TCONS_00013825 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013825
Unique NameTCONS_00013825
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1192

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013825 ID=TCONS_00013825|Name=TCONS_00013825|organism=Clytia hemisphaerica|type=transcript|length=1192bp
ATGCCCGGCTTCGGATTAGCCCGGAGTACGGCTCGGGATACTCTATTTTT
CAACTCCACCGTAGATGCCAAATAAATCAAAAGTGAAAGTTGTTTTGGAG
CTCATTATGGAAAAAAGAAGTCAGATCTGGTCAGATGACCTGATCCTGAT
GACAGTGAGGACAGGCTGGAAAGTTTTGACTATTTAATCACCAGTTTATC
TTATGGCATGATGTTAAACATGAATCATCAAAGatatcttcttcttctta
tCACTAATCTTTATATTGCTCATGGAAGAATCCTCGAAAATGGCTACCAA
GAATTCACTATCACTTTGCCAAAAGTCATCAGAAGAAAAGAATGGCGGTG
GTGATGGGGAAGTGAAATCATTGGCCATGGAGATGAAGTCGTTCAACTTA
ACAAAATGGATGTATGAAGATTCTCTTATCACATACACCATGCATTGCAG
TCCAGCAGGAGAGAAGAAACATTTTTCTGTCAAGATTTACCTTTTTCATC
ACTTCTGTCCTCTTCCCAGAATTATGTATTCATTGCTGGACAAAGACTAC
AACAATATCCCATGTCACGACCATGCTTTATCTACCCTGGGTaaaaaaat
cagaagaGATATAGAACATGCTATTCGAAGGCAAAGAGCTGAAGACAACA
CCGAACCGTACCCGAGAAACGAATTGCGTGCAGATATGAATGGTCTATTT
GTCGTCGGCCTTATGTTCAAATCTACAGATGAAGTGACAATTAAAGCGCG
AATTGATTCGGTGCACAAGGGATCATACCTGTCAGCAATGATTTACAAAC
TTCTCTCGttttatGGTGTAATGTCGTTGATTTATTTGGCTTATGCTATT
AGTTGGTTTATTGACACTTGTTGTAAATATTGGAAAGACTTGTTACGCGT
ACAATTTTGGATTGGTGGAGTTATCGCACTTGGGATGTTTGAAAACGCAC
TATTTTATTCTGCATACCAAAGTATCAGTCACTATGGCAAAGGTTTGTCT
TTTTCAAttaagttattttttccgaggtctgaatcgctgcttCGAAAACG
CTGAGCTTGCATAAAGATTGCAGTTATTCAACCAATCCTTAATACAAAAG
GTAGCGCGTGAGGTAACTTAATTGTTCGATCcaacactgcaatgtcttca
cttcaatataacattttaatgaccagagaGTTAACAATGTTT
Run BLAST on NCBI

transcript from alignment at sc0000174:87796..108001+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013825 ID=TCONS_00013825|Name=TCONS_00013825|organism=Clytia hemisphaerica|type=transcript|length=20206bp|location=Sequence derived from alignment at sc0000174:87796..108001+ (Clytia hemisphaerica)
ATGCCCGGCTTCGGATTAGCCCGGAGTACGGCTCGGGATACTCTATTTTT
CAACTCCACCGTAGATGCCAAATAAATCAAAAGTGAAAGTTGTTTTGGAG
CTCATTATGGAAAAAAGAAGTCAGATCTGGTCAGATGACCTGATCCTGAT
GACAGTGAGGACAGGCTGGAAAGTTTTGACTATTTAATCACCAGTTTATC
TTATGGCATGATGTTAAACATGAATCATCAAAGatatcttcttcttctta
tCACTAATCTTTATATTGCTCATGGAAGAATCCTCGAAAATGGCTACCAA
GAATTCACTATCACTTTGCCAAAAGTCATCAGAAGAAAAGAATGGCGGTG
GTGATGGGGAAGTGAAATCATTGGCCATGGAGATGAAGGTATTtaatttt
gcctttttttcatttattttgggATAGCTTTGAGATTCCACAGGCTTTTT
AAAGCCTTactaaggcggcaatcacaaatatcttcgtttcgcgtcgtCGC
CCCCCGACCGACTTTGAAAATTGAGtaaattgagtcggtgagttggtaaa
tttgtcggaatttttctgtcaatgacctttccttcgttcaaaaattttat
tattgccaattttttgcgagcgatttctagcgcatttgcAGCATTTTGAC
TTGTGCTcctgtttatcattacatgtgcCATACGACCCACGGtgcacggc
atggcccgaacatgttcgggcctgcccggaccatgctcgggccacaaaaa
agtattattaacattttgttcggaccatgttcgggcctgttcggaccatg
ctcgggccacaaaaaagtattattaacattttgttcggaccatgttcggg
ccatgtattatttacaattgatacggatttgctcgggccatgttcgggcc
atatATAACCACAACTTCAATCCCTCGATTTCACTTCCCTATCCGCCAGA
TTTACCGCAGGTTTAGTGAAGTAGTTTTTAACATTAAAATGAATAAAGTG
CGactgttaaatcttttttatgaaaacatAAGCTATACGAACAACAGGCT
TTGGTAACCAAAGTGTCAAAAAAGCAGGTTATGGACGTCCCCGTAAAGTT
CTACTCTAAAACCCTCAAACAATTTGTGTTTCTaaagaattttttgtaaa
tataatAAGTACTATTATAAAGGCTCCCCGCCCCAGCGGTAAGTCTGATC
ACAACATCGCgcaaattgttttctttaatcgCGATTACACAAATCAACAA
CAAAATGGATAATCACgtatccctttgaaaaagttttaaaatcacGCCTC
ACAGCTCAAAAACCTTTCAAACCACGACCTTTGATCACGCAATCACAAAA
ACCGCTTAAAGGGCCTCATTAGAATTTAAGGAAATTTCCGTTATCAATTG
AAAGTTTTAAGCAAATGTGAACGCAATTTCCCCGCAATCATTATTATACC
AATTATCTATTCTCTGTCtagggaacgggataaagaataaaaagaagacc
atattatgtaagattcaaatcattttttttaataattttcctaacttaat
tggaaaatagatgattaacttttatatttgaacaatatatatttgaataa
agatgaagatttttaaatttgtttgctaaaataaggaatttaaaatataa
atattgggccttgaaattacacgcgcgatcgtagtaagttttcgaaaatc
tggcccgaacatggtccgaaactgcgcggACCACGCGtgggccattttta
aaaagcattaatcaagaggcccgaacatgttcaggccatgccgtgggtcg
ttgtgccattttggggtcggaggtcacagtgttcttcaaaggtcataatt
ttaaaccacccattacacgcGATTGTTTTGGcagctggctggctggcagt
tttcTCCAAGAATGCACTCTAAAAAcggatggaaaaatggaaacccgaaa
atttttacgaccgactgaccgaccgactcactttttagacccaacgagga
cgcccaatgaagatatttgtgattgccgcctaagtTGAAGTTCCTTACCA
AAGGCTGAAGAAGGGCCGTTCATAAAAAATTGGTTGGTTCCCGTTGGTTC
CCGTCACCCGACGATTTGAACTGAAGAATTAGAGTCTGAGAGTCGGAAAC
CACTTTTCCTGACAGCTGAAACTCCACCATCACCCTCCATGTTTTCTCTT
TTGAGAGAAAGAGCAAACGCTAATCTTgtccaaaaaaacaattcaaaacc
CATTAATTCCGtttttccccaattttcaaGTCCGATTTTACATTGCGGAC
CATAtggaagcatcaaaacaaaccagcgGAGCTTTTGTGAAGTGAAAAAG
AGGCTTAGGGCAATCAAACGTCCCTTTACCACCCTTTTCTTCGGACTGTT
TCgttcaaacagaaaatattttttgcccGACCGACCCACTTTTTGATGGt
tgaaatgacgggaaccaaggGATTTTTTACGAACGGCCAAGACAGTCTAG
ACTTAAAACTCCCTATCAGGACAGGCAAATTTCCAGGTTTTGAGCTGCCA
CCATTTTTATTTCAACGATTGAGTTTGACTTCAGTTCGAAGAGCAAAATA
ATCAACCCAGGTTCTGTTTAATTAGTTGGAAACtattaccgtaacttggt
ctaatgtcgacacccctcctctaattctgacaccctttttatcagctgaa
atttatagaaaggtcgaaactgtttttctttgtttattgGTCAGAGagaa
ataatcctttttcaatcagtgattcaagctttcatattattcctttctct
aaagaagggtgtcggaattagaNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNACGTTCTAGGAACGCTATGGAACGTTCGTGAACGTTCAGGAACGTCT
CAAGAACGCTCCGTTTTAtttgtacttcaaatcgcttgtgATGACACATT
TTGTCaaaatccttttcattggataaataccactaaagtATACAAGagaa
gtaaacataaatttatcacCCGCGAGCACAGCTCAGCTAAGCGcaccttt
cttaaaaattcactatCTAAGAATTGGaacgggcaaagattaccgcgcgg
gctgatagcggacaaaggtagatattttcagttataatccaaggtagagc
AAACTAAatatagaaagggggtattttttagtgctatacgatgatcggta
ttttttttgaattctatgtttagatttttctacccagccctgttgctatg
tacgcgcgctctgttgctaagacctttgcttgttGAAATTCatgtgcgtt
tggtttgggaacgcgaaacacgaatgcgaactacccatgtctaaactttt
caatatatctccagaactaacagagtttttaaaattctgtaaaaagttcc
aagttcctgaatagttttactatgttctgtgaaagaatcataaccatcag
tcaaatactcgttcatctatttaagattgaagacaaaaatttgtgaagaa
aaataaaccttgagcacaaaaaatgcttttttaatcaCTTTTTTCCACCA
AAGAACAAATAATNGATGAGCAagggccacccctactgaaaatttcagat
caaaacaaacaaggaattattCCTGTAACTCTaggaaattggaaaaagct
ggtttttgactgtttctgatccttaagtgctattttttggtataaaagct
atgcaatttatgtttggatttctagaaagcttacccattcattgtcaata
tattttttatttgacagtaatctcttcatggaataaaaagatcttgtaga
gtaatttttcaaattttttttgccaaaatcaattttcgcatttcgcaatt
ttaccctacgcaaacgcacgtgaattggaagtgaaaccaaaataatttag
cccACACTGCCATTCGCATAACGCATCAATAAAAGTGAAAGGAGGTCCTG
ACTGATCTGGCCTGTCAGTTTAAGCTTAAtttcctatatcaggattagaa
acttaattttttgattCTGAGACCTTTTCGATGGTAATGTTTGAAAGCCA
TAATTTAACTTGTTTGTTCAATAAGAAGGCACTATACTAATGATGTAAAG
TAGCTATTTGACAGGTATAATTTAGCTAATAGTATAACTTGTGGATTGAC
ctttttgaaattaaacatacatttgtaaaaatatttgttttttatcttca
ttttattCTAAATCTAGGTGTAGGAGGCTTTATTTTGATCTGTCGTTAAA
TCAATTAACTTTTTAGAATGCATGGACAAAGgtgtattttcaatttaatt
tgactttGGCCCCTTTAAAGCTTAGGCATTTTTATTATGAAATACTTTAA
TAAATAGATGgtctttttaaatttaaagaaNTTTTGATCTGTCGTTAAAT
CAATTAACTTTTTAGAATGCATGGACAAAGgtgtattttcaatttaattt
gactttGGCCCCTTTAAAGCTTAGGCATTTTTATTATGAAATACTTTAAT
AAATAGATGGTCTTAAATTTAAAGATAGTTGCTTTTTATCAAAGCTCCAG
TATTGAGCCTTTTTTATTTGTAACAAGAGACccaaagattttaaataaac
ttaaaaaatcaGTGTTTTGATAGAAAAGTGCTTTGAAAATCTTTGGGTTC
GTTAGATAGATTGTTGTTTGTCAAATGTTTGATGGACAAAATTCAATTAA
TTCTTGaagaatcttataaaaaatatcagtCTTTTGACCATAAAGTCTTT
TCACCATTTttaccattcaaaaagtacgtagaCTCTGAGGAGGGGGGGAG
TGGGTCCTTtgaaaagcctaaaaaagcgTACGTGGGGAGGGGGTCAATCA
AGAAAATGTACCTACGCTTTgcaattttttccaaactgttttCCCCAGTT
TTTTCTAACTTTCtatttgaaaagtcaaaatattataaaCCTTTTAAACC
CATCTTACTTGTGTTATCCATATGTCACCCTATTATAATCTTTAAGTTTT
TTGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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gggggggggggggggtgattGGAAAAGCGTACAAGGGTGGAGGGGTTGGT
CGAATTTTGCTTACTTTTGAGCGTATGTACTTTTGAATGGCCCCTTACCT
TATTCACAGCCCTCTCTCGAAATAGTCTCAGTATTTTGATCAGCCTTTAA
ATTAACCATATACACTTCCATACTTTTACTGCACTGCTACTGTTGCAAAT
TTTAAGGGTATGTTCAGCTCAAATATGGAAAGTTTTGTCATAATGAAATC
TCTATTCATCTTTTTGTAGTCGTTCAACTTAACAAAATGGATGTATGAAG
ATTCTCTTATCACATACACCATGCATTGCAGTCCAGCAGGAGAGAAGAAA
CATTTTTCTGTCAAGATTTACCTTTTTCATCACTTCTGTCCTCTTCCCAG
AATTATGTATTCATTGGTAAGTATATAAAGTCAATGTcagatttatttat
ttgtttctttattATTCAAAAGAAAGGAAGAGAAGTGAGCTTCCATGGTC
ttacaatatttttttcgttttaCTGATTTAATAAACAACAAGTTTTTGAT
TCTACACATTACTGTCTtgaattttttagaaacttGACCAGTGGAGAGGA
CTTAATTTAAAAGGCTGAGATCTAATGAAgtattcaaatcattctttcaa
aaggttcttgtataaagtatattcattttttattttattctttttcagCT
GGACAAAGACTACAACAATATCCCATGTCacgaccactgacctttatata
accctggaccaaacaatatctgccatctttgattgtccagggtatatata
aaggtcagtgNATAAAgtatattcattttttattttattctttttcagCT
GGACAAAGACTACAACAATATCCCATGTCACGACCATGCTTTATCTACCC
TGGGTGTAAGTTTTCACCCAATAAtactctttttgaaaacaaatattGCA
CATTGGTCAAATAAATCTTCAGTTAGGGTGCAAGTGCAAAGTTTTGATTT
GTAAGTACTGAGCTTTGGCTTGGCTGACTATTTTTTCTGGAGTGTCCTTG
AAGGTTATTCCTCCTCCGTCTTACCACCCTGGTTCTAAATTCTGAGGTGC
CTATCATTTTTCTAAGGGTACTTTTGAAATTAACAGGTTAATGGAACGGA
TTTGAATTCAAGTAAAACTCTTTTAAATGAATgataattttaaattaatt
aaGTAATATACAAACTAATTCTAATAGTATATCAGCAATCaagttttaag
caattttaaattGGTATTTAAGAGGTCTTCCTATCCATACCTAGATCTTT
CTCCCCTCCTCTGTTGCTTCCATCCTTggcatcaaaatttttcactcATC
CCTCAAAACCTATTCTCCATTCCAAACCTATTTTCCATGAATCCAGAAGG
GGAAGGAAACTATTCCTAACtacaaatatttctaaaattattaTACTGCA
TTTTGCTGAATTTTGCTGAGTAGATTCTACAATCAAACCATCAGAGTATA
AATTTTCTCCTTACAGTGCAATATGTGTATGTTGTATTTCTCtcgctttc
agaaaaaaatcagaagaGATATAGAACATGCTATTCGAAGGCAAAGAGCT
GAAGACAACACCGAACCGTACCCGGTAAGTTTTTAATTAATCGCTGAAAA
GTGGATTCCTTTAAGTATcaactttttcatcttttaaaatttttaatgaa
aaacgagTACAAAAATTACCACTGGCACGGCACAAGAAATCTCAAAAGAA
ACCAGCATTGAAAACAACATCGAAACCTCTTCCAACAGCAAAAATGGGCA
AAGCTCTTCCAACAGTAAAGATGGTCAAAACTAATAAACCTGTAAAAAAT
GAACCTGCCTCAGCTGCAGTTCCAGTCCCAGTTGTAAAAGCTGCATCTAG
TTAAATGAAAAGAAACAACAAAGGATTCATATAAGAAAGATCCGCTCGCA
CATCAAGTTGGCGTAAGtttgctttttggacctaccccggtggggtggag
gtcctataaattaacccgtgttcgttagttagttagtaagttagttacca
acttttctcgagattggctcattcaatttttctgattttttgcacaaagg
tgcattactataaaccctcgaatgtgacggagcccgattttNNNNNNNNN
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GGGTTCAAATCATGTCAGggacctttcttcaaaagcttgccagtcgtcag
taaatggttgaattgacttcaaataaaaaacggatgcaattTCACATATC
TCTGAAAAGATTCCAAAAATAATATTCAGCTCTATCTATTACTAGAAATA
ACTGACGCTTAAAAGTGCCCCTTGCATTCGTTTAGATTAATACTTATCAG
ATTTGTGAAACGAGAAATAACTTTATAGAAACATTAATGGTTTTTCAAGG
TAAAGAAAAGCAATCCATAGCATAAAACTACTgtatatgttttatttttg
GTCGCCCCACGCTAAGTGGAGGAGACCTTTAAATTCGGTGTTTCTCGATG
ATAATAagacttttttgtgaaagtttggtTGCCCTATTCGGAATTAAAAC
TTTGGTGAATCGGGAAGTTATTTCCCGCGTAAATTTTTCCATAAGCCGCT
TTATCTCCGTTATATTACTCCGCGCTATCTTATCAGACAGTATTTGCGAT
ATAAAGATTCTAATTAGCTCCGTAGTAATTAGCGCAATTGTTTTATGAAA
TTTCTAAATAACGGAGATGATTAGAAGCCTCGTGAACGTTGTTGAAAGTT
TATGTTTATGCACAATGCCGGGACAGTGCAAGCAGCAGATAATTCTTGAT
GTAGATCTCAtctcaaattacattcattgatatTTATCCATTCGTGACGT
TGTTGAAAACAAACACAAACCTCTTTTCACTAGAATCACTTTTGAGGTTA
AAGATTTAGAAGATGGATGTTGTTGGTAattccaaaagaaaaatataaag
acaGAATTACTCAAAATCTATGATAATAGTTGATAGCATGTCCTAACCAA
CATCACTCACTACATATGGCAACCTAACCAATTAATTACTGGATCAAGTT
ATACCATGACTTTCTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGATTTGctataataattta
ttttaacTTTCTAACAACAATTTTTTATTGTACAAGCAAGAAACATTCAT
TAATATTACATTGTTAAACATGATAATTAAGTGACTGTCTTGAATAAact
tgaatgtctccttaattcgaacaattTATTTATCCCTTTAGAacaaattt
aggctattttcacCTTTATCCCTAATgttagttttaaaaattgataacTT
TCTGAAAACCTTTAAGATTTAAGTAATGACAAAAGCAACACAAATATTAC
ATACAcaaatatatgtttttttttataagcaagtgtataccccttggtca
ggctcgtgtatgcttaagttctcaaagtatccaggcatagtttatgctta
ttatatgcttaagaattatgcttaagaattatgcttatgattcaccccga
gccaagttttttaatgaaattttagaaattttgtaaaaaatttgttcaga
ttttgggagcagtggaatgtagctagccgtggaatgtctaattttttact
tgacctctaccaaaccagttaaaattgaaacaaaaacagataaaaattac
tacttgaaaaatattttaggctgacatatatgctcatgttatgcttagga
attctgcaaatctgagccttcatatgcttataagcgttatgcttataaaa
aaacaaaacatgtattacattgtttttgaagaatatttttcagcTCATTT
TATGTTTTCTAACATTAACTTAATAAAATcattaataaaatcaatttcag
CCATTTCGACATCAAAAGCAGGTTGTTTTTTAACGATTTTGTACATTCGC
AAATAAATCACTTGTTACACTGTTAAGCTTTttgtcttttacttttttca
aacttttaaactCTTTAAGCTACCTTCATTGggcgaccttccagcgcagc
tggtttattgtttttattttccatttgtTTCTGGGTTTTCAATAATTGAA
ATCATCGTTTATACCggattttcaaagaattctgtttgatagaaatccaa
aaaagtgaaacaaccgaacaaatgaagtatttttatgaattatttATATT
TATCACCTATTCATAAAAGGTGTATTCAGAACACAAGGCATGAAGTATTC
AAGACACAGCAGGAaaatataaacgactggaagtccatttcttttgtttc
ttttaagcGAACTTAtacattttaaataactttAATGATTTGAcacgaat
ttttttatggttaGAAAAAAATAGTGCGTTGAAGTTCAAAGTTAGTCCAA
TAACACTATCAAAGTTTGAAACCGATACTTTCTAAAACTATTCGATACTT
CCAGGTTAaacttttaagatatttgacgGAAGCTTGATAAACTGACGGGA
CAATTTTGTCTCTAGTTTCTATTGATATATAAGCCAGTTGAAAAGAGTTA
AACAAGAGAGAATTTCGACGAAGTTTTTTCGTCGTTAACAAATTACTCCA
ATGAGGTATCTTGTCAAATTCTATTGTCTTTGTTTACGATTTAAACGTAG
CGGCAACGAAGCTCTCAAAGAAAAAGGAGATAgacttccagtcgtttata
ttttcattaAGACAGtgactttttcgatttttcctttttgaccttttcga
tattttcgatttttgattatttcgatcttatcagttagggtcagggttgg
agctcgaaacattaCGTTCATATTTAGATAATCTGTAAAGTGTAGAAGAG
GCTTTCTGGGGGAAATTGTATACTCTTCGGAATAGGACCTTTCTCCCTCT
cacaaaacagttttttataagTAAATCACCTAGCATAGCTTTGAAatcta
tttttcattcaaaaaaagacTCTTCATAAATTTGCAGGATCCTAAATATT
CTTCCGAGTTACTGAATCTTATTATTTTAAGATTCTGAATtgggcacaca
acgttatttcaacattTATTTTAACGTCCGTCAGATAACGTTCTGATCAG
GTCTGCACATACCCGACATTCTCCAACCCTTATACAATCTCCAAATTTTC
AGGCCACGTGAAATTTTAAGGCGTGTGAAAATTTAGGGCGCGTAAAATTT
TTAGGGTGCATGAAAATATGAAGGCGCGTGAAAATTTAGGGCGCGTAAAA
TCTTTAGGGCGCGTAAAATCTTTAGGGCGCGTGAAAATTTTAGGGTGCGT
AGAAATATGAAGGCGCGTGAAAATTTAGGGCACGTGAAAATTTAGGGCTC
GTGAAAATTTAAGGGCGCAGAGGCACATAGGGTGCGTAGGGTGCGGAGGC
GCGGAGAAAAATGAGGGCGCGGAGGCGTGTAAGGTGcgtgatttagcaga
ctctcctataaattaacctttgttcgttcgtccgtccgtccgtccgtccg
tccgttcttTCGtaagttaccaacttttctcaggattgaatcataggaat
cttttaatttttggtacaaaggtgcaaaatggtggtggccaaaatgtgac
ggagcctgattttcgaaagaaaaaggcaaatttgggcccaaaaacggcta
aaaaactggttttttggacttggtgaaatattggatcattaactttttct
gattttttgcatgaaagtagggtaccatcataggtaaaagacggctcaag
cagatttttgcaaaaaaaaatttgttggctcaaaaaacgcatgtttatct
ataagaatcactattaataagcatacatcaatgttcttagtcaaattact
caatttttttatgagatagatgtttttttgctcataagggattactttta
gagagtatgtgtgtttagacatgaaattttggttgcttggctagtctagc
aagctagaagactaatttatacatagtagaaataaagcaaaaagtaattt
tagtcgtttagaaacctttgtgcactaactccaaacaaaagaaaagtgtc
aatattgcaattataattttttcccgctcaaaatagttcttgagaaaaaa
aatgtgtgtggatatgtgtattgaaagtttttcgttctgagttgatttct
ttttgagagtttgttattgcttgataaattgttttctcgctacgcaagtt
tctgtgtagctagccggggtatctataaggctggaacaccggattctgcc
agtcgtttatacaaactaaatcccgtattattattattatgagaAGTTAA
TACATTGTACTAATTTCAGTGGTAAAAACACACACCCAGTGAATTCCCAT
GTATATTTGGCCTAATTTGCCAGGTCCAAGCTGGTCCGAAACCTTCAAGT
CAAGGCTGGTTAAGCTATACAAATTGGTACACTGATTTTCTCCCAATGTT
TCCTGTTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNagaaacaaacgactaattttaataga
ttgtcactatttgtgttctgaatgattgtttaacggtcatgctcacgtag
atatcaattatatttctaaaatgcataaccaggtaggtccatgaAATTAT
CACTTGTTTTCTATATAGAAGAAGAAGGCAACTTTTACACAGAGTCCGAA
AAAATGAATTGAGATCTCAGATTGTTCCTAAAGTTTCAAGATCTCCGCAT
TTCAGTCATTTTATAAGCTTTGATCAAATCGAATTTTGATTCTCCCCTTT
CTCTTATAATGATTTTTCTCTGCAATGCGCTTGCAGTTTTCTGTTTGCAA
AGgcaatttcaataaaaacagggGGGAATTGCTTAAAAGGGTCCAGGACA
AATTGGGTACCAGAGggtctaaaattttcaaaaatcaaccaTCTTCCAAG
CCCCTTTCAAGACTCTTCTTGAGACTTCATTATTAAATAGCTTTTCATAC
TTTCAAACAACTTATTACAGGaatcttttatattttgataaCTATTGAAC
TCCTTTATTTTCAGAGAAACGAATTGCGTGCAGATATGAATGGTCTATTT
GTCGTCGGCCTTATGTTCAAATCTACAGATGAAGTGACAATTAAAGGTAA
TTCTAAACGGTATTTGACAAACCCCAATTTTATTGGTCGACCTTAACTAA
ATTGAATaaatattggaagtttatcgtggcttgaaTCACGatatttacgt
ttggctacatttcgagagattcttctcccatcatcgggctaATAATTGAA
TAAAGTTGAAAACATACAATTAGAAGTTATTCCATTACAATATTGCTTCG
GATTGCttgaaaagtatgaaaaatcAGGTAAACTCCTCTTCATATTTTTA
GCacttttttctgacttttccCGCCTTAAAATAATATGATTTCTAACCAT
TTGTATTTTTAGCGCGAATTGATTCGGTGCACAAGGGATCATACCTGTCA
GCAATGATTTACAAACTTCTCTCGGTAAGCTTATATTTACCTCAATACAA
TTGATTTCTAGTAGGGCAGCGTCCAATGACCGGAAAACcataaaaaagac
caaaaaaaagtctttgactttctgtaaagaaagtaaaatataatttttat
acaCAAGTAAAAACCCTAGTAAAAATCTTCATGATTTTATCTTTTACTGC
TGTAACcttgggcttttttctttttagttttatGGTGTAATGTCGTTGAT
TTATTTGGCTTATGCTATTAGTTGGTTTATTGACACTTGTTGTAAATATT
GGAAAGACTTGTTACGCGTACAATTTTGGATTGGTGGAGTTATCGCACTT
GGTATGTTGATAAATGTTTGTTCACTTTTTTCATAGTGAAAGCAGGATAG
AATGATTATAGTTGtatttcatgatatgcaccactagagagtcttctgag
aacttttaagaTTTTCGTTTGTCTAGGATAAGTGTCAAAATTCCGATTAG
TTTACAATTTGGAAACCGCTTCCGAAAGAACTAGTCTAATTTACACTTAC
ATCGTTTCCACATGAAAACCAGAAGAGTGTACGCTTATATCCTTAACAGA
CTTTTGATGTAGTTGCAAAGACTTCTTTTGTTCCTGAGTAAATCTCAGCG
GTAGTCTGGACCAACCCTTTCTCAGTTTCAAGACTAGCTTTTAATGAAAG
CTTattaatatttcaattttactattttataaaatattggtCAACCAATA
CGCTAGAAAGACATTTCAATCACACAGTCTTCTACCATGTTTCATATTTT
AGATTTCTTCCAATATATCCCGTCCACTTTAGGAGCTCACTATGATCGTA
ATCATGGAGGtagaaaaataactattttaCAGGTTTAAGAATCATTGCTT
AGTgcttttattattattactttatttaaatttttctgctttACAGGGAT
GTTTGAAAACGCACTATTTTATTCTGCATACCAAAGTATCAGTCACTATG
GCAAAGGTTTGTCTTTTTCAAttaagttattttttccgaggtctgaatcg
ctgcttCGAAAACGCTGAGCTTGCATAAAGATTGCAGTTATTCAACCAAT
CCTTAATACAAAAGGTAGCGCGTGAGGTAACTTAATTGTTCGATCcaaca
ctgcaatgtcttcacttcaatataacattttaatgaccagagaGTTAACA
ATGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007727XLOC_007727Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013825-exon-sc0000174-1491911889:87796..88183TCONS_00013825-exon-sc0000174-1491911889:87796..88183Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1510915933:87796..88183TCONS_00013825-exon-sc0000174-1510915933:87796..88183Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1575043694:87796..88183TCONS_00013825-exon-sc0000174-1575043694:87796..88183Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1491911889:95565..95711TCONS_00013825-exon-sc0000174-1491911889:95565..95711Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1510915933:95565..95711TCONS_00013825-exon-sc0000174-1510915933:95565..95711Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1575043694:95565..95711TCONS_00013825-exon-sc0000174-1575043694:95565..95711Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1491911889:96144..96200TCONS_00013825-exon-sc0000174-1491911889:96144..96200Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1510915933:96144..96200TCONS_00013825-exon-sc0000174-1510915933:96144..96200Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1575043694:96144..96200TCONS_00013825-exon-sc0000174-1575043694:96144..96200Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1491911889:96848..96919TCONS_00013825-exon-sc0000174-1491911889:96848..96919Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1510915933:96848..96919TCONS_00013825-exon-sc0000174-1510915933:96848..96919Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1575043694:96848..96919TCONS_00013825-exon-sc0000174-1575043694:96848..96919Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1491911889:106360..106441TCONS_00013825-exon-sc0000174-1491911889:106360..106441Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1510915933:106360..106441TCONS_00013825-exon-sc0000174-1510915933:106360..106441Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1575043694:106360..106441TCONS_00013825-exon-sc0000174-1575043694:106360..106441Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1491911889:106758..106819TCONS_00013825-exon-sc0000174-1491911889:106758..106819Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1510915933:106758..106819TCONS_00013825-exon-sc0000174-1510915933:106758..106819Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1575043694:106758..106819TCONS_00013825-exon-sc0000174-1575043694:106758..106819Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1491911889:107023..107146TCONS_00013825-exon-sc0000174-1491911889:107023..107146Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1510915933:107023..107146TCONS_00013825-exon-sc0000174-1510915933:107023..107146Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1575043694:107023..107146TCONS_00013825-exon-sc0000174-1575043694:107023..107146Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1491911889:107742..108001TCONS_00013825-exon-sc0000174-1491911889:107742..108001Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1510915933:107742..108001TCONS_00013825-exon-sc0000174-1510915933:107742..108001Clytia hemisphaericaexon
TCONS_00013825-exon-sc0000174-1575043694:107742..108001TCONS_00013825-exon-sc0000174-1575043694:107742..108001Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:87796..108001 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.153699	0.320634	0.402021	0.293348	0.928988	0	1.06264	0	0.349412	1.91579	0.527911	2.76788	5.20466	5.6946	1.72608	0.77009	0.603167	0.32683	1.81643	1.07035	1.95499	1.30149	0.486621	0	12.736	11.6167	0	0.465845	0	0
Blast
[Close]
BLAST of TCONS_00013825 vs. Swiss-Prot (Human)
Match: TM87B (Transmembrane protein 87B OS=Homo sapiens GN=TMEM87B PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.304e-18
Identity = 57/180 (31.67%), Postives = 93/180 (51.67%), Query Frame = 2 
Query:  554 NIPCHD--HALSTLGKKIRRDIEHAIRRQRAEDNTEPYPRNELRADMNG--LFVVGLMFKSTDEV-TIKARIDSVHKGSYLSAMIYKLLSFYGVMSLIYLAYAISWFIDTCCKYWKDLLRVQFWIGGVIALGMFENALFYSAYQSISHYGKGLSFSIKLFFPRSESLLRKR*ACIKIAVI 1078
            N+ C+       +L  K   +I +   ++R+ D          R   +G  +F+V +  ++TD    +   +  +    Y+SA  + L+ FY VM ++Y+ Y I W   + C YWKD+LR+QFWI  VI LGM E A+FYS YQ+IS+   GLS    L F    S +++  A + + ++
Sbjct:  136 NLDCNSDSQVFPSLNNKELINIRNVSNQERSMDVVA-------RTQKDGFHIFIVSIKTENTDASWNLNVSLSMIGPHGYISASDWPLMIFYMVMCIVYILYGILWLTWSAC-YWKDILRIQFWIAAVIFLGMLEKAVFYSEYQNISN--TGLSTQGLLIFAELISAIKRTLARLLVIIV 305
The following BLAST results are available for this feature:
BLAST of TCONS_00013825 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM87B1.304e-1831.67Transmembrane protein 87B OS=Homo sapiens GN=TMEM8... [more]
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