TCONS_00013910 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013910
Unique NameTCONS_00013910
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013910 ID=TCONS_00013910|Name=TCONS_00013910|organism=Clytia hemisphaerica|type=transcript|length=472bp
TTTCCAGTGCCAGCGCCAACGCGATTGATTTCAATCTTTAATTCATCGTT
TAACTTCAATCCATTTCCGTGTAGCTTAAAGTCTGTACTTGGCCTAAAAT
CTAGGCAAAGTGAATATTTGGTTGTTAAAAATTCGCCCATTGTTACCCCG
TtgctatcaaaaagctttaatatTTGATCGTATGAGTTTTCAGTTAACAA
ATCTCCTGAATACAACTGATTTGGATGACCTGAATATTGCACTTTGACTT
TTGTCACGTCCAGATTTTTAAAGGTGTCGTTTCGCCTAAACTCTTTCCTA
TCATCGGGATCAATAGCCAAAATTAAGATATATGACAATCTATCCACATC
GATATTTACCGGTAAATTGACAATGGTGTCAGTTTTCTTGATTGTTTTTG
TTGTATATCTCATAATGTGTCTGACAGGCACAATCATTCGACTATACTTT
GCCATGACTGACTGACTCAAAT
Run BLAST on NCBI

protein sequence of TCONS_00013910-protein

>TCONS_00013910-protein ID=TCONS_00013910-protein|Name=TCONS_00013910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
LSQSVMAKYSRMIVPVRHIMRYTTKTIKKTDTIVNLPVNIDVDRLSYILI
LAIDPDDRKEFRRNDTFKNLDVTKVKVQYSGHPNQLYSGDLLTENSYDQI
LKLFDSNGVTMGEFLTTKYSLCLDFRPSTDFKLHGNGLKLNDELKIEINR
VGAGTG
Run BLAST on NCBI

transcript from alignment at sc0000174:3057..3528

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013910 ID=TCONS_00013910|Name=TCONS_00013910|organism=Clytia hemisphaerica|type=transcript|length=472bp|location=Sequence derived from alignment at sc0000174:3057..3528 (Clytia hemisphaerica)
ATTTGAGTCAGTCAGTCATGGCAAAGTATAGTCGAATGATTGTGCCTGTC
AGACACATTATGAGATATACAACAAAAACAATCAAGAAAACTGACACCAT
TGTCAATTTACCGGTAAATATCGATGTGGATAGATTGTCATATATCTTAA
TTTTGGCTATTGATCCCGATGATAGGAAAGAGTTTAGGCGAAACGACACC
TTTAAAAATCTGGACGTGACAAAAGTCAAAGTGCAATATTCAGGTCATCC
AAATCAGTTGTATTCAGGAGATTTGTTAACTGAAAACTCATACGATCAAa
tattaaagctttttgatagcaACGGGGTAACAATGGGCGAATTTTTAACA
ACCAAATATTCACTTTGCCTAGATTTTAGGCCAAGTACAGACTTTAAGCT
ACACGGAAATGGATTGAAGTTAAACGATGAATTAAAGATTGAAATCAATC
GCGTTGGCGCTGGCACTGGAAA

Coding sequence (CDS) from alignment at sc0000174:3057..3528

>TCONS_00013910 ID=TCONS_00013910|Name=TCONS_00013910|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at sc0000174:3057..3528 (Clytia hemisphaerica)
TTGAGTCAGTCAGTCATGGCAAAGTATAGTCGAATGATTGTGCCTGTCAG
ACACATTATGAGATATACAACAAAAACAATCAAGAAAACTGACACCATTG
TCAATTTACCGGTAAATATCGATGTGGATAGATTGTCATATATCTTAATT
TTGGCTATTGATCCCGATGATAGGAAAGAGTTTAGGCGAAACGACACCTT
TAAAAATCTGGACGTGACAAAAGTCAAAGTGCAATATTCAGGTCATCCAA
ATCAGTTGTATTCAGGAGATTTGTTAACTGAAAACTCATACGATCAAata
ttaaagctttttgatagcaACGGGGTAACAATGGGCGAATTTTTAACAAC
CAAATATTCACTTTGCCTAGATTTTAGGCCAAGTACAGACTTTAAGCTAC
ACGGAAATGGATTGAAGTTAAACGATGAATTAAAGATTGAAATCAATCGC
GTTGGCGCTGGCACTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007764XLOC_007764Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013910-proteinTCONS_00013910-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013910-exon-sc0000174-1491911889:3057..3528TCONS_00013910-exon-sc0000174-1491911889:3057..3528Clytia hemisphaericaexon
TCONS_00013910-exon-sc0000174-1510915933:3057..3528TCONS_00013910-exon-sc0000174-1510915933:3057..3528Clytia hemisphaericaexon
TCONS_00013910-exon-sc0000174-1575043694:3057..3528TCONS_00013910-exon-sc0000174-1575043694:3057..3528Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:3057..3528 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.134896	0.131545	0	0	0.727661	0.862511	0	0.324727	0.113675	0	0.136668	0.0898402	0	0.0931703	0	0.164404	0	0.207589	0	0	0.782553	0.381702	0.15467	0.140617	0	1.03407	2.21964	0.789619	0	0.152546
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013910 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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