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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013951 ID=TCONS_00013951|Name=TCONS_00013951|organism=Clytia hemisphaerica|type=transcript|length=591bp
gtttattaggcacctgagagtacaCAGGTTCATGGTTGATCGAGATAAAA
GCTGGTGTTTATTGTTTCTCacttattttttcagatttgcaACCTATCAA
ACGTGGTACTTTCTACAAAGAAATCGATCCCTTCAACTATCTTGATTCCA
GGATTCGACAACTAACGTGTTGGTATCACCTAACGTTTCGGTATCATCTA
CGATTAATCCCTCGTCGTGGATTGTTTACCACCTATTCATTCAGCCAAAG
CCAAAGCCTTTTACTGTCTAATTTATTTAATTCATAATTTATTATAATTG
TTTGAATATAAATTGAAATCTCTACGAAATTTCTGTTGCATTTTACATCC
CTAATACACCGTTTAATAAGATGATATCTATCGAAGCTTATCGGATTTCG
ATCGGCAACTTTGATTCTACCAGGCAATTTAACCTTCGTTCTATATATAG
AAAATTAAGTAACAGCTCCCCAAATAGTAATGAAATTTCCCCATTTCTAA
AACCCCTCCCATTTTTAGCAGTTATTTTATTCTGTTCCATTATACTAGTT
CAGTCGGGTGATATAGAAACTAATCCAGGCCCTGTTACGAT Run BLAST on NCBI transcript from alignment at sc0000175:772..3883+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013951 ID=TCONS_00013951|Name=TCONS_00013951|organism=Clytia hemisphaerica|type=transcript|length=3112bp|location=Sequence derived from alignment at sc0000175:772..3883+ (Clytia hemisphaerica)
gtttattaggcacctgagagtacaCAGGTTCATGGTTGATCGAGATAAAA
GCTGGTGTTTATTGTTTCTCacttattttttcagatttgcaACCTATCAA
ACGTGGTACTTTCTACAAAGAAATCGATCCCTTCAACTATCTTGATTCCA
GGTGAGTAGCAATGAGAAATACCTTANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNaaagatatagcatcttgaaggccaaccagtatttt
ggagccctagaatcagcattgacaaaaccgaaaattctaaatatgagaaa
aagcaaaatatcTTGGAATCCTATTCCTATCACATTGAGCTAATAGTTTA
TAACACAAAATTAACATTGtatatcaaaaattttgctgaatcagcaaaaa
cggcaaattctgtcattttatttgcaaaatataggagaaaaatatcttta
aagcttaacattttcagtttcaattaagctttttttctaaaattttcaca
gcttattccatacatgaatggaactcttttcaaaagagatttgttttcaa
aaacttgattaagacgttaataaatcaaaattgtcattttgaaaatttct
aaattttcagtttggactttgcaatatcgaaaatcttgaaatatttcata
aaaatcataaattttacacccANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNatcaaaattgtcattttgaaaatttcttaattttcagttt
ggactttgcaatatcaaaaatcttgaaatatttcataaaaaaaataaatt
ttacattcatcgggtcgtaaatttaagggaaaacacaaatatgttcatag
tttttccccttatttccactgggcttaataatttgattttaactacacct
ccgttttgggggccccaaacctgcattttgacaaccaggggtatactgta
aaaattttatcaaacagatttatgtccaaaaccctctaaatcatatttga
aaaactatggtcaaaattttgtattcatatcttaaagctatcttgagaaa
tcgctaaaatttcaaacctccgttttgggggccattagaaaaaagctacc
catctttaagcgattgaaaaatattgttgaaattggaaattttgaaaaag
aacttccaggaaataaagatgagatgttaaaggttttcatgcagcaaaaa
tttttgtaaaatatcttttcctctagatttgagagaaatttcaaatttga
tcgcagttttgggggccacatactgtatagAAATTTCTACGATCGAAGCC
TTAAAAATAGAGGGATAATCCTGTTAATCAACACAGATGTGTGCTAGCTT
CTAAAACAAAACGCCAACTATGACGCCACACGTACAAATCTTTAAAGGGA
TATTATAACACATTGACTGAAGATCTTTTGATGTAACATAGCTCTTTCGA
AAGCTCTcgttataaattttttaaaacNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTTCATTATGTaatttctgctggactacattaTTATTCAACA
GAAcgtcctttttgaaaaaatatctattTTGTGACTATGTTTTAATAATA
GCAGAGTCTGTTTCCAATGCCCATAATAATGACTTAAGATTTAATCAATC
TTTTGCTCAAATACACAATACTATCAATTTTTTCGTGAAATACTGCCATA
CTGTTAGAAAAAAGCTTGGCCCTGGTACTAGCTCTTGGAGATCCcttttg
aaatttggtataCCTTTGCATTATGTGATTATGTTAAAAGTCGCAAAGTT
TcatgagatttaaaaaaaatttaagggaattataagcaaaaaactgACAG
GGTGGTGTAACCCCCCCCCTCCGATATAAATActaaattttattcaattt
gTTACTCTTCCTTTATTTTTAGGATTCGACAACTAACGTGTTGGTATCAC
CTAACGTTTCGGTATCATCTACGATTAATCCCTCGTCGTGGATTGTTTAC
CACCTATTCATTCAGCCAAAGCCAAAGCCTTTTACTGTCTAATTTATTTA
ATTCATAATTTATTATAATTGTTTGAATATAAATTGAAATCTCTACGAAA
TTTCTGTTGCATTTTACATCCCTAATACACCGTTTAATAAGATGATATCT
ATCGAAGCTTATCGGATTTCGATCGGCAACTTTGATTCTACCAGGCAATT
TAACCTTCGTTCTATATATAGAAAATTAAGTAACAGCTCCCCAAATAGTA
ATGAAATTTCCCCATTTCTAAAACCCCTCCCATTTTTAGCAGTTATTTTA
TTCTGTTCCATTATACTAGTTCAGTCGGGTGATATAGAAACTAATCCAGG
CCCTGTTACGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013951-exon-sc0000175-1491911889:772..922 | TCONS_00013951-exon-sc0000175-1491911889:772..922 | Clytia hemisphaerica | exon |
| TCONS_00013951-exon-sc0000175-1510915933:772..922 | TCONS_00013951-exon-sc0000175-1510915933:772..922 | Clytia hemisphaerica | exon |
| TCONS_00013951-exon-sc0000175-1575043694:772..922 | TCONS_00013951-exon-sc0000175-1575043694:772..922 | Clytia hemisphaerica | exon |
| TCONS_00013951-exon-sc0000175-1491911889:3444..3883 | TCONS_00013951-exon-sc0000175-1491911889:3444..3883 | Clytia hemisphaerica | exon |
| TCONS_00013951-exon-sc0000175-1510915933:3444..3883 | TCONS_00013951-exon-sc0000175-1510915933:3444..3883 | Clytia hemisphaerica | exon |
| TCONS_00013951-exon-sc0000175-1575043694:3444..3883 | TCONS_00013951-exon-sc0000175-1575043694:3444..3883 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000175 | supercontig | sc0000175:772..3883 + |
Blast
The following BLAST results are available for this feature:
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