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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013809 ID=TCONS_00013809|Name=TCONS_00013809|organism=Clytia hemisphaerica|type=transcript|length=1498bp
ttcaaaatcaacgcaCTTAATAACACCCGACACTAAATTTTTAACATTAA
ACCAATATTTATTCTTGCCATTAGCTTTTCCAGCACGATTAACAGCGATA
AATTTTTCTTCCTTATTGGTATCTGGGTCAATGAACAAAATTTGTTGTCC
AATAAGAGGAAGCTGAATTTGTTGAGAgttacttttatttctacaatcag
tctttttcttatctCCCACCGGATGCGTTGTTTCAGCTGTTTGGATCTCT
GGTATCTTTTTGTCAGGTTTAGTAAGCTTAGGTTCTGCGATCGGGTTTTC
AACTGGAATCATAACTGTTTCATTACTAACAATATCGATGTCTAATAGCT
CTGGAATGGGTACTTGTGGTTGTTCATCTTCATCTGGTACGATAAGTATC
TCCTTTGGTAATGATTGTTAATCATTCATTGTTTCGTTACAAACATAATA
ATAATTGATAACAAATAATAACAGCTGTGGAGGAGCTTTAATTTATGTGA
ATGAATGAACTGTACATTTACCTGTTGTGTTAATTCGTGTTAAGACTTAC
TGACAATAACTGATGATACTGATCGTGACGAGAACTAACAATTGGTGAAG
ACCACCGCACCCTGAAGAAAGGtaatcttcttcatttttacaatGATCCC
GACTTTTCCTTATTTGCTTTGGTCAAATGGCATGGACTTACTCGTAGAAC
ACTTCCTCCGTGACGCACAACAACAACTTTTACGTCAATTCCGATAATGG
TACCTGCACCATGCCGGTCCTTGTCTATATTTCGTTTGTAATAGACTGTA
TCTCCATTATTAAACTCTTTGCTCGTTGTTGTTCGTGTTTGACGTGATAA
CGCTGTTTTGATTCTTTTACTGGATTCAGCTTGGATAAATGCTCTTCTAG
CAGAGTGAAGAGCATGCAACAAGTTCACTTGACGTTTTCGTTCGAAGGGC
TGGTAACTGAGATGTTAACGTGGACGGAAGATTTGGGTTACGGCCAAAGA
CTAGTTGATTAGGACTGTATCCCAAGTTGTTAGACAAAGCATTTTTCACA
CTTACAGCCCAAACAAGTGCATTCTGTATGGAGCACTGAGTATCAGCAAC
AATTTTGTGGATCATGTTTCCTAGAGTGGCATTATGTCTCTCGACTACCC
CATTTGACCATGGTGATTCAGCAGCTGTTGAAGCTATCGATACATCTAAA
AGTTCTGCTACGTCACAAAGCAGTTCATTGTTAAACTCTCCTCAGCAAAG
ATTGATTGTGGTGAACCGAAAATAGCAACCCAGTGTTTCAAGATTTCGTC
AACTATCACCTCCTTGTGTTTAGATTTGACGACGGACGCCGCAGAGTAGC
GAGTAAATAAATCGATCATATGAAAAACAATGCACTTTTTATCGTTAATG
GTGATGAACTTtaaatccattgcaaggcaaCCATTAAATTCTTTGGAAAG
CGATAACGATACGACAGGTCTGGCTCTGGCTTTTTGGTAACGGTTACA Run BLAST on NCBI protein sequence of TCONS_00013809-protein >TCONS_00013809-protein ID=TCONS_00013809-protein|Name=TCONS_00013809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MIPVENPIAEPKLTKPDKKIPEIQTAETTHPVGDKKKTDCRNKSNSQQIQ
LPLIGQQILFIDPDTNKEEKFIAVNRAGKANGKNKYWFNVKNLVSGVIKC
VDFE Run BLAST on NCBI transcript from alignment at sc0000173:192772..194269 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013809 ID=TCONS_00013809|Name=TCONS_00013809|organism=Clytia hemisphaerica|type=transcript|length=1498bp|location=Sequence derived from alignment at sc0000173:192772..194269 (Clytia hemisphaerica)
TGTAACCGTTACCAAAAAGCCAGAGCCAGACCTGTCGTATCGTTATCGCT
TTCCAAAGAATTTAATGGttgccttgcaatggatttaAAGTTCATCACCA
TTAACGATAAAAAGTGCATTGTTTTTCATATGATCGATTTATTTACTCGC
TACTCTGCGGCGTCCGTCGTCAAATCTAAACACAAGGAGGTGATAGTTGA
CGAAATCTTGAAACACTGGGTTGCTATTTTCGGTTCACCACAATCAATCT
TTGCTGAGGAGAGTTTAACAATGAACTGCTTTGTGACGTAGCAGAACTTT
TAGATGTATCGATAGCTTCAACAGCTGCTGAATCACCATGGTCAAATGGG
GTAGTCGAGAGACATAATGCCACTCTAGGAAACATGATCCACAAAATTGT
TGCTGATACTCAGTGCTCCATACAGAATGCACTTGTTTGGGCTGTAAGTG
TGAAAAATGCTTTGTCTAACAACTTGGGATACAGTCCTAATCAACTAGTC
TTTGGCCGTAACCCAAATCTTCCGTCCACGTTAACATCTCAGTTACCAGC
CCTTCGAACGAAAACGTCAAGTGAACTTGTTGCATGCTCTTCACTCTGCT
AGAAGAGCATTTATCCAAGCTGAATCCAGTAAAAGAATCAAAACAGCGTT
ATCACGTCAAACACGAACAACAACGAGCAAAGAGTTTAATAATGGAGATA
CAGTCTATTACAAACGAAATATAGACAAGGACCGGCATGGTGCAGGTACC
ATTATCGGAATTGACGTAAAAGTTGTTGTTGTGCGTCACGGAGGAAGTGT
TCTACGAGTAAGTCCATGCCATTTGACCAAAGCAAATAAGGAAAAGTCGG
GATCattgtaaaaatgaagaagattaCCTTTCTTCAGGGTGCGGTGGTCT
TCACCAATTGTTAGTTCTCGTCACGATCAGTATCATCAGTTATTGTCAGT
AAGTCTTAACACGAATTAACACAACAGGTAAATGTACAGTTCATTCATTC
ACATAAATTAAAGCTCCTCCACAGCTGTTATTATTTGTTATCAATTATTA
TTATGTTTGTAACGAAACAATGAATGATTAACAATCATTACCAAAGGAGA
TACTTATCGTACCAGATGAAGATGAACAACCACAAGTACCCATTCCAGAG
CTATTAGACATCGATATTGTTAGTAATGAAACAGTTATGATTCCAGTTGA
AAACCCGATCGCAGAACCTAAGCTTACTAAACCTGACAAAAAGATACCAG
AGATCCAAACAGCTGAAACAACGCATCCGGTGGGagataagaaaaagact
gattgtagaaataaaagtaacTCTCAACAAATTCAGCTTCCTCTTATTGG
ACAACAAATTTTGTTCATTGACCCAGATACCAATAAGGAAGAAAAATTTA
TCGCTGTTAATCGTGCTGGAAAAGCTAATGGCAAGAATAAATATTGGTTT
AATGTTAAAAATTTAGTGTCGGGTGTTATTAAGtgcgttgattttgaa Coding sequence (CDS) from alignment at sc0000173:192772..194269 >TCONS_00013809 ID=TCONS_00013809|Name=TCONS_00013809|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000173:192772..194269 (Clytia hemisphaerica)
ATGATTCCAGTTGAAAACCCGATCGCAGAACCTAAGCTTACTAAACCTGA
CAAAAAGATACCAGAGATCCAAACAGCTGAAACAACGCATCCGGTGGGag
ataagaaaaagactgattgtagaaataaaagtaacTCTCAACAAATTCAG
CTTCCTCTTATTGGACAACAAATTTTGTTCATTGACCCAGATACCAATAA
GGAAGAAAAATTTATCGCTGTTAATCGTGCTGGAAAAGCTAATGGCAAGA
ATAAATATTGGTTTAATGTTAAAAATTTAGTGTCGGGTGTTATTAAGtgc
gttgattttgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013809-exon-sc0000173-1491911889:192772..194269 | TCONS_00013809-exon-sc0000173-1491911889:192772..194269 | Clytia hemisphaerica | exon |
| TCONS_00013809-exon-sc0000173-1510915933:192772..194269 | TCONS_00013809-exon-sc0000173-1510915933:192772..194269 | Clytia hemisphaerica | exon |
| TCONS_00013809-exon-sc0000173-1575043694:192772..194269 | TCONS_00013809-exon-sc0000173-1575043694:192772..194269 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000173 | supercontig | sc0000173:192772..194269 . |
Blast
The following BLAST results are available for this feature:
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