TCONS_00013909 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013909
Unique NameTCONS_00013909
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013909 ID=TCONS_00013909|Name=TCONS_00013909|organism=Clytia hemisphaerica|type=transcript|length=498bp
TAACAAAACATGATATTGACATGAACTTTGAAAAGTGATGCAAACATTTC
TCAGCTAAAGCAGATCGAATGACACTGCATCTCTTGAAATGGCAGCACTG
TCAATGAAAGGTTGGCAGAGACCCGAAATGAGatttagaAAATGGGGGGC
GCTGAGGAGGGTCATCACCACAAGAAGACTTGTTTCAACATTTGGCAGCC
AACCAAGAAGCAACAACAAAGATATAAAGATCCCAATCTTGGAGAGATTG
AATAGTGGTGACGTTCTAGTAGGAGACGGAGGCATGACGTATGCATTGGA
AAAACGAGGATATGTAACGGCGGCTCAATGGACACCAGAAGCGGTGGTAG
AACACCCAGAAGCTGGTAGAGTATTCTGTCTTATAGGAAAGGGGACACTT
AAAGAGAAAGTATTGTTGTATGCAAGCCAGGGATAGAGTGCATAGCAAAC
ATCTTACCACTTGTACTAAAACACCACAAAACGCGAAGTTACAtaaca
Run BLAST on NCBI

protein sequence of TCONS_00013909-protein

>TCONS_00013909-protein ID=TCONS_00013909-protein|Name=TCONS_00013909-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MAALSMKGWQRPEMRFRKWGALRRVITTRRLVSTFGSQPRSNNKDIKIPI
LERLNSGDVLVGDGGMTYALEKRGYVTAAQWTPEAVVEHPEAGRVFCLIG
KGTLKEKVLLYASQG
Run BLAST on NCBI

transcript from alignment at sc0000174:698135..699280-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013909 ID=TCONS_00013909|Name=TCONS_00013909|organism=Clytia hemisphaerica|type=transcript|length=1146bp|location=Sequence derived from alignment at sc0000174:698135..699280- (Clytia hemisphaerica)
TAACAAAACATGATATTGACATGAACTTTGAAAAGTGATGCAAACATTTC
TCAGCTAAAGCAGATCGAATGACACTGCATCTCTTGAAATGGCAGCACTG
TCAATGAAAGGTTGGCAGAGACCCGAAATGAGGTGAGTTTTAAATATTTG
AAAAACTAGGATAAGCACCGACTTGCCTCATACTACTTAAAGGCCGGGGC
CTTTCTGTTGCTTTTCCATTTAAAGGAAAACCAACAGAAATGCAGATTTT
TGTTTATTTGATTAAAAATATCCATATGCTTGTTGCTTCTTATATGGGGG
GTACTTAGGCAAATGGAGGGTACGGTATGTGCCGCCCTTAAGGGTACCTT
TTTTGGACTTCCAAAGTCCCAGTAAGGGTCGGAAAAAAAGGAAAATTTCA
ACTCTTTACCCCCTGAAAGATCGAAATTTGGTCAAAATTGGTCGAATTAG
TCCCGCTAAGGGTCGTAAAATTCACAAAATTTTCCTTTGTTTTCTCCTTT
TTAGTCCCGGTAAGGGTCCAAGGGTCGAAAGTCGGGTGATACCTCCCTGT
CAGCTCGCAACCCTAGTACCAATCAAGCTATCCCATATTTTTTAATCTCG
CAATTGATTAAGAATGGTCACAAATTTTAGTTAGCTCGGGGCTCTGCATT
CTACTAGGTGTATGGCTTATGAGATGGGCCTTGATTCGAAGAAGGTCAAA
CTTTCGACTTTAGAAACAAATTATATAGAAAATTGAAGGGTAAGAAAAAC
ATAGCTTTGATTTATGTTATCAATTTTTAGATTTAGAAAATGGGGGGCGC
TGAGGAGGGTCATCACCACAAGAAGACTTGTTTCAACATTTGGCAGCCAA
CCAAGAAGCAACAACAAAGATATAAAGATCCCAATCTTGGAGAGATTGAA
TAGTGGTGACGTTCTAGTAGGAGACGGAGGCATGACGTATGCATTGGAAA
AACGAGGATATGTAACGGCGGCTCAATGGACACCAGAAGCGGTGGTAGAA
CACCCAGAAGCTGGTAGAGTATTCTGTCTTATAGGAAAGGGGACACTTAA
AGAGAAAGTATTGTTGTATGCAAGCCAGGGATAGAGTGCATAGCAAACAT
CTTACCACTTGTACTAAAACACCACAAAACGCGAAGTTACATAACA

Coding sequence (CDS) from alignment at sc0000174:698135..699280-

>TCONS_00013909 ID=TCONS_00013909|Name=TCONS_00013909|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0000174:698135..699280- (Clytia hemisphaerica)
ATTTAGAAAATGGGGGGCGCTGAGGAGGGTCATCACCACAAGAAGACTTG
TTTCAACATTTGGCAGCCAACCAAGAAGCAACAACAAAGATATAAAGATC
CCAATCTTGGAGAGATTGAATAGTGGTGACGTTCTAGTAGGAGACGGAGG
CATGACGTATGCATTGGAAAAACGAGGATATGTAACGGCGGCTCAATGGA
CACCAGAAGCGGTGGTAGAACACCCAGAAGCTGGTAGAGTATTCTGTCTT
ATAGGAAAGGGGACACTTAAAGAGAAAGTATTGTTGTATGCAAGCCAGGG
ATAGATGGCAGCACTGTCAATGAAAGGTTGGCAGAGACCCGAAATGAGAT
TTAGAAAATGGGGGGCGCTGAGGAGGGTCATCACCACAAGAAGACTTGTT
TCAACATTTGGCAGCCAACCAAGAAGCAACAACAAAGATATAAAGATCCC
AATCTTGGAGAGATTGAATAGTGGTGACGTTCTAGTAGGAGACGGAGGCA
TGACGTATGCATTGGAAAAACGAGGATATGTAACGGCGGCTCAATGGACA
CCAGAAGCGGTGGTAGAACACCCAGAAGCTGGTAGAGTATTCTGTCTTAT
AGGAAAGGGGACACTTAAAGAGAAAGTATTGTTGTATGCAAGCCAGGGAT
AGATGGCAGCACTGTCAATGAAAGGTTGGCAGAGACCCGAAATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007763XLOC_007763Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013909-proteinTCONS_00013909-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013909-exon-sc0000174-1575043694:699149..699280TCONS_00013909-exon-sc0000174-1575043694:699149..699280Clytia hemisphaericaexon
TCONS_00013909-exon-sc0000174-1575043694:698135..698500TCONS_00013909-exon-sc0000174-1575043694:698135..698500Clytia hemisphaericaexon
TCONS_00013909-exon-sc0000174-1510915933:699149..699280TCONS_00013909-exon-sc0000174-1510915933:699149..699280Clytia hemisphaericaexon
TCONS_00013909-exon-sc0000174-1510915933:698135..698500TCONS_00013909-exon-sc0000174-1510915933:698135..698500Clytia hemisphaericaexon
TCONS_00013909-exon-sc0000174-1491911889:699149..699280TCONS_00013909-exon-sc0000174-1491911889:699149..699280Clytia hemisphaericaexon
TCONS_00013909-exon-sc0000174-1491911889:698135..698500TCONS_00013909-exon-sc0000174-1491911889:698135..698500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:698135..699280 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12276	0	0	0	0.165549	0.523277	1.26262	1.32981	4.44826	2.56274	7.58673	5.23249	15.4307	13.4813	13.8021	23.5641	17.0488	18.9858	10.1788	7.1009	12.9374	9.20509	2.95585	4.99069	2.89965	2.23498	1.85162	1.9761	7.08523	9.71752
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003726HCY_dom
Blast
[Close]
BLAST of TCONS_00013909 vs. Swiss-Prot (Human)
Match: BHMT1 (Betaine--homocysteine S-methyltransferase 1 OS=Homo sapiens GN=BHMT PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.556e-16
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 2 
Query:  203 PRSNNKDIKIPILERLNSGDVLVGDGGMTYALEKRGYVTAAQWTPEAVVEHPEAGR 370
            P    K  K  ILERLN+G++++GDGG  +ALEKRGYV A  WTPEA VEHPEA R
Sbjct:    2 PPVGGKKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVR 57
The following BLAST results are available for this feature:
BLAST of TCONS_00013909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BHMT12.556e-1662.50Betaine--homocysteine S-methyltransferase 1 OS=Hom... [more]
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