TCONS_00013844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013844
Unique NameTCONS_00013844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013844 ID=TCONS_00013844|Name=TCONS_00013844|organism=Clytia hemisphaerica|type=transcript|length=801bp
ACTTTCGTTTCATCTCGATGCAATACTTTTTCGTTCAAAAGCCTATGATT
GGGGTGAATACATCGGCAgATCCACGCATAACTCCTACTCCCAAAAAGCG
ACGCCAACGCGGCTTTCTCTCCAGCATTTTTTGCTGTTTCGGTGCACAAC
AGTCCGCCAAAGCTTCATTTCAAACGAATTCAAGTGGTGGCGGTGGTGGA
TCAACCGGTGGTTCCACTACACGCGGAGGAGAGATCGCATCTAACCCGAA
CACGGCACCCACCACTAATAACACTACGGCCAGTGTAATCCACCAAGCGT
CACCTAACAACAACCAGAACAATTTATCGAAATGTTACGAAGATGATAAA
AATCATGAAGATGTAGTTCATGAGGAATCGTCACCAGAATCTTTTTACTT
ATTACCGGCATTAAGACATCAAGATCTTGACAAGAAATGCGCTGTCATTG
ATTTAGATGAAACGCTTGTACACAGTTCCTTCAAAcCTGTGGACAACCCA
GACTTCATCGTTCCCGTCGAAATCGATGGCATTGTTCATCAGgTTTACGT
GCTAAAGCGTCCTCACGTTGACGAGTTCTTACGTAGAATGGGTGAAATTT
TCGAATGCGTTCTCTTCACAGCAAGTTTGGCCAAGTACGCTGATCCAGTA
GCCGATTTGCTGGATAAAACAAATTGCTTTCGAACCAGGTTGTTCCGTGA
ATCTTGTGTATATTATAAAGGCAACTATGTCAAGGTAATGAGAAAttaag
tgttcctgtttcatatcagacacatatttcatatcaggacagtaactgcc
t
Run BLAST on NCBI

transcript from alignment at sc0000174:359035..370483+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013844 ID=TCONS_00013844|Name=TCONS_00013844|organism=Clytia hemisphaerica|type=transcript|length=11449bp|location=Sequence derived from alignment at sc0000174:359035..370483+ (Clytia hemisphaerica)
ACTTTCGTTTCATCTCGATGCAATACTTTTTCGTTCAAAAGCCTATGATT
GGGGTGAATACATCGGCAggtaaattatgtttttgatttttgtttctttt
ttttttgaacctCAAACAAGATATATAATGGTATGTAGTTGTTGGAAGAT
CCCCTCTAGTGATAGTATCATCTTACCATAtgtttgataaaattattttg
ttcaaaaagatcCCAGAGAATTTTACAGAGAGGTATGTAAATGACAATGT
AAAGGTTtatactctttttttataagagttaGAAGACTTGTGCTTAGATT
CACTTGGTTTTTTAGTATTTGGGAACTTAGTGGCTTAAACTAGTCTCATC
CTTTTTGCTCTATTCTTCTAGGCATTTCATTATGTCATTAGGGACCGTGT
ACAAATATTGTTCCACTTTTCAACGAATTTACACGATTTCTTTCGTTTCC
CAAATGATTTTAATCGTTTAAGAATCGTACCAATTTAAANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGATATTTAAGACGATTGTAAAcgattttcaagattt
aaaacgAATGAAAACGAATTCCTTTTCATAGTTTGTCAGTCATCGTTTAG
AAAacgatttttcttcaaattgttGGCTACTAAATCGTTTCATACCTTTT
CACTATACGATTTTTTCTCAAACGattaaaacaatatttgtacACGGTCC
CTTAATAGTTTGACCCTCAATTTGCTTAATTCAGTCATTCCAAAATTGTT
CTTAGTTTCATGCATTTAAGCCTcaatgtttttaatgaaattattcTAGT
GAAGAAAAGTCATTTTTTACTATACTCgtcttgttttttgtttttaccaC
CCTGGGTTTTTACAGTCAAACTTCGCATAATAGGGAAAATTTAGCCACGA
AAAAAGAAGTTTCAAAGCCAAGAAAATGTAGGCTCGCAAAATGGTCTCCa
taagataaataaataatGTCTTTGTCCTAAAGTATCATATTAaaaaccaa
aacacaaaatctgttttttataagaaagcgTAAATATAAGAATAAGAAGA
TTACAAGTAAGAATTTTGAGTATCCCAAGTTTTATAACAATTCACAGATC
ATAAAAAACACACACATGAAGTCAGGTCCATTCACAATTTCTAGGACTGT
GTATGCTTGTAATTCTAACACCAGTATCTGCTTGCTTATTGGTGATTAAT
GGTTCAACATTGtgtaaaaaacttaatttttaagCTTCTTATAAAAGACT
TGAatccaaaaatatcaaattgcAGTGTAACAGCCACTTTAGAACACACT
TTTGATGATAATAAGGAGAATGTCTCCAATATTGTCTTTCCTGAGAGAGT
TTTTCTGTACGTTACAAAGCACAGAGGATGCTACTAAAAGTTTGATtgtc
acgaaaaatattttcatcaaacTATTGACTTGATTCTTTTACTATTAAAG
TGTAAATTTTTCTATTCATCGGCCTTTTTATACTTCCTGTATTTGgcatt
ttattgttatttgtttGTCAATTAACTAGAACAAAGATAACTTGATGGTT
TTACCTGAACAAACTTGATTGAATGAACGATTGCAATCATTTATATGAGC
AGGCAAAATCGTAAGCTGTTTAGTTAAATTTATCACCTTTTAGaatcaat
caaatttttgaagccttcagatgttcttaactttctggttttaagcctaa
aaatgatcTTCGTGttgttattttcaccatttttttgagtatttttgtct
atttcctaagaaatcagcCCGGGGGGGGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNgccccccccccccccccggggaaatcaggt
gttttagagtcctcaaagtttaaaatattcttaacttgttcttaagattt
tgaccaCCGAAGCcttctgttctttttttatctcataaaaaacgtgtatt
ttagtTGGATAGAGCTTATCTGTGTCTTTATATTTGACATATTCACCTTG
CAGGTTTTGGAGTACTCATTGTAAGTTTATACCTAAGTATCTTGTCAGGT
GTTTCTTTGATAAAGtaagaaaatttataaatttaacCATTTGACCAGGT
TTTTCTGCCAAAATGTGTTGTTTTGATGAGTTTGCTTTCACAAGGAATAA
TGTTAAAACAAGATTTCATAATAAACTAGCCATTTCAAAAATACTGGCCC
ttgactacacgtttttttattttataaggaACATTAActtttgctctgag
cctggagttccttatttttacagagaatttcagcctcaaagttccttatc
gagttccttatttacatagctgctaagtttggataaccatctcttactgt
tccttaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattctcagcctgagc
agttcctaaacaattccttattttttggaccattttgagcctcgagttcc
ttataaacgtgttccttatataaaaaaaaacgtgtattcgttTTTACTAG
AAAACTAATCTCATCCAATAAAATGTGGGCAGCAGAGAGACTAGAAACTA
ACAAATGACTTCATAATGAGACATCATAAAAAGACATTGCTACGCTTTTT
AATGATCTTCAATGGTATTTTTAGTATTAAAATATTCTGAAAGAAGTCTG
TCCATACCGTACTCAAAATGTTTGAATAATCCTTGATAAGTTCACGGTTG
TCTTTTAAAGGTTTTCCATTTATCTGCATATAGAAGGTTGTTCTCACTAC
ATGTATTCCAGTACTATTTTctaagaaataaattttttctaggCTCGGGT
GCTCttattttggcactttgagcctcaaaatgttcattATCCggttctta
tttttagggacATTAGTGTATCTCCTATATGTACTGAATTTTTACTCCCT
TGATCCATAAAATTGTTTAAAACCCAGCGCTTCAAGGTTCAGCTgtataa
attttcttatttttgacgattttgagtCTAGTTGCTATTATAAAAACGAA
TGCAGTGATCAGAATATGAATAGTTTGCTTCTTATCCTGTTTGTTTGCTT
TCCCATTAAAAACGGACACCTTAAACTGCAATGAACTCAGAGATCTTTCG
GGCAAAATGGGGTAAGAGAAAATGCCTTTGGTCCAGACCCTAGCTAGCCC
AGCCCATTTGTCATAAAtaattgagaatttaaaaactCTTTGCGACAAGT
GAACACTTTTAATGCCACGTTGTTTTCTCATCGAAAACCAAAAAGAGTTC
ACGCATACTTTCACGGTGAACTGAGTTTAAACCtactttttcattcataa
tATTGATAATAAGCCACATCGTTTCCTTTCTTTCAGATCCACGCATAACT
CCTACTCCCAAAAAGCGACGCCAACGCGGCTTTCTCTCCAGCATTTTTTG
CTGTTTCGGTGCACAACAGTCCGCCAAAGCTTCATTTCAAACGAATTCAA
GTGGTGGCGGTGGTGGATCAACCGGTGGTTCCACTACACGCGGAGGAGAG
ATCGCATCTAACCCGAACACGGCACCCACCACTAATAACACTACGGCCAG
TGTAATCCACCAAGCGTCACCTAACAACAACCAGAACAATTTATCGAAAT
GTTACGAAGATGATAAAAATCATGAAGATGTAGTTCATGAGGTATGGTga
cacttttttatatttttgtccACCTCCTTTCCATTCATGGCCGTCCAGTA
TACTGATTGGTTAAGAGTCATAATTTAAAACCCAACATAATCCCTCAACA
CTTGGAATTTTCACTGTTTTCGACAATGGGAAGAAATGCCGTTCTCTCTT
TGGCCTATATCACTACTATGATAAAAAGCTCTCAAATGATATTTTGGCAC
AATGTGACCTGGTATATTTGTACTTTTGAACGCCTAGCAATTACAGCTCA
TTCTTTTGGCACTCTCTATAAAGCAAAACGTTTAAACAAGCCACAGATCG
CGAATCTAAAAAGGAAAAGGGTAAAGATTTGctgtttttaaatcttttta
atgGATGATAGGTTGGGGCCAGAGATAATTGGGAAGATTATTGggttaaa
aataaattatatttaCTTATGAGCCATGAGAGTTAAAAggtttattgttt
tattttagtcTGAGGTAAGCAGCCATCCAGTACTACTTTTTTACAAAAGA
GGGCAAACTCTGACCCACACTGATTACATCGATTTCCAACCCTAGACCTG
ATTGAAAAGAACGAAATGGTATTGGGAGAATACATTGAAAGGTTTAGTCG
CAACTACTCTAATAAATAATGCCAAAGATATTTCttgagaaatacaaaat
tttgaacaaagTATTTAGAATAGAAATCAATTATATTTGATGGCATCGCT
AATTACCTCGATCGTTTACTAATGAGGatgaaaaagtcttatttcttttt
gttttgaaatagtGGGTAGACACTATGTTAAGTGATTATTAATTGAGATA
GGAAATAATCATTTAAAGACAAGTAATTTGAAATTGATAAACACCTTTCG
GCCTAGTTGTTTGTTGCAAATCCTTGCTTATATGCCAAAAGGAATAAATA
ACTTTTTCTCCTTAGTGGGGCAATGTAGTAAGATGTGCACATAGCAGCTT
TAAAAATTACTTTGAACTTTCAgatgtttttttaactttctctAAAAGTA
tttctaaaatctttgaaaattttggagaaataATATGGTCCTAGAATTAC
GGTCTTCCATGTCCAGTCAGAGATCAATAAATATCTCACCACTCAACCTA
CCTCCTCCAAAAAACTCATCAGTTAGTTNAGATCAATAAATATCTCACCA
CTCAACCTACCTCCTCGAAAAAACTCATCAGTTAGTCATTTGTTGACCGC
AAGAATGCAATCTATATTTCTAAATGATGCAATAAAAATCTCAAAGTAGT
TCTTTTTAATGACTCGCCAATTTACTTTTTGAAAGATTAGTCAATTTTCT
TGCATATTATATTTTTGTCTTCTTGGACCATGAATAAAAGACAGTCGACT
TAATTAATAAAATACTTGAACACCGGTGAAACTTTTATCACAGCGGGGAT
ATTGTTCCAAGCTTTAAAAATCGAGCGGGGATTGTTTTGGAGTGTAATTT
CTTtcaattgaatttcgaatggggataaaatcaaagccaatttcccagtg
gggctataGTTGTTGAGTATTTTTCCAactgggacgaaattttggccaaa
atttccagTGATGGGTGTTAAAAGTGATTTTATAATCTTTGCTGTACCAT
GATCTTTGCCTTGCATACGCACCACAAAATTACATACATCAATACTCTAT
ACCTTGTGCTTATTTTGCCACCATCTTATATTGCTAAAAACTTTTACTCC
AATTCTTTAGGAGTATTTTTGTAACTGATGATCTTTTCCTCTTACTTGCT
ATCTAActtaaatttgaaatgaaactaTTCCTGAACCCATACAGAGATCG
AACCTGACTAGAAAAAGGTTAATAGTAGTTGCGTTTTATttgtaatgaaa
ttttttgcCTGCCTCACATtccttcttaatttttttataagaacaataag
acTCAAAATCGTCCAAAAGTAAGAACAGTTATTGTAGAGCCTAGAAGTGC
TGAATTTCAAGCATTTTGCCCTAATATAAGAGCAGCCGAGCGACATcaga
aatttactggttcttataaacaaaCAGAACGTAGACCAAAAATTGTTTCA
AGTAAATCAATATTTGTAACATTTGAAAGTTGTAAAGAGACATCATCTCT
GATTTCAAatgtctacacgtttttttataagaacatgaagattttttgaa
gcctttggatgttcttaactttttgagttttaagcctaaaaatgttctta
ttttcgtcattttttgagtatttttgtctattttcctaagaaatcgggtg
ttttagagtccacaaaatgttcttagattgttcttagcattttggtcatc
gaagccttatgttcttatatagtttgttcttattaaaaaaaacgtctaTT
GTCTTGAATGGACCTTGCTTATGATGATGGATGAAAATCCcccatttttt
aaacaaacacAGAAAATAAAGTCAAGTTTTCTCTATAAATGTAAATCCCA
ACCATTCATGTTCGAAATGTGTGAtcacaaaattttatcaaaacatttta
aatccttgtcgaaagaaaaaaaaattgatatgataAATGGAAAAACGTCG
CAAAAAAAGTCTCGGCTGTTACATATCTTGACTCCAAGtggaaacttttt
atttttgtttttaattggaCGAGGAAAGCAAATTTTTGAATATGAAGAAC
AGTACTTTGAGAATTTGTCCATCCAGAAGATAAGAAAATGAGTGATACTT
CAGAGTATATCTTTTCGTTATCTAAACTACGCGAGCATGCGCGGAAATGG
CATTTCAAACAATTGAAATTGAGCTGGGAAAAAAGACAAGGAGGCTCTTc
ttcagaaaaaaaagaatgtcAAAATATTATCAAAGATGATAAATGTGAAA
AGGTACTAAAATAGAGTTCAGTAATGTATAGAGTATTCGGTATAAGTGTG
TCCGGTTATTTTTTAGGAAACCGAAGGACAAAGGGTTTGAAATACTCCTC
ATATCCCATTAATGTTtcctttattttgacaaaatattatattttttttg
gggggggctGTGGAAAGACAAGGCGCACCTTGTTGCTCTCTAGATCAGTC
ATGTTGTTTCCCCATTCCGGAAATAGCAGTTTTATAGCCAGAGACGAAGA
ATTGTGAAACAAAACTGTAAAAGTTCCTAAACAGAACTAAAGTCGCCAAA
CTATTCAAAAAGTTCTCCCTTTTTAAATCAGACTTTATCCAGCTAAATCA
TTCAACATTTCTTCTCTTATTTTCTCCAGGAATCGTCACCAGAATCTTTT
TACTTATTACCGGCATTAAGACATCAAGATCTTGACAAGAAATGCGCTGT
CATTGATTTAGATGAAACGCTTGTACACAGTTCCTTCAAAGTGAGTAGTA
GTACTCCGATCAAATCTAGCCCGgagtccacttaaagctttttttataga
ctggacggcgcgattaagtggtctggtagtatatggtaatatgcttttgc
ttaggctgACTGTAAAACAGTATGAAgctatgtttttatttgaaaatgag
ggatttcaaatctgttatagatgtttgtttctcatttttgattatatctt
tcaactccaagtagtttttttttgttatttggatttttaacattttctct
caaaatggcgaccttgcTAAGCGCTCCTagagtctacttcactggactca
gcgtcataaaaaaatatcaaaaagcaaagttcagccaaaagtagactcta
gtatAGATCAAATCTTACCGATTTAATGGAATGAATTTAACTGTTAAACT
CACACAACCTTGGATAATCAATAGAGTTATTTTTGATAGATGTATTCCTC
TCTGCACACTGAATTCTTATGAAATTtccctttctttcttttctagcCTG
TGGACAACCCAGACTTCATCGTTCCCGTCGAAATCGATGGCATTGTTCAT
CAGGTATGCGTTCATATAACTCACTCGTGGCTGCCTAAGATCATACATTT
TTCCCATCTGTTTTCTTGATACTTTTATAAACTTATTTTGATCCGCACAT
AGACGTTCAGGCGTTCATTAAATACGTTTCAATTCAAGGTTTTAGGCTCC
AATGCAATCAAACTATGCTCGAAATTTTCATTGACCCAAGACTCAGTATT
TTGTCAACACAGCCCCTCGCGTAGATTTAATTGTCGCCATTTATAAATTC
ATGTGAATGCTTTATGTGTTATTTAAGCTATAGTGTTAAGTCTTAGCACC
TGACGGTAATCAATCAAGATCCGAACTTATATAGAGCTTTCTATAGTATC
AGTAGTACGGTGGAGTTTCCATGACACGAACCATTACGGAGAACACAATG
CTgctcgagttatggaaattttAGAGCTTCGTAGACTCCTTAATAAAAGC
TTATAGGTTGATCGAAAACATATTTGAGTTATAAGAGCTTTATTCTACGT
ATCTCTTAACATTTCTGTACATTacattaaaatctttttcaggTTTACGT
GCTAAAGCGTCCTCACGTTGACGAGTTCTTACGTAGAATGGGTGAAATTT
TCGAATGCGTTCTCTTCACAGCAAGTTTGGCCAAGGTAAAGAATACAttt
ttctcgagatgcataaatttattgttgtcctcgttttcaagcagatttca
ttgctatgaaattatacatttaaaccaatttagaTTCCTAAAAGGCAAAC
tgaaacattaactctaaaacaaaagtatttgaaattcaaaatgtctcatg
aggtgtaaacaacacaattatcattgtgaatgtataattttatagcaatg
aaatctgtttgaaaacgaagaCAACAAGAAgttctcgagaagagtgtatt
gctTGTTTGGTTTTTTCTATTCCACAGTAATAATATTCTAAGGTTTGAGA
TGTAAAAATCGTTttcaggaatttttttttcatgataatGTTCCACTcgc
aattatctttttaacgaacACAATAACGGATCGCAATATGATTTAATCtt
gagcaaaaaatattttcatttgtaatttcactgaaagtgaatttgaaaat
aactttgatTTTGATTATCGAGGACTGAGTTAAGATTTACTTTCGTGATA
CAAAATATATTTCGTATGTATTTTACTTTACAGTACGCTGATCCAGTAGC
CGATTTGCTGGATAAAACAAATTGCTTTCGAACCAGGTTGTTCCGTGAAT
CTTGTGTATATTATAAAGGCAACTATGTCAAGGTAATGAGAAAttaagtg
ttcctgtttcatatcagacacatatttcatatcaggacagtaactgcct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007734XLOC_007734Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013844-exon-sc0000174-1491911889:359035..359103TCONS_00013844-exon-sc0000174-1491911889:359035..359103Clytia hemisphaericaexon
TCONS_00013844-exon-sc0000174-1510915933:359035..359103TCONS_00013844-exon-sc0000174-1510915933:359035..359103Clytia hemisphaericaexon
TCONS_00013844-exon-sc0000174-1575043694:359035..359103TCONS_00013844-exon-sc0000174-1575043694:359035..359103Clytia hemisphaericaexon
TCONS_00013844-exon-sc0000174-1491911889:364921..365225TCONS_00013844-exon-sc0000174-1491911889:364921..365225Clytia hemisphaericaexon
TCONS_00013844-exon-sc0000174-1510915933:364921..365225TCONS_00013844-exon-sc0000174-1510915933:364921..365225Clytia hemisphaericaexon
TCONS_00013844-exon-sc0000174-1575043694:364921..365225TCONS_00013844-exon-sc0000174-1575043694:364921..365225Clytia hemisphaericaexon
TCONS_00013844-exon-sc0000174-1491911889:368464..368574TCONS_00013844-exon-sc0000174-1491911889:368464..368574Clytia hemisphaericaexon
TCONS_00013844-exon-sc0000174-1510915933:368464..368574TCONS_00013844-exon-sc0000174-1510915933:368464..368574Clytia hemisphaericaexon
TCONS_00013844-exon-sc0000174-1575043694:368464..368574TCONS_00013844-exon-sc0000174-1575043694:368464..368574Clytia hemisphaericaexon
TCONS_00013844-exon-sc0000174-1491911889:369081..369137TCONS_00013844-exon-sc0000174-1491911889:369081..369137Clytia hemisphaericaexon
TCONS_00013844-exon-sc0000174-1510915933:369081..369137TCONS_00013844-exon-sc0000174-1510915933:369081..369137Clytia hemisphaericaexon
TCONS_00013844-exon-sc0000174-1575043694:369081..369137TCONS_00013844-exon-sc0000174-1575043694:369081..369137Clytia hemisphaericaexon
TCONS_00013844-exon-sc0000174-1491911889:369677..369769TCONS_00013844-exon-sc0000174-1491911889:369677..369769Clytia hemisphaericaexon
TCONS_00013844-exon-sc0000174-1510915933:369677..369769TCONS_00013844-exon-sc0000174-1510915933:369677..369769Clytia hemisphaericaexon
TCONS_00013844-exon-sc0000174-1575043694:369677..369769TCONS_00013844-exon-sc0000174-1575043694:369677..369769Clytia hemisphaericaexon
TCONS_00013844-exon-sc0000174-1491911889:370318..370483TCONS_00013844-exon-sc0000174-1491911889:370318..370483Clytia hemisphaericaexon
TCONS_00013844-exon-sc0000174-1510915933:370318..370483TCONS_00013844-exon-sc0000174-1510915933:370318..370483Clytia hemisphaericaexon
TCONS_00013844-exon-sc0000174-1575043694:370318..370483TCONS_00013844-exon-sc0000174-1575043694:370318..370483Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:359035..370483 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.760165	15.0798	18.2075	9.59548	16.7635	11.9321	13.7196	3.20537e-06	3.68588	44.7431	44.832	34.0305	27.8454	11.3425	18.4366	26.9253	13.4676	0	0	0	0	7.67884	4.0197	32.0569	9.06922	0	0
Blast
[Close]
BLAST of TCONS_00013844 vs. Swiss-Prot (Human)
Match: CTDS1 (Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS=Homo sapiens GN=CTDSP1 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.271e-62
Identity = 93/113 (82.30%), Postives = 102/113 (90.27%), Query Frame = 3 
Query:  396 YLLPALRHQDLDKKCAVIDLDETLVHSSFKPVDNPDFIVPVEIDGIVHQVYVLKRPHVDEFLRRMGEIFECVLFTASLAKYADPVADLLDKTNCFRTRLFRESCVYYKGNYVK 734
            YLLP  + QD DK C VIDLDETLVHSSFKPV+N DFI+PVEIDG+VHQVYVLKRPHVDEFL+RMGE+FECVLFTASLAKYADPVADLLDK   FR RLFRESCV+++GNYVK
Sbjct:   78 YLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVK 190
The following BLAST results are available for this feature:
BLAST of TCONS_00013844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTDS14.271e-6282.30Carboxy-terminal domain RNA polymerase II polypept... [more]
back to top