TCONS_00013949 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013949
Unique NameTCONS_00013949
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length423

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013949 ID=TCONS_00013949|Name=TCONS_00013949|organism=Clytia hemisphaerica|type=transcript|length=423bp
aattttagtttatacaaactaaatcccgtattattattattagtattggt
attattagtattacatgcattataaacgacccCAGTCCAGTCAGATCGTA
ATAAATGAGTTGTAGTGGTTGCAGTCAGGCGAAGTGTCGAGTGGCTTAAC
TAAATAAACTCagaaattttaatttctaaacttctgatttttttatgttt
aattttCTAGGACCACTATAGTTTGGAGTTTGGCCAGCTCGAAGAAGATT
ATTTTGGATTTGAGTGCTTCGGGTTGGCTTAGAATTATATAAATCAGAAG
ATGGCAGCAGTTTTAAAAATATGACGAAATGTCGCCATAAATGCATTGCT
CTTCTTCTATACTCAGTGGaagattttgtttacaaaaCTCAAGAAAGATC
AGTATTGTTTGTTTGCAACTtgg
Run BLAST on NCBI

transcript from alignment at sc0000174:650655..651077

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013949 ID=TCONS_00013949|Name=TCONS_00013949|organism=Clytia hemisphaerica|type=transcript|length=423bp|location=Sequence derived from alignment at sc0000174:650655..651077 (Clytia hemisphaerica)
ccaAGTTGCAAACAAACAATACTGATCTTTCTTGAGttttgtaaacaaaa
tcttCCACTGAGTATAGAAGAAGAGCAATGCATTTATGGCGACATTTCGT
CATATTTTTAAAACTGCTGCCATCTTCTGATTTATATAATTCTAAGCCAA
CCCGAAGCACTCAAATCCAAAATAATCTTCTTCGAGCTGGCCAAACTCCA
AACTATAGTGGTCCTAGaaaattaaacataaaaaaatcagaagtttagaa
attaaaatttctGAGTTTATTTAGTTAAGCCACTCGACACTTCGCCTGAC
TGCAACCACTACAACTCATTTATTACGATCTGACTGGACTGgggtcgttt
ataatgcatgtaatactaataataccaatactaataataataatacggga
tttagtttgtataaactaaaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007803XLOC_007803Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013949-exon-sc0000174-1491911889:650655..651077TCONS_00013949-exon-sc0000174-1491911889:650655..651077Clytia hemisphaericaexon
TCONS_00013949-exon-sc0000174-1510915933:650655..651077TCONS_00013949-exon-sc0000174-1510915933:650655..651077Clytia hemisphaericaexon
TCONS_00013949-exon-sc0000174-1575043694:650655..651077TCONS_00013949-exon-sc0000174-1575043694:650655..651077Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:650655..651077 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.667287	1.13166	0.393646	0.385535	0	0	0.215955	0.202582	0.421668	0	0	0.441709	0.221408	0.114743	0.189318	0.707168	0.497813	0.255121	1.58609	0.368828	0.646547	0.938388	0.57385	0.691398	0.722152	0.318698	0.457025	0.242605	0.189102	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top