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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013839 ID=TCONS_00013839|Name=TCONS_00013839|organism=Clytia hemisphaerica|type=transcript|length=1130bp
CAGTTTCCCTCAAAATACAGACACTTCGGTCCAATAATGCAATGGCCCAA
GCAATGAAAGGCTGTGCAAAGACCATGGCAACAATGAACAAACAGTTGAA
GTTAccacaaattcaaaaaatcatgATGGAATTCGAAAAACAGTCAGAAA
TTATGGACATGAAGGAAGAAATGATGAATGACGCAATCGATGACGTCATG
GGTGATGAAGACGATGACGAAGAAAGtgACGCCATCGTATCTCAAGTGCT
GGATGAATTAGGTCTTGGATTAACCGACCAGTTATCCGAGCTTCCAGGAG
CAGGAGGGAAACTACCAGCTGGTCAGAAAGCACCAAGTGGTCAACAAGCA
GTTGCTGCTGGGGGTGGTGAAGATGATGATTTACAAAATAGGTATGTCAC
AGTATTGCAACTTTTCTCTCGGTGGACGGAAATATGTTCAGTTCAAATTT
CGGATCACCGAGATTTCAAACTAGGAGTGTTattatcttcgctttctgat
ttgatcTACTCCCCCCCCCCTCTTCAGAATCATTTAAGGAAAAAAAGTAG
TTggagctccagcttctggactaaaggccggtctccacttgcgcgcgctg
cgatcgcactttttggcttcaattctttttgcttggaCACGTCaaaggaa
aaaaagtcagttcttttaaataactttcgaactactttttcaaatttaat
gtataatagctcaaaattcaagtttgaGTATCCTCtttacgataaaaaaa
gaatggacaaaaaatttaaatcctgaagctcacagtATCTCGACAaactt
gtatacttttttttggtgcatcCGGTAGTTATAATTATATAGCACTCTGA
CATCATCGATTCGTCTAACCTTGATTAGTTtgttattacaaaaaaaaagt
ggtCTGGCGATTTTTTTGGTCTATTTATTACATTTTGCGTGTCTACTAGA
CACGAAAGTGAAGTCAGTTATTTGAAGCAGTATCTTCCCTAGTTCAAAGG
TGGAATATTGGTAAAAGGTTacagacacccccttctcacagactcggtag
gacttttttagccagtggggataaaaaagcggactgaaactcgatggggg
ttAACATtcctatattttttatggctgggg Run BLAST on NCBI transcript from alignment at sc0000174:327670..334420+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013839 ID=TCONS_00013839|Name=TCONS_00013839|organism=Clytia hemisphaerica|type=transcript|length=6751bp|location=Sequence derived from alignment at sc0000174:327670..334420+ (Clytia hemisphaerica)
CAGTTTCCCTCAAAATACAGGTAGGCATAAGCGAATTTACAAGCAGTTTC
CCTCAAAATACAGGTAGGCATAAGGGAAATCCTGGAGCAGCTGAGCTTAA
CaactaaaagagaaaaatagacCCTATTATAGAAGTCAATTTTTAGTGAA
ACCTTTTACCCAATTCTCTGGATAATGAAAAGATTTATTCTAAAGCTCTC
AATTTATTTTAACTTATATTTTTACATATAATCTATCTTGTAAATTTTAG
ACACTTCGGTCCAATAATGCAATGGCCCAAGCAATGAAAGGCTGTGCAAA
GGTATGGTTTTTTTTAGTTTGCGTTTTTGGCTTTTGTTGAGCCTGTCAAA
ATCAACTCAATTTCAAAGGATATCTTATTCATGTACATTCCTtctaaata
tctttttttgtctATTTCGCCACCTTTTACTAAGAGATGAAAAATAGGAT
GGTTAGAATTACAATTTGAGACAAGTAGATATTTACTTACTTTGTTGCAA
ATCAGGTAAAAAGTTTCGATCATTGATTCCATCCAGCATGTTTTTTTCTA
TCTTTCTTGTCTCTAGCAAATGGTGACGAAATTAGAGGGGTAGCCAACAT
TAGACGTATTTACGGTGTCTCTAAATTAATGGTGGAATTTCATTGaatgt
tgtttttctttcttatagACCATGGCAACAATGAACAAACAGTTGAAGTT
AccacaaattcaaaaaatcatgATGGAATTCGAAAAACAGGTATAAAAAA
CGTTATTTAGCGATTTTATGCTACAGTAGAGTCTTCATATAATTCTGATC
TCTCCTATCTCTAATGTCTGGCCCCTCTCAGTTAACGAATCCGCATAAAA
TCGAAACCAGCCTATACAACTTGAAATTTCTACAActctagaaattttta
ttacccTTGTGTGTTCGAATTCTATTGATTTGGAATATATTCTGGCAGGA
ACCAATGGACAGTGATTGATCTACACTGGGAGTCTAGTAACACCCTATGC
TTCCCAGTTTCCAATTCATGTTAAAACATTCGGGAACAACATCGGGTCTT
TTGTCCTAAACCAATAATGTCGAGTCCTATGAAGGATTCGACGGCATTCG
GCCATTTAATATCATAAAAATAAAGGACTAATGGTATCAAGAGTTTTTAA
AATGCAGCGATCCCAATCTCATTACAAATTTCATATTAACTAGCACAAAT
CTAAACAATGAAAAGTATAATATGAAATAAACAATTTTACTGAAAGCATT
TTCCCGCTAAAGGATCACACCCCAATGAATGTCATCTAATCATAATTAAA
TGTCATCATTCTTCTGGGCAATGACTTCACATTGTAGGATTTTAGTGCAG
GGTGGCCACgcatgctggaaaaactggGAAACTGAAAAAATggccttttt
cagaaaatttactggaaaaactggaaatagGTACATTTTTCAAACAGGaa
agctggaaaaactggaaaaatattttttgatcttCGCATTTTAACTTTAT
GCCAGGATTTCGTTAGAATTATTATTATGTGATTaacatatatttttatt
atttattatataaTTTTCATAAGATGTTATGATGATGTTATAAGATGCTA
GTATAGGCTTTTTAGGATTTTTATGAGCCTAGATATGTATGATCGATTGA
AAAgaaatgtcttttgaaaatgtAGAATTAATAATTTTGCACTCGCCTAT
AGCTGGAAAAAGGTACTGATCTTTGGGTGAAGGCTGGAAAAAGGTACATT
TTCCAACTGAAAATACCTGGAAAAAAGGGtgttttttaccaaaaaagttg
gatttttCTTCTAAAAGAAGCGTGGCCACCCTTAGTGCCTGCACTGCATC
GAATAGTGGTTGTAAAAGATTCCTAATTATTGCTTTTAATAAAACTTTCT
TCATCTCTTTCAGTCAGAAATTATGGACATGAAGGAAGAAATGATGAATG
ACGCAATCGATGACGTCATGGGTGATGAAGACGATGACGAAGAAAGGTAT
GTCggagcaaaaaaaacaagcaacatgctgaatggacctacNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNccacttcagccattctttagagaatcttgccctccatctt
tgtacaaaaatcagaaaaaagtaatgacaggattttgcacaaagtccaaa
aaaccctattcttaggtagtttttggcctaaatttgcccaaataaatttt
ttctcaaaaatcgggctccgtcacgttctgggcattgccattttgcatca
ttttgcaaaaaatcagaaaaaactaatgagccaatcctgagaaaagctgg
taacagacggacagacggacggacggacggacggacggacggacggacgg
acggacggacatgggttaatttatagaacctccaccggggcacccgtcgg
taggtccaaaaaactggACTACCAAGATATTTAAAATGAGAGTTGAATAA
AATCTTATTTCAAACTCAAAGTTTCGTGGCGCGTGTATGCTTATCTTCAA
TTAAAATTTAGTCTGATACTGCTCTTTAAATTATCGAGCACTACACAAAA
AGAAGATAAACTCCTCCCAAATACTACCAAGATATTATTTCTCATATTAT
CCTTTTGTAGGTAACGTCTCGAACCTTTATcttaaatttctattttcttt
tcttcaagTAATAATATTGTTACATTttgtaattaacttttttaattttt
tcagtgACGCCATCGTATCTCAAGTGCTGGATGAATTAGGTCTTGGATTA
ACCGACCAGGTACAAGCATTCAAATTTGTCAGAAATTTTTGTCTCTTTAT
CCTATGACCTTTATGTGTCTAATCTTTTAAGGATTCATCGATCTTGTAGA
GATCTTTCATGGCATTTATGCCTcaagctaaggctacactgatgATTTTg
caggcggctgcaatgcaattTTCTTGTAAAGTTATAGGCTGGTTTCGAAT
TGCATTACAGCCGCCGGAGAAAAATCAGTTGTAGCCTTATAAAGTTATAA
GTCAATCGTAAATACGCTTTTACTTGATATCTACAAAAAAGTAGTAACGA
GTTCTAAATTTGAGTATGACAAAAAATTCAAGCAGGAATTCAATGGCTGT
TATTGCCTACAGATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNttttttttttaattccccccccccccccctcttcaGAAT
CATTTAAGGAAAAAAAGTAGTTggagctccagcttctggactaaaggccg
gtctccacttgcgcgcgctgcgatcgcactttttggcttcaattcttttt
gcttggaCACGTCaaaggaaaaaaagtcagttcttttaaataactttcga
actactttttcaaatttaatgtataatagctcaaaattcaagtttgaGTA
TCCTCtttacgataaaaaaagaatggacaaaaaatttaaatcctgaagct
cacagtATCTCGACAaacttgtatacttttttttggtgcatcCGGTAGTT
ATAATTATATAGCACTCTGACATCATCGATTCGTCTAACCTTGATTAGTT
tgttattacaaaaaaaaagtggtCTGGCGATTTTTTTGGTCTATTTATTA
CATTTTGCGTGTCTACTAGACACGAAAGTGAAGTCAGTTATTTGAAGCAG
TATCTTCCCTAGTTCAAAGGTGGAATATTGGTAAAAGGTTacagacaccc
ccttctcacagactcggtaggacttttttagccagtggggataaaaaagc
ggactgaaactcgatgggggttAACATtcctatattttttatggctgggg
atttcaaatcttcttttttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNacggacggacatgggttaatt
tatagaacctccaccggggcacccgtcggtaggtccaaaaaactggACTA
CCAAGATATTTAAAATGAGAGTTGAATAAAATCTTATTTCAAACTCAAAG
TTTCGTGGCGCGTGTATGCTTATCTTCAATTAAAATTTAGTCTGATACTG
CTCTTTAAATTATCGAGCACTACACAAAAAGAAGATAAACTCCTCCCAAA
TACTACCAAGATATTATTTCTCATATTATCCTTTTGTAGGTAACGTCTCG
AACCTTTATcttaaatttctattttcttttcttcaagTAATAATATTGTT
ACATTttgtaattaacttttttaattttttcagtgACGCCATCGTATCTC
AAGTGCTGGATGAATTAGGTCTTGGATTAACCGACCAGGTACAAGCATTC
AAATTTGTCAGAAATTTTTGTCTCTTTATCCTATGACCTTTATGTGTCTA
ATCTTTTAAGGATTCATCGATCTTGTAGAGATCTTTCATGGCATTTATGC
CTcaagctaaggctacactgatgATTTTgcaggcggctgcaatgcaattT
TCTTGTAAAGTTATAGGCTGGTTTCGAATTGCATTACAGCCGCCGGAGAA
AAATCAGTTGTAGCCTTATAAAGTTATAAGTCAATCGTAAATACGCTTTT
ACTTGATATCTACAAAAAAGTAGTAACGAGTTCTAAATTTGAGTATGACA
AAAAATTCAAGCAGGAATTCAATGGCTGTTATTGCCTACAGATATAATAA
GATAAAACTTaatccgaaaattgattttgctatggaacacaaacaacaaa
attttcattttttgaaaaactaattttatttcgCTTCATAACCAAAGCAT
CGTCAGAGTATAGAATGATTTCATTAATTCATGCCTCTCTATTGGTCTCC
CCGTTCAAACAAAAAGCAACTAAAATTacactgtttttatttttcatctt
agTTATCCGAGCTTCCAGGAGCAGGAGGGAAACTACCAGCTGGTCAGAAA
GCACCAAGTGGTCAACAAGCAGTTGCTGCTGGGGGTGGTGAAGATGATGA
TTTACAAAATAGGTATGTCACAGTATTGCAACTTTTCTCTCGGTGGACGG
AAATATGTTCAGTTCAAATTTCGGATCACCGAGATTTCAAACTAGGAGTG
TTattatcttcgctttctgatttgatcTACTCCCCCCCCCCTCTTCAGAA
TCATTTAAGGAAAAAAAGTAGTTggagctccagcttctggactaaaggcc
ggtctccacttgcgcgcgctgcgatcgcactttttggcttcaattctttt
tgcttggaCACGTCaaaggaaaaaaagtcagttcttttaaataactttcg
aactactttttcaaatttaatgtataatagctcaaaattcaagtttgaGT
ATCCTCtttacgataaaaaaagaatggacaaaaaatttaaatcctgaagc
tcacagtATCTCGACAaacttgtatacttttttttggtgcatcCGGTAGT
TATAATTATATAGCACTCTGACATCATCGATTCGTCTAACCTTGATTAGT
TtgttattacaaaaaaaaagtggtCTGGCGATTTTTTTGGTCTATTTATT
ACATTTTGCGTGTCTACTAGACACGAAAGTGAAGTCAGTTATTTGAAGCA
GTATCTTCCCTAGTTCAAAGGTGGAATATTGGTAAAAGGTTacagacacc
cccttctcacagactcggtaggacttttttagccagtggggataaaaaag
cggactgaaactcgatgggggttAACATtcctatattttttatggctggg
g
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013839-exon-sc0000174-1491911889:327670..327689 | TCONS_00013839-exon-sc0000174-1491911889:327670..327689 | Clytia hemisphaerica | exon |
| TCONS_00013839-exon-sc0000174-1510915933:327670..327689 | TCONS_00013839-exon-sc0000174-1510915933:327670..327689 | Clytia hemisphaerica | exon |
| TCONS_00013839-exon-sc0000174-1575043694:327670..327689 | TCONS_00013839-exon-sc0000174-1575043694:327670..327689 | Clytia hemisphaerica | exon |
| TCONS_00013839-exon-sc0000174-1491911889:327920..327970 | TCONS_00013839-exon-sc0000174-1491911889:327920..327970 | Clytia hemisphaerica | exon |
| TCONS_00013839-exon-sc0000174-1510915933:327920..327970 | TCONS_00013839-exon-sc0000174-1510915933:327920..327970 | Clytia hemisphaerica | exon |
| TCONS_00013839-exon-sc0000174-1575043694:327920..327970 | TCONS_00013839-exon-sc0000174-1575043694:327920..327970 | Clytia hemisphaerica | exon |
| TCONS_00013839-exon-sc0000174-1491911889:328338..328409 | TCONS_00013839-exon-sc0000174-1491911889:328338..328409 | Clytia hemisphaerica | exon |
| TCONS_00013839-exon-sc0000174-1510915933:328338..328409 | TCONS_00013839-exon-sc0000174-1510915933:328338..328409 | Clytia hemisphaerica | exon |
| TCONS_00013839-exon-sc0000174-1575043694:328338..328409 | TCONS_00013839-exon-sc0000174-1575043694:328338..328409 | Clytia hemisphaerica | exon |
| TCONS_00013839-exon-sc0000174-1491911889:329583..329665 | TCONS_00013839-exon-sc0000174-1491911889:329583..329665 | Clytia hemisphaerica | exon |
| TCONS_00013839-exon-sc0000174-1510915933:329583..329665 | TCONS_00013839-exon-sc0000174-1510915933:329583..329665 | Clytia hemisphaerica | exon |
| TCONS_00013839-exon-sc0000174-1575043694:329583..329665 | TCONS_00013839-exon-sc0000174-1575043694:329583..329665 | Clytia hemisphaerica | exon |
| TCONS_00013839-exon-sc0000174-1491911889:332953..333007 | TCONS_00013839-exon-sc0000174-1491911889:332953..333007 | Clytia hemisphaerica | exon |
| TCONS_00013839-exon-sc0000174-1510915933:332953..333007 | TCONS_00013839-exon-sc0000174-1510915933:332953..333007 | Clytia hemisphaerica | exon |
| TCONS_00013839-exon-sc0000174-1575043694:332953..333007 | TCONS_00013839-exon-sc0000174-1575043694:332953..333007 | Clytia hemisphaerica | exon |
| TCONS_00013839-exon-sc0000174-1491911889:333572..334420 | TCONS_00013839-exon-sc0000174-1491911889:333572..334420 | Clytia hemisphaerica | exon |
| TCONS_00013839-exon-sc0000174-1510915933:333572..334420 | TCONS_00013839-exon-sc0000174-1510915933:333572..334420 | Clytia hemisphaerica | exon |
| TCONS_00013839-exon-sc0000174-1575043694:333572..334420 | TCONS_00013839-exon-sc0000174-1575043694:333572..334420 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000174 | supercontig | sc0000174:327670..334420 + |
Blast
BLAST of TCONS_00013839 vs. Swiss-Prot (Human)
Match: CHM2A (Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A PE=1 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 2.528e-36 Identity = 85/104 (81.73%), Postives = 94/104 (90.38%), Query Frame = 3
Query: 3 VSLKIQTLRSNNAMAQAMKGCAKTMATMNKQLKLPQIQKIMMEFEKQSEIMDMKEEMMNXXXXXXXXXXXXXXXXXXXXXQVLDELGLGLTDQLSELPGAGGKL 314
VSLKIQTL+SNN+MAQAMKG K M TMN+QLKLPQIQKIMMEFE+Q+EIMDMKEEMMNDAIDD MGDE+D+EESDA+VSQVLDELGL LTD+LS LP GG L
Sbjct: 86 VSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSL 189
The following BLAST results are available for this feature:
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