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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013873 ID=TCONS_00013873|Name=TCONS_00013873|organism=Clytia hemisphaerica|type=transcript|length=1817bpRun BLAST on NCBI protein sequence of TCONS_00013873-protein >TCONS_00013873-protein ID=TCONS_00013873-protein|Name=TCONS_00013873-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp MDFLSNMVQRNAEAVNHIIKPAGTAKIMSSADDISSWYEAVQLYEVNRIDRun BLAST on NCBI transcript from alignment at sc0000174:191660..209156- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013873 ID=TCONS_00013873|Name=TCONS_00013873|organism=Clytia hemisphaerica|type=transcript|length=17497bp|location=Sequence derived from alignment at sc0000174:191660..209156- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000174:191660..209156- >TCONS_00013873 ID=TCONS_00013873|Name=TCONS_00013873|organism=Clytia hemisphaerica|type=CDS|length=11988bp|location=Sequence derived from alignment at sc0000174:191660..209156- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013873 vs. Swiss-Prot (Human)
Match: NCF2 (Neutrophil cytosol factor 2 OS=Homo sapiens GN=NCF2 PE=1 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 2.934e-28 Identity = 70/230 (30.43%), Postives = 129/230 (56.09%), Query Frame = 2
Query: 254 MSSADDISSWYEAVQLYEVNRIDEAIEKFKSVKQ-NARMLLNTGCCYLRKNDLQTAGESFGQAVKNDPHQALGFFMLGLTQYFQNKLEDALKSFEKSLTLLRGNKFVDYRQLGFKFQLYACEILTNIAGTHLRLNDLAKAQEVIQQAYEQRADKKHERIINDVDRLKSKRPKLDLFYP---PKSEVFRPAKALVANVEKKDYLGASKVISTDSEEDCYACFSGIKDKVIE 931
MS + IS W E V + A++ F +V+ ++R+ N GC Y ++ A ++F +++ D H A+ +F G+ Y K + A+K +++L LRGN+ +DY+ LG +F+L+ACE+L NIA + + + KA+E + A +++ +H +I D+ K L+ P P ++FRP + VA + KKDYLG + V+++ ++D ++ F+ ++ + E
Sbjct: 1 MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKI----DKAMECVWKQKLYEPVVIPVGKLFRPNERQVAQLAKKDYLGKATVVASVVDQDSFSGFAPLQPQAAE 226 The following BLAST results are available for this feature:
BLAST of TCONS_00013873 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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