TCONS_00013816 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013816
Unique NameTCONS_00013816
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length643

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013816 ID=TCONS_00013816|Name=TCONS_00013816|organism=Clytia hemisphaerica|type=transcript|length=643bp
GGCTGGAATAACTGGATTATTATTAGATTTACATACTTTCAAccataaaa
tttttcttgaaaatccgTCTATGCATCCATGAATAGGTAGGCCATATGGC
TTTAATTTATCATAGCCATCGATGTGCCAGGCCCAGTTAGGGCCCTGGGA
ACGGTATACCCTCCTTATTAATcttctttttctcctttcttctgTCCCAT
CAGGATCAACATCCTTTAATATCCGCATTACGGTATCTCGTGGAACGGTT
AGACTATAACTTGTTCGAAGTTTGTTCCACATACCACGATAACCCAGTTG
TGAGGAAGGGCCTTCAATTTCTCTCTCAATAATTGTTCTTATCTGTCCCT
CGTTAACATTAACATCCTTCTTTTTGAGACCGTATTCACCGAGTCTTCTT
TTTAGTGTTCTCAAGCTCATTTGAATTCCATGATTAACATTGAGGAAGAG
GAGGATTGATTCGTAAACAAAGCCTCGATGGAAGTAGTATTCTATGATCT
CCTTTTCTCCACTTAATTGTTCGATTCGTGTTGGAGCTTTCCTTTCACCA
CAAATGCCACAAAATACATCAGCCTCGAGCAATGCTTGTCCACACTGCCC
ACAAAACATGGCactaaattaaaagaaaaaataccaTCTAGTA
Run BLAST on NCBI

protein sequence of TCONS_00013816-protein

>TCONS_00013816-protein ID=TCONS_00013816-protein|Name=TCONS_00013816-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MFCGQCGQALLEADVFCGICGERKAPTRIEQLSGEKEIIEYYFHRGFVYE
SILLFLNVNHGIQMSLRTLKRRLGEYGLKKKDVNVNEGQIRTIIEREIEG
PSSQLGYRGMWNKLRTSYSLTVPRDTVMRILKDVDPDGTEERRKRRLIRR
VYRSQGPNWAWHIDGYDKLKPYGLPIHGCIDGFSRKILWLKVCKSNNNPV
IPA
Run BLAST on NCBI

transcript from alignment at sc0000173:423229..423871

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013816 ID=TCONS_00013816|Name=TCONS_00013816|organism=Clytia hemisphaerica|type=transcript|length=643bp|location=Sequence derived from alignment at sc0000173:423229..423871 (Clytia hemisphaerica)
TACTAGAtggtattttttcttttaatttagtGCCATGTTTTGTGGGCAGT
GTGGACAAGCATTGCTCGAGGCTGATGTATTTTGTGGCATTTGTGGTGAA
AGGAAAGCTCCAACACGAATCGAACAATTAAGTGGAGAAAAGGAGATCAT
AGAATACTACTTCCATCGAGGCTTTGTTTACGAATCAATCCTCCTCTTCC
TCAATGTTAATCATGGAATTCAAATGAGCTTGAGAACACTAAAAAGAAGA
CTCGGTGAATACGGTCTCAAAAAGAAGGATGTTAATGTTAACGAGGGACA
GATAAGAACAATTATTGAGAGAGAAATTGAAGGCCCTTCCTCACAACTGG
GTTATCGTGGTATGTGGAACAAACTTCGAACAAGTTATAGTCTAACCGTT
CCACGAGATACCGTAATGCGGATATTAAAGGATGTTGATCCTGATGGGAc
agaagaaaggagaaaaagaagATTAATAAGGAGGGTATACCGTTCCCAGG
GCCCTAACTGGGCCTGGCACATCGATGGCTATGATAAATTAAAGCCATAT
GGCCTACCTATTCATGGATGCATAGAcggattttcaagaaaaattttatg
gTTGAAAGTATGTAAATCTAATAATAATCCAGTTATTCCAGCC

Coding sequence (CDS) from alignment at sc0000173:423229..423871

>TCONS_00013816 ID=TCONS_00013816|Name=TCONS_00013816|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at sc0000173:423229..423871 (Clytia hemisphaerica)
ATGTTTTGTGGGCAGTGTGGACAAGCATTGCTCGAGGCTGATGTATTTTG
TGGCATTTGTGGTGAAAGGAAAGCTCCAACACGAATCGAACAATTAAGTG
GAGAAAAGGAGATCATAGAATACTACTTCCATCGAGGCTTTGTTTACGAA
TCAATCCTCCTCTTCCTCAATGTTAATCATGGAATTCAAATGAGCTTGAG
AACACTAAAAAGAAGACTCGGTGAATACGGTCTCAAAAAGAAGGATGTTA
ATGTTAACGAGGGACAGATAAGAACAATTATTGAGAGAGAAATTGAAGGC
CCTTCCTCACAACTGGGTTATCGTGGTATGTGGAACAAACTTCGAACAAG
TTATAGTCTAACCGTTCCACGAGATACCGTAATGCGGATATTAAAGGATG
TTGATCCTGATGGGAcagaagaaaggagaaaaagaagATTAATAAGGAGG
GTATACCGTTCCCAGGGCCCTAACTGGGCCTGGCACATCGATGGCTATGA
TAAATTAAAGCCATATGGCCTACCTATTCATGGATGCATAGAcggatttt
caagaaaaattttatggTTGAAAGTATGTAAATCTAATAATAATCCAGTT
ATTCCAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007720XLOC_007720Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013816-exon-sc0000173-1491911889:423229..423871TCONS_00013816-exon-sc0000173-1491911889:423229..423871Clytia hemisphaericaexon
TCONS_00013816-exon-sc0000173-1510915933:423229..423871TCONS_00013816-exon-sc0000173-1510915933:423229..423871Clytia hemisphaericaexon
TCONS_00013816-exon-sc0000173-1575043694:423229..423871TCONS_00013816-exon-sc0000173-1575043694:423229..423871Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013816-proteinTCONS_00013816-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000173supercontigsc0000173:423229..423871 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.163492	0.0797152	0	0	0.440956	0.435562	2.10195	2.26299	0.0688857	0.0853261	0	0.0544423	0	0.169381	0.0464181	0	0	0	0.608284	0.0909322	0	0.115654	0	0	0	0.07833	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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