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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013852 ID=TCONS_00013852|Name=TCONS_00013852|organism=Clytia hemisphaerica|type=transcript|length=2177bpRun BLAST on NCBI protein sequence of TCONS_00013852-protein >TCONS_00013852-protein ID=TCONS_00013852-protein|Name=TCONS_00013852-protein|organism=Clytia hemisphaerica|type=polypeptide|length=453bp LEVLIKQMMINFGKWCFGVVCFICLLVVIRCSSQRFDDNLRYDISWNGPLRun BLAST on NCBI transcript from alignment at sc0000174:531165..547551+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013852 ID=TCONS_00013852|Name=TCONS_00013852|organism=Clytia hemisphaerica|type=transcript|length=16387bp|location=Sequence derived from alignment at sc0000174:531165..547551+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000174:531165..547551+ >TCONS_00013852 ID=TCONS_00013852|Name=TCONS_00013852|organism=Clytia hemisphaerica|type=CDS|length=24516bp|location=Sequence derived from alignment at sc0000174:531165..547551+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00013852 vs. Swiss-Prot (Human)
Match: ERLEC (Endoplasmic reticulum lectin 1 OS=Homo sapiens GN=ERLEC1 PE=1 SV=1) HSP 1 Score: 306.605 bits (784), Expect = 6.771e-95 Identity = 168/453 (37.09%), Postives = 251/453 (55.41%), Query Frame = 2
Query: 104 RFDDNLRYDISWNGPLTEQTEPGS-----HHERVMITTKDNEKYQCLIPQLKTEAEDFDIDF-GPAPEVLLSDVLEATPKKCSYRLEPYWTYEVCHGQSVIQFHEEKDKDGGIKRDEYILGKMSNELLQELLKRAXXXXXXNENKKKIPTKKIEGQETPYYSMEMTDGTPCDI-NGEPRKSYVLYVCHLSANNEVISVKEMTTCEYEIIVLSSVLCANPAYIVKKEPINDIQCHALPGHPSRPNSLIEQFNEDSLYRTSSTPRSSSEQKKALPPQETKPS-----------------------NDESLNKNFLSGDYCLIGGTGWWSYEFCNGKFVQQFHVESSKAKTIIKLGYWNKQNHIKKVEEGVFVP--------KGKNHVMHYYTGGDICDLTGAPRTALVILTCIKGKG-QQLSIYMSEPHPCQYTIGVESPILCPFVEKADKNGLF 1345
+ D++ + ++W G TE + P + V++TT EKY+C++P + + E+ + D+ GP P LL + + + CSYR+E YWTYEVCHG+ + Q+HEEK+ I EY LG M L + LL ++ E +IPTK IEGQ TPYY + M +GTPC + PR S V+Y+CH + +E++SV E+TTCEYE+++L+ +LC++P Y + P+NDI C +LPG P +P +L + ++ + R R + E+ +E P+ D+ L K FLSG YC GG GWW YEFC GK V Q+H + KT + +G WN++ HI+ ++ + V H+Y GDICD+T PR V L C + +++YM EPH CQY +GVESP++C ++ AD+NGL
Sbjct: 36 QLSDDIPFRVNWPG--TEFSLPTTGVLYKEDNYVIMTTAHKEKYKCILPLVTSGDEEEEKDYKGPNPRELLEPLFKQS--SCSYRIESYWTYEVCHGKHIRQYHEEKETGQKINIHEYYLGNM---LAKNLLFEKEREAEEKEKSNEIPTKNIEGQMTPYYPVGMGNGTPCSLKQNRPRSSTVMYICHPESKHEILSVAEVTTCEYEVVILTPLLCSHPKYRFRASPVNDIFCQSLPGSPFKPLTLRQLEQQEEILRVPF--RRNKEEDLQSTKEERFPAIHKSIAIGSQPVLTVGTTHISKLTDDQLIKEFLSGSYCFRGGVGWWKYEFCYGKHVHQYHEDKDSGKTSVVVGTWNQEEHIEWAKKNTARAYHLQDDGTQTVRMVSHFYGNGDICDITDKPRQVTVKLKCKESDSPHAVTVYMLEPHSCQYILGVESPVICKILDTADENGLL 479 The following BLAST results are available for this feature:
BLAST of TCONS_00013852 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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