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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013836 ID=TCONS_00013836|Name=TCONS_00013836|organism=Clytia hemisphaerica|type=transcript|length=2389bp
CAACTACATAAGTCAGACAGGGTCTAACTCATTCAATATAGATTCAATAA
CATTTGAGAATACAATCTTATCACCTCTCAAACGAAGCATGTCTGAGAAT
GGTTACCTCAACGCTGAAACTGCTGTTCAGAATCTGACCATCACCACATC
TGCCAACACCACCACTAAGCCACAATTTAAACGTCAGAAATCGCTAGATT
TAGAAGAAGATCAGCAACGATCAGTTTCGCCATCATCATCACCAAAGATG
TTCTCATCACCAGAAGGTAGCGTCAATACAAACAGACGTGATTCAAATGC
CAGTTCTGATTCACAGAAAAGTGCCAAGAAACCAGCATCTTTGGATGAAA
TACAAGACCTGTATAGTGCTTTGCAAGACTTGGTCAAAACGAACGTGAGT
ACAACACCGTTGCCAGAACGACGTACCAAGATGTTGTCTCCATCACCAAT
GAGCAGCCCTAGGTTGAGTGATCGTTCATTAACAGTACCTGAGAAAACAC
TCAGAAAAATCTCCTCAAAAATCACACCGTCCTCTTCTTTTGAGAAAGAA
CAAAGCGAAGGAAGTCCAACGCCACGTTTGAAACATCGAAGAGGAGTTTC
AACAGGTACCATGGATTCTGTCATTAATTTAATGCGAATTTCACCGTTCC
CAGGACGTAAATTTTCACACGATGTCAATACAACGAGTCAAAAAGACAGT
AAAAAATTATCCACTTCTAAAACCCCGAATATGGTCTCCTCCAAGGCCGG
TAAGAAAGAACGCAATAGTGGCGATCATGGAAAACGTTGGAAAGGCTCCA
AATTATTTCACCGATTGCGATCGAAAAGTAACGCCGAATTATCCGACAAC
GACGACAAATTATCAACCGACGACGAGGAATGTGTTCGAGAAAAAAACCG
CCGTATGTCCGAAGCCGATGCATTGAAATTAAAGCGTAACCGAGATAGTG
GGTTAACACCACCGCAACGTAAAAGTTTACAAGAGGAGAAAAACAAGGAT
ATCGAGAATTTAGTTGCATCTTTAACCATCAAGAGTTCTGATTCCAATTT
GTTACAGACACCGAAAGAGACCTTTACGAACCCTTTGAATGAGTTAAATC
AACTTGAGAGCTGGTTCGAAAAAGCATCCGTTGCACTAAACCCTAACGTA
GGACGTTATATCTTAAATGATGAATCGAGTAGCGACGCCGCTTCACCAAA
CGTACGTGCTAACCGATTCCGTAAGAAGAACGGTAACAAACGTACTGGTC
CGGGAATACGTAGAGCAAACTCTAACGTTGGAACGTCGCACCGTAATAAG
GAGGAACGACGCGCCAAAAGGAATAAAATGACGTCCAAAAGTTTCGATGC
AACCGGATTagcgcacgctaaaagtacacCTGATTTATCCAAAACAGGTG
TTGAATCAGAAGATATTTTAAACGATACAGGAATATCGTATAAAGTTTTA
GGACAATTAAATCATTTCACTGAAAATCGAGTGCGCGATTTAACACCGAA
AGACAATAAGAAAGAATCGAAGAGAGTTTCTTTAGATGCTAATTCAGTTA
AACGATTACCTGACACGCCTTTATTCTATGTACCTGGGGACGAAGAGAAT
GGAAGACTAAGCCCAAGTGAGttatcaaaaacatttaaaagacAGAAATC
AGAAGGCTCAATGTTTTACACCgaggaagaaaacaaaaacgcTAAAAACT
TATTATCTCCACCTGCTGAGTCAGCAATTTCATACGAAAAGCCTCAAAGA
AGTGAATCCTTATCAACTCCTAATAAATCGAATAACAAAAGATCGAAcaa
caataaaataaagaacaaaacaaGACCCAAATCAATGTTTGACTATTTTG
ATCAAGAAATCTTAGGGGAGGATCCTAACGATGAGGTTTGGTCGTCCGAA
GAAAAAGACATTGTACAACAGAACAATTTTGATAATAACGCTAATTTTTG
TCGAGCCAAAATCATGAATAATGCACACCGACTATCTTTATGTGATTTGA
CCAAAACGACTGTGGTTCAAGAGAAAACTTTGTGGGACAAGTTCAGGAAA
GTGGCAGCAAGCAAGAAAGCTAAAGCTTtgATGGCTTGAATCTCAACCGA
ATCCAATCTCTAACTGATCGAAAGGTATGGACAAAGATGACCAAAATTTA
TGTATAAAGATGTTTAAATATAATTATGTTAATTTATATGAGTAATATAT
CATTTTTACACCCTTTTTTATTCCATTTTTGTACAGAATTTATGATAAGA
AATTGAGAAAGTTGAGAATCTAATCGTCAAAAATCCTGAATAAGTTATTG
CCCAAAAAATCCTGATTTAAATCATCAATTCCTTAAAGGGTAAACATTGC
GTGAACCACGtttcattaaagagaacaattaaaataacg Run BLAST on NCBI transcript from alignment at sc0000174:296584..300395+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013836 ID=TCONS_00013836|Name=TCONS_00013836|organism=Clytia hemisphaerica|type=transcript|length=3812bp|location=Sequence derived from alignment at sc0000174:296584..300395+ (Clytia hemisphaerica)
CAACTACATAAGTCAGACAGGGTCTAACTCATTCAATATAGGTTAGTGCT
TAAGGTCAgaactaaaaatattttgctctAATGACGTGGAAGATTAAtct
tttaatgaatttttttgttttcaatcaaaatttcaacCCGAAAGAAGTGA
GATTTTACTATTTAACATAAAcagttttagtcaaatttttgtccCTATGT
TCCTATTTTTAAACAACAGCAAACTTCAGAAGTGTGACGTTATGTTtagt
tttgtttcaaaattatcCCCATTAAAGTTTATTTTAAACTCTGTTTTCAT
TTGGCCCTTATTTCTGACCCTAACTTTCTCCTGACGATATCATTTAAAGT
TTTGACGCAGTTAATTTATTTAAAGAACAACTAAAACCTTAATTTGAGTT
TAGTCTACAATACTTCAAACCTTGACCGTCTTTCAGGTCTCAAATGATAG
CCTTAGGAATAAACAGTCTTAagattcaaatttcttttacgAGACTTTCA
GGACAATCTCTCAAAACAAGATAAAATAAATGGTTGAGAGACCAAGCCGA
AATAAGCCATCAAAAAATATCCTCAATTTGAAAATCACAGCAaagttgtt
tacttttttcctaTTTTGGTTTTCTAAATAACGGATAACTTATCCCCAAT
CCGGAAATTCCCGACTAGCGGATCCGGAGGTGCTAATCGCTCTAGAAAGT
CTCCTTGattgttgtttttgaattgggcgctatatttttcaaaaagctca
TCATGGGGGATCAACATTCAAATTGATACTGTATATTATCGCTATCTTGA
CGATATTCTTGATTCGCTTTTGAAGCTTCTTTGATCCTCTTTGAGATAGA
ATAAAACGCGTTTCAGATTTTTCTCTCTTGTTGccagatgaaatattttg
aaagtcaaaaattcttgaACTCTAATCGATCgattgctgatttttttgtt
gataatCGATATCTATAAGagtgtcttttttgaaaagagctttTTCTTCG
TGTTTGgcgattttatttattttagtgtATTTCATGTTTGGATAGCTTGG
TATAAGGTTCAAAAGATGTTAGAGCTACAAACGTTTTTCAAACCCTCAGT
CACGATGCTTGTGTTTTCGTAATCGATATAGAAGCATTcgtcattaaaaa
aaattttcttcaaaaaatttgaaaaataatattattctttctttttcatc
atCAGATTCAATAACATTTGAGAATACAATCTTATCACCTCTCAAACGAA
GCATGTCTGAGAATGGTTACCTCAACGCTGAAACTGCTGTTCAGAATCTG
ACCATCACCACATCTGCCAACACCACCACTAAGCCACAATTTAAACGTCA
GAAATCGCTAGATTTAGAAGAAGATCAGCAACGATCAGTTTCGCCATCAT
CATCACCAAAGATGTTCTCATCACCAGAAGGTAGCGTCAATACAAACAGA
CGTGATTCAAATGCCAGTTCTGATTCACAGAAAAGTGCCAAGAAACCAGC
ATCTTTGGATGAAATACAAGACCTGTATAGTGCTTTGCAAGACTTGGTCA
AAACGAACGTGAGTACAACACCGTTGCCAGAACGACGTACCAAGATGTTG
TCTCCATCACCAATGAGCAGCCCTAGGTTGAGTGATCGTTCATTAACAGT
ACCTGAGAAAACACTCAGAAAAATCTCCTCAAAAATCACACCGTCCTCTT
CTTTTGAGAAAGAACAAAGCGAAGGAAGTCCAACGCCACGTTTGAAACAT
CGAAGAGGAGTTTCAACAGGTACCATGGATTCTGTCATTAATTTAATGCG
AATTTCACCGTTCCCAGGACGTAAATTTTCACACGATGTCAATACAACGA
GTCAAAAAGACAGTAAAAAATTATCCACTTCTAAAACCCCGAATATGGTC
TCCTCCAAGGCCGGTAAGAAAGAACGCAATAGTGGCGATCATGGAAAACG
TTGGAAAGGCTCCAAATTATTTCACCGATTGCGATCGAAAAGTAACGCCG
AATTATCCGACAACGACGACAAATTATCAACCGACGACGAGGAATGTGTT
CGAGAAAAAAACCGCCGTATGTCCGAAGCCGATGCATTGAAATTAAAGCG
TAACCGAGATAGTGGGTTAACACCACCGCAACGTAAAAGTTTACAAGAGG
AGAAAAACAAGGATATCGAGAATTTAGTTGCATCTTTAACCATCAAGAGT
TCTGATTCCAATTTGTTACAGACACCGAAAGAGACCTTTACGAACCCTTT
GAATGAGTTAAATCAACTTGAGAGCTGGTTCGAAAAAGCATCCGTTGCAC
TAAACCCTAACGTAGGACGTTATATCTTAAATGATGAATCGAGTAGCGAC
GCCGCTTCACCAAACGTACGTGCTAACCGATTCCGTAAGAAGAACGGTAA
CAAACGTACTGGTCCGGGAATACGTAGAGCAAACTCTAACGTTGGAACGT
CGCACCGTAATAAGGAGGAACGACGCGCCAAAAGGAATAAAATGACGTCC
AAAAGTTTCGATGCAACCGGATTagcgcacgctaaaagtacacCTGATTT
ATCCAAAACAGGTGTTGAATCAGAAGATATTTTAAACGATACAGGAATAT
CGTATAAAGTTTTAGGACAATTAAATCATTTCACTGAAAATCGAGTGCGC
GATTTAACACCGAAAGACAATAAGAAAGAATCGAAGAGAGTTTCTTTAGA
TGCTAATTCAGTTAAACGATTACCTGACACGCCTTTATTCTATGTACCTG
GGGACGAAGAGAATGGAAGACTAAGCCCAAGTGAGttatcaaaaacattt
aaaagacAGAAATCAGAAGGCTCAATGTTTTACACCgaggaagaaaacaa
aaacgcTAAAAACTTATTATCTCCACCTGCTGAGTCAGCAATTTCATACG
AAAAGCCTCAAAGAAGTGAATCCTTATCAACTCCTAATAAATCGAATAAC
AAAAGATCGAAcaacaataaaataaagaacaaaacaaGACCCAAATCAAT
GTTTGACTATTTTGATCAAGAAATCTTAGGGGAGGATCCTAACGATGAGG
TTTGGTCGTCCGAAGAAAAAGACATTGTACAACAGAACAATTTTGATAAT
AACGCTAATTTTTGTCGAGCCAAAATCATGAATAATGCACACCGACTATC
TTTATGTGATTTGACCAAAACGACTGTGGTTCAAGAGAAAACTTTGTGGG
ACAAGTTCAGGAAAGTGGCAGCAAGCAAGAAAGCTAAAGCTTGTAAGTAT
CTTTTGAAATTACGTTTCTTCTTCTTGTCAAAAGTTTTTGTCTGAAATCT
TTAAGCTAGCCATGAGTTCGAATGAAATCTTTTCAATCATCAGCTTCCAT
TTGGGATTTATCTAGTTCCGGTGTAGAACATGTTTAGCTTCACAAAACTT
Tgcataaaaattctaaaaattattcttattaattaactaaaaatcaaatt
tcaagatttcttgAAACATTTCTTTAACAGGttcgatttttcattttcta
gtgATGGCTTGAATCTCAACCGAATCCAATCTCTAACTGATCGAAAGGTA
TGGACAAAGATGACCAAAATTTATGTATAAAGATGTTTAAATATAATTAT
GTTAATTTATATGAGTAATATATCATTTTTACACCCTTTTTTATTCCATT
TTTGTACAGAATTTATGATAAGAAATTGAGAAAGTTGAGAATCTAATCGT
CAAAAATCCTGAATAAGTTATTGCCCAAAAAATCCTGATTTAAATCATCA
ATTCCTTAAAGGGTAAACATTGCGTGAACCACGtttcattaaagagaaca
attaaaataacg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013836-exon-sc0000174-1491911889:296584..296624 | TCONS_00013836-exon-sc0000174-1491911889:296584..296624 | Clytia hemisphaerica | exon |
| TCONS_00013836-exon-sc0000174-1510915933:296584..296624 | TCONS_00013836-exon-sc0000174-1510915933:296584..296624 | Clytia hemisphaerica | exon |
| TCONS_00013836-exon-sc0000174-1575043694:296584..296624 | TCONS_00013836-exon-sc0000174-1575043694:296584..296624 | Clytia hemisphaerica | exon |
| TCONS_00013836-exon-sc0000174-1491911889:297789..299825 | TCONS_00013836-exon-sc0000174-1491911889:297789..299825 | Clytia hemisphaerica | exon |
| TCONS_00013836-exon-sc0000174-1510915933:297789..299825 | TCONS_00013836-exon-sc0000174-1510915933:297789..299825 | Clytia hemisphaerica | exon |
| TCONS_00013836-exon-sc0000174-1575043694:297789..299825 | TCONS_00013836-exon-sc0000174-1575043694:297789..299825 | Clytia hemisphaerica | exon |
| TCONS_00013836-exon-sc0000174-1491911889:300085..300395 | TCONS_00013836-exon-sc0000174-1491911889:300085..300395 | Clytia hemisphaerica | exon |
| TCONS_00013836-exon-sc0000174-1510915933:300085..300395 | TCONS_00013836-exon-sc0000174-1510915933:300085..300395 | Clytia hemisphaerica | exon |
| TCONS_00013836-exon-sc0000174-1575043694:300085..300395 | TCONS_00013836-exon-sc0000174-1575043694:300085..300395 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000174 | supercontig | sc0000174:296584..300395 + |
Blast
The following BLAST results are available for this feature:
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