|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013906 ID=TCONS_00013906|Name=TCONS_00013906|organism=Clytia hemisphaerica|type=transcript|length=4456bpRun BLAST on NCBI protein sequence of TCONS_00013906-protein >TCONS_00013906-protein ID=TCONS_00013906-protein|Name=TCONS_00013906-protein|organism=Clytia hemisphaerica|type=polypeptide|length=782bp MATATAVVEILSDINFSKELSQTPSEQLVVVDFYAEWCGPCKYVAPILAERun BLAST on NCBI transcript from alignment at sc0000174:668410..685797- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013906 ID=TCONS_00013906|Name=TCONS_00013906|organism=Clytia hemisphaerica|type=transcript|length=17388bp|location=Sequence derived from alignment at sc0000174:668410..685797- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000174:668410..685797- >TCONS_00013906 ID=TCONS_00013906|Name=TCONS_00013906|organism=Clytia hemisphaerica|type=CDS|length=35235bp|location=Sequence derived from alignment at sc0000174:668410..685797- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013906 vs. Swiss-Prot (Human)
Match: NGLY1 (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Homo sapiens GN=NGLY1 PE=1 SV=1) HSP 1 Score: 498.819 bits (1283), Expect = 1.497e-158 Identity = 290/669 (43.35%), Postives = 388/669 (58.00%), Query Frame = 2
Query: 617 DLSKNEPSVFKETGGIILRYANNILRDPENMKYRQIRLENKIIMEKVLPTNGAFDTFFTMGFQEMDDKLFLPHGSNLEVVHQIRDALTDAFKNLDKDENNKTTPQXXXXXXXXXXXXXXXXXNTASCRSTLLESVPVPGKRKLRFNPAGLNNH-------------------KTQFFHSLSSHTNQVLLYEEEALQIIARSHIPLDELKTKAEKEYSKTKNLNS--TSSYEDCLLLEMLTWFKNDFFSWMNSPKCTRCESETKSIGM-LQPSPDDLKWGAGRVEGYQCKVCGTQVRFRRYNHPQKLLETRTGRCGEWANCFTLCCRAVGLEARYVLDWTDHVWTEVYSKSKKRWLHCDSCENSCDKPLTYEAGWGKELSYVVAFSKDEVIDVTWRYTNKFADVMKRRNKVPEKWIIDMCQSITKELQYGATEAERQEFTTRHIKEIVEFISPKGVKVEEQQGRQSGSTNWRSMRGEMGDPSKLGYSFKLSDEHKRNKRFRMRYNPVKDEYYTNTSEMIRSNEPATVEGWSNGLLAIENIHRKVEHDWKMVYLARTEGTNYANLQWRLDLKNSGFKVKRLTIDADMKCFETGQIVFNVSTD-GIFKLCNQQSKQEGFTFSTSEFKGEDEHVTITAHLSGGKGDVAWQHTQLFRTSLDVSDYIGLEIDVEL 2554
+L +N P F E ++L YA+NILR+P + KYR IR+ N ++LP GA + F MGF+E + L P +++E + +IRD L ++ D +NK+ S+ ST L + P NP+GLN H + L S+ VL+YE ALQ A + IP+ ELK K++++ S+ + L+ S ED LLLE+L WFK +FF W+N+ C++C +T+S L PS D+LKWGA VE + C C RF RYN+P+KLLETR GRCGEWANCFTLCCRAVG EARYV D+TDHVWTEVYS S++RWLHCD+CE+ CDKPL YE GWGK+LSYV+AFSKDEV+DVTWRY+ K +V+ RR KV E + D + K+ Q +E R+E R I E+VEFISPK K E GR SGS WR RGEMG K +E K +K+ + YN VKD Y + SN T+ GW NG+ +E+I RKVE DW MVYLAR EG+++A + W+ + + G KV ++I + F+TG + + + +D +L S S ++F G E V + A LS G GDVAWQHTQLFR SL+ + LEI ++
Sbjct: 19 ELCQNTPETFLEASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRD-LIAIERSSRLDGSNKS---------------HKVKSSQQPAASTQLPTTPSS-------NPSGLNQHTRNRQGQSSDPPSASTVAADSAILEVLQSNIQHVLVYENPALQEKALACIPVQELKRKSQEKLSRARKLDKGINISDEDFLLLELLHWFKEEFFHWVNNVLCSKCGGQTRSRDRSLLPSDDELKWGAKEVEDHYCDACQFSNRFPRYNNPEKLLETRCGRCGEWANCFTLCCRAVGFEARYVWDYTDHVWTEVYSPSQQRWLHCDACEDVCDKPLLYEIGWGKKLSYVIAFSKDEVVDVTWRYSCKHEEVIARRTKVKEALLRDTINGLNKQRQLFLSENRRKELLQRIIVELVEFISPKTPKPGELGGRISGSVAWRVARGEMGLQRKETLFIPCENE-KISKQLHLCYNIVKDRY------VRVSNNNQTISGWENGVWKMESIFRKVETDWHMVYLARKEGSSFAYISWKFECGSVGLKVDSISIRTSSQTFQTGTVEWKLRSDTAQVELTGDNS-----LHSYADFSGATE-VILEAELSRGDGDVAWQHTQLFRQSLNDHEENCLEIIIKF 651 The following BLAST results are available for this feature:
BLAST of TCONS_00013906 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.