TCONS_00013807 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013807
Unique NameTCONS_00013807
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013807 ID=TCONS_00013807|Name=TCONS_00013807|organism=Clytia hemisphaerica|type=transcript|length=731bp
TATAGAATAAAGATACAAGTAGATAAAAGAAAAGCTATGTTGGCTCAGTA
TTCTACAAAAAATGCATCCGAGATTTTAAAACGAATTTCAACAACTGTTA
TTAGCCATACTTATGAAAATGTAAGGGAAGAGCTCGGTACAACGGAACGG
CCGCTTACGGAAAAAGAACTTTCCAAAAGGCGGAAATTCGCGACGGCTAT
TATCGTTTGTTTCTCTTTAGCTTTTGttggtatttttgtttttgtgattt
ATAATCATTTCAAAGTGAAATGGAACGAATTTTCCAAACAAGAAAGAGAA
GAAGGAGaatattttgttgaaattgcAGACCCGAATGGCAAAGACTATCA
ACACAGGAATGGAAAACATGGCAGTGTAAACGCTTGATAGACAAAAAGGG
AGGATTGTTTTACATACGCTTGTTTTGTGGGCAGATTTTTAAGATTATCA
AAGAGCTCAGATTAAACTAGCATATCTGTTGCAAAGATTTTTTCAGACTT
TTAGACATCTGTGATGAACTGGTTTACAGATTGTTATCCCTTTTGCATTA
ATATCTTAGCGGAGCAATATGCTGCATGTTATTCGTGATCAAATATTTGG
GCACTTTTACAAGAACAATGAACCAAGTTCACGGAAAAACAGGCTATCTC
CGTAAAAGACAAACCAACGGAAATTATTTGCTTTGTATTTAATGTCAATG
AGCACGGTTTGGTAAATATAGCAAAAAGAAC
Run BLAST on NCBI

protein sequence of TCONS_00013807-protein

>TCONS_00013807-protein ID=TCONS_00013807-protein|Name=TCONS_00013807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
YRIKIQVDKRKAMLAQYSTKNASEILKRISTTVISHTYENVREELGTTER
PLTEKELSKRRKFATAIIVCFSLAFVGIFVFVIYNHFKVKWNEFSKQERE
EGEYFVEIADPNGKDYQHRNGKHGSVNA
Run BLAST on NCBI

transcript from alignment at sc0000173:173837..174567

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013807 ID=TCONS_00013807|Name=TCONS_00013807|organism=Clytia hemisphaerica|type=transcript|length=731bp|location=Sequence derived from alignment at sc0000173:173837..174567 (Clytia hemisphaerica)
GTTCTTTTTGCTATATTTACCAAACCGTGCTCATTGACATTAAATACAAA
GCAAATAATTTCCGTTGGTTTGTCTTTTACGGAGATAGCCTGTTTTTCCG
TGAACTTGGTTCATTGTTCTTGTAAAAGTGCCCAAATATTTGATCACGAA
TAACATGCAGCATATTGCTCCGCTAAGATATTAATGCAAAAGGGATAACA
ATCTGTAAACCAGTTCATCACAGATGTCTAAAAGTCTGAAAAAATCTTTG
CAACAGATATGCTAGTTTAATCTGAGCTCTTTGATAATCTTAAAAATCTG
CCCACAAAACAAGCGTATGTAAAACAATCCTCCCTTTTTGTCTATCAAGC
GTTTACACTGCCATGTTTTCCATTCCTGTGTTGATAGTCTTTGCCATTCG
GGTCTgcaatttcaacaaaatattCTCCTTCTTCTCTTTCTTGTTTGGAA
AATTCGTTCCATTTCACTTTGAAATGATTATaaatcacaaaaacaaaaat
accaaCAAAAGCTAAAGAGAAACAAACGATAATAGCCGTCGCGAATTTCC
GCCTTTTGGAAAGTTCTTTTTCCGTAAGCGGCCGTTCCGTTGTACCGAGC
TCTTCCCTTACATTTTCATAAGTATGGCTAATAACAGTTGTTGAAATTCG
TTTTAAAATCTCGGATGCATTTTTTGTAGAATACTGAGCCAACATAGCTT
TTCTTTTATCTACTTGTATCTTTATTCTATA

Coding sequence (CDS) from alignment at sc0000173:173837..174567

>TCONS_00013807 ID=TCONS_00013807|Name=TCONS_00013807|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0000173:173837..174567 (Clytia hemisphaerica)
TCAAGCGTTTACACTGCCATGTTTTCCATTCCTGTGTTGATAGTCTTTGC
CATTCGGGTCTgcaatttcaacaaaatattCTCCTTCTTCTCTTTCTTGT
TTGGAAAATTCGTTCCATTTCACTTTGAAATGATTATaaatcacaaaaac
aaaaataccaaCAAAAGCTAAAGAGAAACAAACGATAATAGCCGTCGCGA
ATTTCCGCCTTTTGGAAAGTTCTTTTTCCGTAAGCGGCCGTTCCGTTGTA
CCGAGCTCTTCCCTTACATTTTCATAAGTATGGCTAATAACAGTTGTTGA
AATTCGTTTTAAAATCTCGGATGCATTTTTTGTAGAATACTGAGCCAACA
TAGCTTTTCTTTTATCTACTTGTATCTTTATTCTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007711XLOC_007711Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013807-exon-sc0000173-1491911889:173837..174567TCONS_00013807-exon-sc0000173-1491911889:173837..174567Clytia hemisphaericaexon
TCONS_00013807-exon-sc0000173-1510915933:173837..174567TCONS_00013807-exon-sc0000173-1510915933:173837..174567Clytia hemisphaericaexon
TCONS_00013807-exon-sc0000173-1575043694:173837..174567TCONS_00013807-exon-sc0000173-1575043694:173837..174567Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013807-proteinTCONS_00013807-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000173supercontigsc0000173:173837..174567 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.74144	1.37611	0.699038	0.572627	0.343637	0.0709416	0.0688577	0.135793	3.2997	3.99008	3.47335	4.22443	13.0104	4.60196	4.55164	3.70453	9.0026	8.6541	3.50673	4.95931	6.12957	3.25625	0.186387	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013807 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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