	1.72776	0.281307	0.874501	2.23493	1.49207	0	0	1.00766	0.626492	1.44671	1.4032
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013754 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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