TCONS_00013818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013818
Unique NameTCONS_00013818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length353

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013818 ID=TCONS_00013818|Name=TCONS_00013818|organism=Clytia hemisphaerica|type=transcript|length=353bp
AGAAAAGGGTGATATACAcaaaattttgcctaaaaactaGTTACTAAACT
AGTCACTACCCTGGTGTAGTAACTGGTAGGGTGGTGGTGtccaaattttt
ttgtcaaaataccAGTGGTATCAATACACATGGTATCGTGTAGTAACTGG
TTGACCCCCCCTGTTTCTGTAAAAAGGTTTATTagaattttggattttgg
ttCACCGAAAAGTACaccaaaacttaaaatttctaTGGGACATGTCTCTA
GAACGGTTTGAACCCCACAGGGAAGGATCAGCATTGGTGAACTTTTCTTG
TCCGTTCTCAGAAAGTTTCCTGTCCTTGTTTCCCTTACCAACCATTCCAT
CAT
Run BLAST on NCBI

transcript from alignment at sc0000173:429528..429880

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013818 ID=TCONS_00013818|Name=TCONS_00013818|organism=Clytia hemisphaerica|type=transcript|length=353bp|location=Sequence derived from alignment at sc0000173:429528..429880 (Clytia hemisphaerica)
ATGATGGAATGGTTGGTAAGGGAAACAAGGACAGGAAACTTTCTGAGAAC
GGACAAGAAAAGTTCACCAATGCTGATCCTTCCCTGTGGGGTTCAAACCG
TTCTAGAGACATGTCCCAtagaaattttaagttttggtGTACTTTTCGGT
GaaccaaaatccaaaattctAATAAACCTTTTTACAGAAACAGGGGGGGT
CAACCAGTTACTACACGATACCATGTGTATTGATACCACTggtattttga
caaaaaaatttggaCACCACCACCCTACCAGTTACTACACCAGGGTAGTG
ACTAGTTTAGTAACtagtttttaggcaaaattttgTGTATATCACCCTTT
TCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007722XLOC_007722Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013818-exon-sc0000173-1491911889:429528..429880TCONS_00013818-exon-sc0000173-1491911889:429528..429880Clytia hemisphaericaexon
TCONS_00013818-exon-sc0000173-1510915933:429528..429880TCONS_00013818-exon-sc0000173-1510915933:429528..429880Clytia hemisphaericaexon
TCONS_00013818-exon-sc0000173-1575043694:429528..429880TCONS_00013818-exon-sc0000173-1575043694:429528..429880Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000173supercontigsc0000173:429528..429880 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.246373	1.44151	1.39478	0.54583	0.664496	1.05019	2.21726	1.48269	0.830455	1.02865	1.74726	1.969	0.98313	2.38231	1.39899	1.65146	1.84951	3.60181	0.2619	2.46653	1.42924	1.0457	0.564973	0.513642	0.52904	1.18039	0.675653	0.360537	0.820364	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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