TCONS_00013837 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013837
Unique NameTCONS_00013837
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013837 ID=TCONS_00013837|Name=TCONS_00013837|organism=Clytia hemisphaerica|type=transcript|length=1503bp
CACTTTTTAGTGCTTCAGCCAGTCATTTTTGCTTTTCAAACAGTGAAAAT
AACATTAACCTTGCAGTTTCTATCGACTATCAAATTGACGAgattcaaaa
aaacaaaaaaataactcaaaatgCAGGCTCTATTTGGGAAAAAGAAGACT
CCTGAGCAAATGCTCAGACAACATCAACGTACTTTGACAAGATCAATAAG
GGATTTAGATCGAGAGAGAACAAAGATGGAAAATCAAGAGAAGAAAGTTA
TCAATGACATAAAAAAGATGGCTAAAGAGGGTCAAATGGATGCGGTGAAA
ATTATGGCCAAAGATTTAGTAAGAACAAGAAGATatgtcaaaaaattcat
tcTAATGAAAGCGAATTTACAAGCAGTTTCCCTCAAAATACAGACACTTC
GGTCCAATAATGCAATGGCCCAAGCAATGAAAGGCTGTGCAAAGACCATG
GCAACAATGAACAAACAGTTGAAGTTAccacaaattcaaaaaatcatgAT
GGAATTCGAAAAACAGTCAGAAATTATGGACATGAAGGAAGAAATGATGA
ATGACGCAATCGATGACGTCATGGGTGATGAAGACGATGACGAAGAAAGt
gACGCCATCGTATCTCAAGTGCTGGATGAATTAGGTCTTGGATTAACCGA
CCAGTTATCCGAGCTTCCAGGAGCAGGAGGGAAACTACCAGCTGGTCAGA
AAGCACCAAGTGGTCAACAAGCAGTTGCTGCTGGGGGTGGTGAAGATGAT
GATTTACAAAATAGGTATGTCACAGTATTGCAACTTTTCTCTCGGTGGAC
GGAAATATGTTCAGTTCAAATTTCGGATCACCGAGATTTCAAACTAGGAG
TGTTattatcttcgctttctgatttgatcTACTCCCCCCCCCCTCTTCAG
AATCATTTAAGGAAAAAAAGTAGTTggagctccagcttctggactaaagg
ccggtctccacttgcgcgcgctgcgatcgcactttttggcttcaattctt
tttgcttggaCACGTCaaaggaaaaaaagtcagttcttttaaataacttt
cgaactactttttcaaatttaatgtataatagctcaaaattcaagtttga
GTATCCTCtttacgataaaaaaagaatggacaaaaaatttaaatcctgaa
gctcacagtATCTCGACAaacttgtatacttttttttggtgcatcCGGTA
GTTATAATTATATAGCACTCTGACATCATCGATTCGTCTAACCTTGATTA
GTTtgttattacaaaaaaaaagtggtCTGGCGATTTTTTTGGTCTATTTA
TTACATTTTGCGTGTCTACTAGACACGAAAGTGAAGTCAGTTATTTGAAG
CAGTATCTTCCCTAGTTCAAAGGTGGAATATTGGTAAAAGGTTacagaca
cccccttctcacagactcggtaggacttttttagccagtggggataaaaa
agcggactgaaactcgatgggggttAACATtcctatattttttatggctg
ggg
Run BLAST on NCBI

transcript from alignment at sc0000174:319425..334420+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013837 ID=TCONS_00013837|Name=TCONS_00013837|organism=Clytia hemisphaerica|type=transcript|length=14996bp|location=Sequence derived from alignment at sc0000174:319425..334420+ (Clytia hemisphaerica)
CACTTTTTAGTGCTTCAGCCAGTCATTTTTGCTTTTCAAACAGTGAAAAT
AACATTAACCTTGCAGTTTCTATCGACTATCAAATTGACGAGTAAGTGTT
TGAGAGAACTTTACTTTTTAAAGACACTGACCAATTTGTAATGCAGGACA
TTTTGTCATAgatagggtggacaggccaaaattttcccctcaattttttt
agaaaccaaactattGAAAGTCcttccttacctttgtgagaaaaacgagg
ggtcatttattagaattggttaagtgttcccaaagttattccattttcaa
aacacaaaaaatcaccttttcaaagaatcgcctccttacaccacgccagc
aagaaataatttttggaagCACCAAagcaaaatcgcgccaaaaatggcgg
atgaaatctagtgtTCCGTGTGGCGGGGGGNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcattctttttaataattt
tcctaacttaattggaaaatagatgattaacttttatatttgaacaatat
atatttgaataaagatgaagatttttaaatttataatatttaaatattgg
gtcctgaaattacacatgcgcgatcgtagcaagttttcgaaaatctggcc
cgatCATGGTCCAAAacgaggcccgaacatgtttgggccatgccgtgggt
cgtgcATATCATCACTTGTATCCTTTTTGTAGTGTTATTCATGGAGAGAG
AGggttatttttctcttttctcacttacttttggtttttacataaatcct
ttttgaccatctcgtaaacaagcttgaagtccttctttcagtttgttttc
actttattaTTCGAAGgcttcttcttggaataataagtTGTTAAAGCGAG
CGCTACTCCGACCCAGTCTGCGTCACTGCGAACGAGGAACCAGTGTGCGA
AcgatctttttaaagaaaaaattagagctcTGCTCGCAGGTAATACTTTA
ACTCTCTTCTTCATCCgagatgatacaggggtgtttgaacttttcaaaac
cNaagcttataacttgacaactacttgaccaaacttaaaaagttgtaccg
caaaatttaagttagcatgtcctctttctaataaaagtggttttgagtct
aaacaagactttgttcggcctcagtgcctcaccaaacgtccaaagttttt
tctgctgcacccggtatttttttgttttctttttcaagttttgctcatcg
aaaagggcggcaatgtagtgtcttctttttaATTGAGATTGTCAGCGCTG
TTgaatgttttgacgttgcaatgtcttcattttgaatatggtgttcggat
cgttcgcggactggaaccttttttatatcaactactgGTGATATATGTTt
gtattgattttgaattaatgagctaacatgtttcaatgaaattttgtgtg
atggaagataacagattttaaaaagaggaaagtcattttcagaactcttc
ttgtgcaaattttcttataaaaaacatttcctcTCGCTATCAGCCATGTT
TACAtgttttcgtgatttttttacttggcctcgtTCAAAATCGGTTTGGT
GTTGTTCTAATGCTctgtttattttaaaatttttggagaGATTACAAGGA
atagtttgaggattctgctgccacaagtgtttcaaccggtattccaacga
agccatattttggtttatacagaaattttgcccgctcaaatcaaaacaac
aaaatggtcaagctcactaaagcaaaacattgccgccacagcatttccct
ggataaaaattctggtcacgtgaccatccgtgattttagaccaatgaaaa
cccttcatttccccggattaaagttgtgtctacactaacacacgggaaat
ggctagaaaaagagaaaaaaaaccgggggtcaaattaaaattttcttcct
tcttgcggcaaacataaaagactttaagagcccatttatttaagaaaggg
gtgttatatcataaataaattatgtaagtaagtgatattttaagtaacaa
gttaatcaacaattttattttgaagtttgtctttaaaaacaaaacccccg
tgctagatgataatttcattttcttaacttatggacccatttggaagtct
ttgtaaaacagatcatttggcagtgtagttgctgcctatacaagaattgg
aatgtaaagtctgaagtcgtaactccttgtcagtgaccccgcagagaaat
ttttagttggcagacactgactttaggtaggtttggaaattgttttattt
tgaaatgtaatctacACTtcagatgaatacttttatttatttgatttatt
tggattcatgaaaggttcaaggtttgtttactttttatttcaaattattt
cattgatttattgagctgcaatagctgattgaaaaacgtcGGCTTGGcct
ccattttgaatttaaattttttttctcctgtactcggcaacttaaaggtt
gttcgtaatacgcgatttggcttacgcgtaacacttgtgctgcacaaagg
aagttctatagaagtttgtttttggtagtttttttcaagttcaaagacgc
TCGTTTGTGCACTGGTGACTTGACTCTACTGTACAAAAATTACGGAAAAC
GGATATTTGGACTTTTGTACTCTATGCTACtcgcaagcacttaagctaaa
gtcctgcaaaagcgggacgaaaatcagttttttgaattttgcaaaaaaac
gccacatagaagatctttcaaattcagtatgtgaatagtgcagtaaaaaa
tacaacttttctatttttccttttttttgcaaaagttctaggaatgaaaa
tagaggtataatgataattgaatactatccactgatgatccgcggcacta
tcgtaaagctaaaATGGCTTGGCATTCTCTTCCCTTGAGAAGATGATTGA
GAGATTAAAATTTTTCACCCGTGCGGGAGCTCGCGGGCGTTCTGCAAGCG
TTCTTGGTTTAATCCTCGAACCgcattaaaaatggtagaccaGCTGTgaa
aagatcattttgatggaagttgttggaatgtttacaagactcttgacaga
aaatcttttgttttattgtcaatgatgacagtgccgttattaattttgtt
agatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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tgtaagtgcactttatagttttgattcccattgaaaaatcatattctggt
tttcatgttattagatgctgttttagagctttagagctagcctgaaagag
accgccttatagtctagctaaccaaaaagatgcggccacctaagtATGAA
GTGaagtgaagtcaggtaacttgcatcagtggaggctaacatgcatagcc
ctcaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNttgttgaaatacgcattatttgcgcttctttGAAGCA
AGTAGCCAttgaaatagtatttattttatatattttgacttttgtttaga
aatattttgcagATGAGAGAgacccttccaaatttccattgcgatataat
tttgcggattttcgcggatgaaaCCCATTTCCgtgaaatccgcaaaattt
aatccccgcgaaagtttatcccattaaagtaatagAATGACATATACAGT
TTATATGGGTGAACAGGAACAGACCTCACaagttaggctaactgttatga
tcACCATTCTTTACGCTTACACCCACCATATTTTGCCCGCACACACCCGC
ACAGGCTACTTGCAACCAGATGGTACTAATCGAATGGTTGATggtgatcg
aagtaatcaataatgattgATAATAATCTAAGGTAGTCAGTAACCACCTA
TCgattttatcgttttttattgGTGATGGAATACTAATCCaaattatggc
attttctttgACCATTTTCGATTAGTTTGATCATTTTGATTAGTTTTCGA
TTCACTTTCGATCACTTtcaatcatattgaatacctttgATTGTATGGAA
TATGTTTCCTGAAGCAGCGCGTCGGAATCTGAAACCAATTTTATTTCACC
caattaaaacaaaataaacactCTCCTGGAAAGTTAGGGGGAGTTTCACC
CTAAAATTTTCCATAGAAAGGGAGGGGGTTGGAGCTACACAACTATTTAG
GGGGGTTTCTAATGTACTTGGAAGAGATGAAATCTCATCATTTACATGGG
GACTTTTAATAATTAAGCTTTTAATGGTTgacttcaattactcaaattta
aaagtttttgaagctgaaaaatcttcaactgcgctgcaatatttttatat
aaaatgagtaaaatattttatcttttaaagCTTGGAACTGCAAAACAATA
TACATTGGATAACCGAAAGACCTTGGGATGCCAAAAAAGTTGTGGATCTT
TGgtctttggggggacttaaactaatttttgcctgcgaacctaaacccag
gctgacgctatgacGTAGTATGAGGAAAATTTGGAGCTTTGCTATTACAT
TTTGCCTAAAGTGTGACAGTCATGAAATTCTTTTAGTATCATAGTAAGCC
ACTTTCCTGATAATAATTGTAACTTTTAGTTTTAGgattcaaaaaaacaa
aaaaataactcaaaatgCAGGCTCTATTTGGGAAAAAGAAGACTCCTGAG
CAAATGCTCAGACAACATCAACGTACTTTGACAAGATCAATAAGGTGAAG
ATCTATGTTTTATGAAGTATAAGGAAGATTTCCAAGCCTCCATTAAAGAC
TTTATATTAAATGTTTCTCTCATTGGCGGTTATTTTAAATCAACACTTTG
TTAGTCATACTACTTTCGGACTAGATAAGCACACATATTGACCAAAACTT
ATGTTTTAAAGGTAGAATAAATTGTTGttataaaatcaacaaaacattaT
TGGAAGATATATTGTTTGGCCATTACCTTTTGTTGTTGGTATCAAGTTTT
TCTGATGTGTCTTTTATCTATCTTTAACTTTGCTCTCTAACTCTAGGGAT
TTAGATCGAGAGAGAACAAAGATGGAAAATCAAGAGAAGAAAGTTATCAA
TGACATAAAAAAGATGGCTAAAGAGGGTCAAATGGTATTTCATGATAact
tttataaattttcatcGTATAATGCAACCCTAATGATTATGACATTTGAA
GAACCCAATTTTAGATCATAGTTCATCATTTTCAAAGCCATTGtatattt
gaattttcttttagaAGAAGTGTTTGTTCTGtttataacttttcaaattg
tgTATAATATATAATTCTCTACAATTCAACCAGTTTGCAGTATGGAAAAT
TTGCACTTTTTAAAGATAAAGTTTTAAGGTTCAACTTTGGTATTTGAAGA
TTTCTAACTGGCTCTTCCTGTTAATTGCTGTTATGAAATAATGTAACCGT
CTAAATGTTTTATTATAGGATGCGGTGAAAATTATGGCCAAAGATTTAGT
AAGAACAAGAAGATatgtcaaaaaattcattcTAATGAAAGCGAATTTAC
AAGCAGTTTCCCTCAAAATACAGGTAGGCATAAGCGAATTTACAACAGTT
TCCCTCAAAATACAGGTAGGCATAAGCGAATTTACAAGCAGTTTCCCTCA
AAATACAGGTAGGCATAAGGGAAATCCTGGAGCAGCTGAGCTTAACaact
aaaagagaaaaatagacCCTATTATAGAAGTCAATTTTTAGTGAAACCTT
TTACCCAATTCTCTGGATAATGAAAAGATTTATTCTAAAGCTCTCAATTT
ATTTTAACTTATATTTTTACATATAATCTATCTTGTAAATTTTAGACACT
TCGGTCCAATAATGCAATGGCCCAAGCAATGAAAGGCTGTGCAAAGGTAT
GGTTTTTTTTAGTTTGCGTTTTTGGCTTTTGTTGAGCCTGTCAAAATCAA
CTCAATTTCAAAGGATATCTTATTCATGTACATTCCTtctaaatatcttt
ttttgtctATTTCGCCACCTTTTACTAAGAGATGAAAAATAGGATGGTTA
GAATTACAATTTGAGACAAGTAGATATTTACTTACTTTGTTGCAAATCAG
GTAAAAAGTTTCGATCATTGATTCCATCCAGCATGTTTTTTTCTATCTTT
CTTGTCTCTAGCAAATGGTGACGAAATTAGAGGGGTAGCCAACATTAGAC
GTATTTACGGTGTCTCTAAATTAATGGTGGAATTTCATTGaatgttgttt
ttctttcttatagACCATGGCAACAATGAACAAACAGTTGAAGTTAccac
aaattcaaaaaatcatgATGGAATTCGAAAAACAGGTATAAAAAACGTTA
TTTAGCGATTTTATGCTACAGTAGAGTCTTCATATAATTCTGATCTCTCC
TATCTCTAATGTCTGGCCCCTCTCAGTTAACGAATCCGCATAAAATCGAA
ACCAGCCTATACAACTTGAAATTTCTACAActctagaaatttttattacc
cTTGTGTGTTCGAATTCTATTGATTTGGAATATATTCTGGCAGGAACCAA
TGGACAGTGATTGATCTACACTGGGAGTCTAGTAACACCCTATGCTTCCC
AGTTTCCAATTCATGTTAAAACATTCGGGAACAACATCGGGTCTTTTGTC
CTAAACCAATAATGTCGAGTCCTATGAAGGATTCGACGGCATTCGGCCAT
TTAATATCATAAAAATAAAGGACTAATGGTATCAAGAGTTTTTAAAATGC
AGCGATCCCAATCTCATTACAAATTTCATATTAACTAGCACAAATCTAAA
CAATGAAAAGTATAATATGAAATAAACAATTTTACTGAAAGCATTTTCCC
GCTAAAGGATCACACCCCAATGAATGTCATCTAATCATAATTAAATGTCA
TCATTCTTCTGGGCAATGACTTCACATTGTAGGATTTTAGTGCAGGGTGG
CCACgcatgctggaaaaactggGAAACTGAAAAAATggcctttttcagaa
aatttactggaaaaactggaaatagGTACATTTTTCAAACAGGaaagctg
gaaaaactggaaaaatattttttgatcttCGCATTTTAACTTTATGCCAG
GATTTCGTTAGAATTATTATTATGTGATTaacatatatttttattattta
ttatataaTTTTCATAAGATGTTATGATGATGTTATAAGATGCTAGTATA
GGCTTTTTAGGATTTTTATGAGCCTAGATATGTATGATCGATTGAAAAga
aatgtcttttgaaaatgtAGAATTAATAATTTTGCACTCGCCTATAGCTG
GAAAAAGGTACTGATCTTTGGGTGAAGGCTGGAAAAAGGTACATTTTCCA
ACTGAAAATACCTGGAAAAAAGGGtgttttttaccaaaaaagttggattt
ttCTTCTAAAAGAAGCGTGGCCACCCTTAGTGCCTGCACTGCATCGAATA
GTGGTTGTAAAAGATTCCTAATTATTGCTTTTAATAAAACTTTCTTCATC
TCTTTCAGTCAGAAATTATGGACATGAAGGAAGAAATGATGAATGACGCA
ATCGATGACGTCATGGGTGATGAAGACGATGACGAAGAAAGGTATGTCgg
agcaaaaaaaacaagcaacatgctgaatggacctacNNNNNNNNNNNNNN
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NNNNNccacttcagccattctttagagaatcttgccctccatctttgtac
aaaaatcagaaaaaagtaatgacaggattttgcacaaagtccaaaaaacc
ctattcttaggtagtttttggcctaaatttgcccaaataaattttttctc
aaaaatcgggctccgtcacgttctgggcattgccattttgcatcattttg
caaaaaatcagaaaaaactaatgagccaatcctgagaaaagctggtaaca
gacggacagacggacggacggacggacggacggacggacggacggacgga
cggacatgggttaatttatagaacctccaccggggcacccgtcggtaggt
ccaaaaaactggACTACCAAGATATTTAAAATGAGAGTTGAATAAAATCT
TATTTCAAACTCAAAGTTTCGTGGCGCGTGTATGCTTATCTTCAATTAAA
ATTTAGTCTGATACTGCTCTTTAAATTATCGAGCACTACACAAAAAGAAG
ATAAACTCCTCCCAAATACTACCAAGATATTATTTCTCATATTATCCTTT
TGTAGGTAACGTCTCGAACCTTTATcttaaatttctattttcttttcttc
aagTAATAATATTGTTACATTttgtaattaacttttttaattttttcagt
gACGCCATCGTATCTCAAGTGCTGGATGAATTAGGTCTTGGATTAACCGA
CCAGGTACAAGCATTCAAATTTGTCAGAAATTTTTGTCTCTTTATCCTAT
GACCTTTATGTGTCTAATCTTTTAAGGATTCATCGATCTTGTAGAGATCT
TTCATGGCATTTATGCCTcaagctaaggctacactgatgATTTTgcaggc
ggctgcaatgcaattTTCTTGTAAAGTTATAGGCTGGTTTCGAATTGCAT
TACAGCCGCCGGAGAAAAATCAGTTGTAGCCTTATAAAGTTATAAGTCAA
TCGTAAATACGCTTTTACTTGATATCTACAAAAAAGTAGTAACGAGTTCT
AAATTTGAGTATGACAAAAAATTCAAGCAGGAATTCAATGGCTGTTATTG
CCTACAGATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNttttttttttaattccccccccccccccctcttcaGAATCATTT
AAGGAAAAAAAGTAGTTggagctccagcttctggactaaaggccggtctc
cacttgcgcgcgctgcgatcgcactttttggcttcaattctttttgcttg
gaCACGTCaaaggaaaaaaagtcagttcttttaaataactttcgaactac
tttttcaaatttaatgtataatagctcaaaattcaagtttgaGTATCCTC
tttacgataaaaaaagaatggacaaaaaatttaaatcctgaagctcacag
tATCTCGACAaacttgtatacttttttttggtgcatcCGGTAGTTATAAT
TATATAGCACTCTGACATCATCGATTCGTCTAACCTTGATTAGTTtgtta
ttacaaaaaaaaagtggtCTGGCGATTTTTTTGGTCTATTTATTACATTT
TGCGTGTCTACTAGACACGAAAGTGAAGTCAGTTATTTGAAGCAGTATCT
TCCCTAGTTCAAAGGTGGAATATTGGTAAAAGGTTacagacacccccttc
tcacagactcggtaggacttttttagccagtggggataaaaaagcggact
gaaactcgatgggggttAACATtcctatattttttatggctggggatttc
aaatcttcttttttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNacggacggacatgggttaatttatag
aacctccaccggggcacccgtcggtaggtccaaaaaactggACTACCAAG
ATATTTAAAATGAGAGTTGAATAAAATCTTATTTCAAACTCAAAGTTTCG
TGGCGCGTGTATGCTTATCTTCAATTAAAATTTAGTCTGATACTGCTCTT
TAAATTATCGAGCACTACACAAAAAGAAGATAAACTCCTCCCAAATACTA
CCAAGATATTATTTCTCATATTATCCTTTTGTAGGTAACGTCTCGAACCT
TTATcttaaatttctattttcttttcttcaagTAATAATATTGTTACATT
ttgtaattaacttttttaattttttcagtgACGCCATCGTATCTCAAGTG
CTGGATGAATTAGGTCTTGGATTAACCGACCAGGTACAAGCATTCAAATT
TGTCAGAAATTTTTGTCTCTTTATCCTATGACCTTTATGTGTCTAATCTT
TTAAGGATTCATCGATCTTGTAGAGATCTTTCATGGCATTTATGCCTcaa
gctaaggctacactgatgATTTTgcaggcggctgcaatgcaattTTCTTG
TAAAGTTATAGGCTGGTTTCGAATTGCATTACAGCCGCCGGAGAAAAATC
AGTTGTAGCCTTATAAAGTTATAAGTCAATCGTAAATACGCTTTTACTTG
ATATCTACAAAAAAGTAGTAACGAGTTCTAAATTTGAGTATGACAAAAAA
TTCAAGCAGGAATTCAATGGCTGTTATTGCCTACAGATATAATAAGATAA
AACTTaatccgaaaattgattttgctatggaacacaaacaacaaaatttt
cattttttgaaaaactaattttatttcgCTTCATAACCAAAGCATCGTCA
GAGTATAGAATGATTTCATTAATTCATGCCTCTCTATTGGTCTCCCCGTT
CAAACAAAAAGCAACTAAAATTacactgtttttatttttcatcttagTTA
TCCGAGCTTCCAGGAGCAGGAGGGAAACTACCAGCTGGTCAGAAAGCACC
AAGTGGTCAACAAGCAGTTGCTGCTGGGGGTGGTGAAGATGATGATTTAC
AAAATAGGTATGTCACAGTATTGCAACTTTTCTCTCGGTGGACGGAAATA
TGTTCAGTTCAAATTTCGGATCACCGAGATTTCAAACTAGGAGTGTTatt
atcttcgctttctgatttgatcTACTCCCCCCCCCCTCTTCAGAATCATT
TAAGGAAAAAAAGTAGTTggagctccagcttctggactaaaggccggtct
ccacttgcgcgcgctgcgatcgcactttttggcttcaattctttttgctt
ggaCACGTCaaaggaaaaaaagtcagttcttttaaataactttcgaacta
ctttttcaaatttaatgtataatagctcaaaattcaagtttgaGTATCCT
Ctttacgataaaaaaagaatggacaaaaaatttaaatcctgaagctcaca
gtATCTCGACAaacttgtatacttttttttggtgcatcCGGTAGTTATAA
TTATATAGCACTCTGACATCATCGATTCGTCTAACCTTGATTAGTTtgtt
attacaaaaaaaaagtggtCTGGCGATTTTTTTGGTCTATTTATTACATT
TTGCGTGTCTACTAGACACGAAAGTGAAGTCAGTTATTTGAAGCAGTATC
TTCCCTAGTTCAAAGGTGGAATATTGGTAAAAGGTTacagacaccccctt
ctcacagactcggtaggacttttttagccagtggggataaaaaagcggac
tgaaactcgatgggggttAACATtcctatattttttatggctgggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007733XLOC_007733Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013837-exon-sc0000174-1491911889:319425..319515TCONS_00013837-exon-sc0000174-1491911889:319425..319515Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1510915933:319425..319515TCONS_00013837-exon-sc0000174-1510915933:319425..319515Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1575043694:319425..319515TCONS_00013837-exon-sc0000174-1575043694:319425..319515Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1491911889:326710..326818TCONS_00013837-exon-sc0000174-1491911889:326710..326818Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1510915933:326710..326818TCONS_00013837-exon-sc0000174-1510915933:326710..326818Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1575043694:326710..326818TCONS_00013837-exon-sc0000174-1575043694:326710..326818Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1491911889:327121..327208TCONS_00013837-exon-sc0000174-1491911889:327121..327208Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1510915933:327121..327208TCONS_00013837-exon-sc0000174-1510915933:327121..327208Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1575043694:327121..327208TCONS_00013837-exon-sc0000174-1575043694:327121..327208Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1491911889:327543..327647TCONS_00013837-exon-sc0000174-1491911889:327543..327647Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1510915933:327543..327647TCONS_00013837-exon-sc0000174-1510915933:327543..327647Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1575043694:327543..327647TCONS_00013837-exon-sc0000174-1575043694:327543..327647Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1491911889:327920..327970TCONS_00013837-exon-sc0000174-1491911889:327920..327970Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1510915933:327920..327970TCONS_00013837-exon-sc0000174-1510915933:327920..327970Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1575043694:327920..327970TCONS_00013837-exon-sc0000174-1575043694:327920..327970Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1491911889:328338..328409TCONS_00013837-exon-sc0000174-1491911889:328338..328409Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1510915933:328338..328409TCONS_00013837-exon-sc0000174-1510915933:328338..328409Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1575043694:328338..328409TCONS_00013837-exon-sc0000174-1575043694:328338..328409Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1491911889:329583..329665TCONS_00013837-exon-sc0000174-1491911889:329583..329665Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1510915933:329583..329665TCONS_00013837-exon-sc0000174-1510915933:329583..329665Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1575043694:329583..329665TCONS_00013837-exon-sc0000174-1575043694:329583..329665Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1491911889:330974..331028TCONS_00013837-exon-sc0000174-1491911889:330974..331028Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1510915933:330974..331028TCONS_00013837-exon-sc0000174-1510915933:330974..331028Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1575043694:330974..331028TCONS_00013837-exon-sc0000174-1575043694:330974..331028Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1491911889:333572..334420TCONS_00013837-exon-sc0000174-1491911889:333572..334420Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1510915933:333572..334420TCONS_00013837-exon-sc0000174-1510915933:333572..334420Clytia hemisphaericaexon
TCONS_00013837-exon-sc0000174-1575043694:333572..334420TCONS_00013837-exon-sc0000174-1575043694:333572..334420Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:319425..334420 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.209	18.0927	73.7615	26.0747	24.7361	19.6635	8.21625	7.26543	5.78044	8.93161	54.7842	26.1094	14.9145	3.94605	4.38021	45.503	5.68159	5.91809	6.07198	6.23021	37.0742	4.90633	3.76381	3.55269	5.93959	6.21289	23.8843	42.2536	42.393	37.07
Blast
[Close]
BLAST of TCONS_00013837 vs. Swiss-Prot (Human)
Match: CHM2A (Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 1.076e-85
Identity = 147/189 (77.78%), Postives = 172/189 (91.01%), Query Frame = 1 
Query:  121 MQALFGKKKTPEQMLRQHQRTLTRSIRDLDRERTKMENQEKKVINDIKKMAKEGQMDAVKIMAKDLVRTRRYVKKFILMKANLQAVSLKIQTLRSNNAMAQAMKGCAKTMATMNKQLKLPQIQKIMMEFEKQSEIMDMKEEMMNXXXXXXXXXXXXXXXXXXXXXQVLDELGLGLTDQLSELPGAGGKL 687
            M  LFG++KTPE++LRQ+QR L R++R+LDRER K+E QEKK+I DIKKMAK+GQMDAV+IMAKDLVRTRRYV+KF+LM+AN+QAVSLKIQTL+SNN+MAQAMKG  K M TMN+QLKLPQIQKIMMEFE+Q+EIMDMKEEMMNDAIDD MGDE+D+EESDA+VSQVLDELGL LTD+LS LP  GG L
Sbjct:    1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSL 189
The following BLAST results are available for this feature:
BLAST of TCONS_00013837 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHM2A1.076e-8577.78Charged multivesicular body protein 2a OS=Homo sap... [more]
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