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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013987 ID=TCONS_00013987|Name=TCONS_00013987|organism=Clytia hemisphaerica|type=transcript|length=4611bpRun BLAST on NCBI protein sequence of TCONS_00013987-protein >TCONS_00013987-protein ID=TCONS_00013987-protein|Name=TCONS_00013987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1484bp MAAPGDDMSVQVALRIRPQSAAEKIDMCHVCTSVTPGHPQVILGKDKAFTRun BLAST on NCBI transcript from alignment at sc0000175:162898..208215- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013987 ID=TCONS_00013987|Name=TCONS_00013987|organism=Clytia hemisphaerica|type=transcript|length=45318bp|location=Sequence derived from alignment at sc0000175:162898..208215- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000175:162898..208215- >TCONS_00013987 ID=TCONS_00013987|Name=TCONS_00013987|organism=Clytia hemisphaerica|type=CDS|length=142464bp|location=Sequence derived from alignment at sc0000175:162898..208215- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013987 vs. Swiss-Prot (Human)
Match: KI21B (Kinesin-like protein KIF21B OS=Homo sapiens GN=KIF21B PE=1 SV=2) HSP 1 Score: 808.905 bits (2088), Expect = 0.000e+0 Identity = 501/1110 (45.14%), Postives = 705/1110 (63.51%), Query Frame = 1
Query: 160 MAAPGDDMSVQVALRIRPQSAAEKIDMCHVCTSVTPGHPQVILGKDKAFTYDHVFDIESRQPDIYDNIARPLIEGCFEGYNATILAYGQTGSGKTFTMGTSFDVGIPETAIGIIPRAALHLFQGIKERRDKAESEGKPLPDIKVSAQFLELYNEEIVDLLDIESKG-----KKQIRVHEDHDGNIYLTGVSSKGVVSAEDCMGLLEEGAIXXXXXXXXXXXXXXXXHAIFTIFVKHHRLA--------ASDGTEDGDS-SEEFEVLNAKFNFVDLAGSERLKRTGATGDRAREGISINQGLLSLGNVISALGDRSKKGSHVPYRDSKLTRLLQDSLGGNSRTLMIACVSPSDRDFMETLNTLKYANRARNIKNKVVVNQDKASKQIALLRQEIQQLSLELTEYKQGKRAV-DGGNEYMTDTYHELEMLRTENETLRMRVKALQKNIDSQNIQLTELKVTSA--LAHVTSDDKVGLEDIVKKYENEIQKLSNKLLESEAM--------STAAVRRAQTVSRMAMSP---GNTTNDDDNIHSIINEAKQDLKREXXXXXXXXXXXXTLEENDEEEPKLNGTEKLTSPESEEL---SQTTEDNNSEKQQXXXXXXXXXXXXVMXXXXXXXXXXXXXXXXXMSNTDSDDEVEEMLNKSLKDEEELQDNINDLNTDITIKQKLIDELEHSQQRLTALKHQYEQKMSLLHNKIKETEDERDKVLKNIGTVDVVAKEKSDEVRKRYEKKLQTMQKELSKLQNAKREHQRLQKTKEQNEQQLKGLRNEMNDMKKMKVKLMRQMRDEVARNKKMESKLNRQMESVLKENRKKEVELKRMKDEKKQRDLVLKRKQEELKAMRKQAKPVSGNVAARRG-RPAXXXXXXXXXXXXXXXETFVVDERTKQGMVTPTNKRKN------IASPGRGLR-----------SPAVSKKAKQKWEVLDRKITELTIRMKNVAQMENDMERWLADRERVSKQLEGVRKRKEGIEKNANNQDENVLRELQNQYEGLEAHLDYIQENITESQGTIMXXXXXXXXXNPNE---IIKACTLSETKYLLEHFYSKSIETAQELANKDAAYKEIQIKLEAMEQHCEVQQQLLQHA 3333
MA GD V+VA+RIRPQ + EKI+ CH+CTSVTPG PQV+LGKDKAFTYD VFD+++ Q IY LIEGCFEGYNAT+LAYGQTG+GKT+TMGT FD+ E GIIPRA HLF GI ER+ +A+ +G P+ KVSAQFLELYNEEI+DL D + I++HED +G IY TGV+S+ + S E+ + L++GA+SRTTA+T MN SSRSHAIFTI + R+ A G DG S E+E L AKF+FVDLAGSERLKRTGATG+RA+EGISIN GLL+LGNVISALGD+SKK HVPYRDSKLTRLLQDSLGGNS+T+MIACVSPSDRDFMETLNTLKYANRARNIKNKVVVNQDK S+QI+ LR EI +L +EL EYK GKR + + G E +D + E ML+ EN LR+RVKA+Q+ ID+ N ++T+L A L D + +++ Y EI++L KLLESEAM S A+ R ++ +P G+ + ++ +I AKQDL E K ++ SPE E ++ ++N+ E ++ E +E D+ E EE E+E+E+ S DSD + EE E Q ++ DL +I IKQKLIDELE+SQ+RL LKHQYE+K+ LL NKI++T+ ERD+VL+N+ T++ +EK+++++ YEK+L+ M ++L KLQ A++EH RL K + + E++LK L+ E+ +MKK KV LM+QMR+E R + +E+K NR++ + KE R++E +++ ++ +K+Q+++VL+RK +E+ A+R+ AKP+S VA R G +P L + ++ +E R+ +V N++ N A G R S + SK A+ KW+ L+R+I ++ ++ + +E DMER + RE + E +R+++E ++ + ++E L+EL + E L A++DYI + IT+ Q TI+ LEE E L+ + +I +C+L+E + LL++F SI+ ++A K+A + ++ +L + Q LL A
Sbjct: 1 MAGQGD-CCVKVAVRIRPQLSKEKIEGCHICTSVTPGEPQVLLGKDKAFTYDFVFDLDTWQEQIYSTCVSKLIEGCFEGYNATVLAYGQTGAGKTYTMGTGFDMATSEEEQGIIPRAIAHLFGGIAERKRRAQEQGVAGPEFKVSAQFLELYNEEILDLFDSTRDPDTRHRRSNIKIHEDANGGIYTTGVTSRLIHSQEELIQCLKQGALSRTTASTQMNVQSSRSHAIFTIHLCQMRMCTQPDLVNEAVTGLPDGTPPSSEYETLTAKFHFVDLAGSERLKRTGATGERAKEGISINCGLLALGNVISALGDQSKKVVHVPYRDSKLTRLLQDSLGGNSQTIMIACVSPSDRDFMETLNTLKYANRARNIKNKVVVNQDKTSQQISALRAEIARLQMELMEYKAGKRVIGEDGAEGYSDLFRENAMLQKENGALRLRVKAMQEAIDAINNRVTQLMSQEANLLLAKAGDGNEAIGALIQNYIREIEELRTKLLESEAMNESLRRSLSRASARSPYSLGASPAAPAFGGSPASSMEDASEVIRRAKQDL---------------------ERLKKKEVRQRRKSPEKEAFKKRAKLQQENSEETDENEAEEEEEERDESGCEEEEGREDEDEDSGSEESLVDSDSDPEE-------KEVNFQADLADLTCEIEIKQKLIDELENSQRRLQTLKHQYEEKLILLQNKIRDTQLERDRVLQNLSTMECYTEEKANKIKADYEKRLREMNRDLQKLQAAQKEHARLLKNQSRYERELKKLQAEVAEMKKAKVALMKQMREEQQRRRLVETKRNREIAQLKKEQRRQEFQIRALESQKRQQEMVLRRKTQEVSALRRLAKPMSERVAGRAGLKPPMLDSGAEVSASTTSSEA-ESGARSVSSIVRQWNRKINHFLGDHPAPTVNGTRPARKKFQKKGASQSFSKAARLKWQSLERRIIDIVMQRMTIVNLEADMERLIKKREELFLLQEALRRKRERLQAES-PEEEKGLQELAEEIEVLAANIDYINDGITDCQATIVQLEETKEELDSTDTSVVISSCSLAEARLLLDNFLKASIDKGLQVAQKEAQIRLLEGRLRQTDMAGSSQNHLLLDA 1079 HSP 2 Score: 158.688 bits (400), Expect = 1.039e-38 Identity = 97/275 (35.27%), Postives = 146/275 (53.09%), Query Frame = 1
Query: 3925 RKQGSSKNSPLMERKS--NAEPTTSSDM-------------DSSDVFKRLTSN-------------LPPESDPDLGQILPSKASPG-KPEVLTCKYTATGHSSAILSLDVQDYLMMTGSKDRTAKVWDLNTNEEIASFAQHKRDVNVVKFVPNSRLALTVSHTTVKVWDLRQQA-VVKTL--SGSLL----------QSITDA----TISDIGINSAGSVIYLAYGNSVKMIDMKTYSTLGKLTGHTGAVTCLLVANTGHNHDNVITGSKDHYIK 4611
R+ +++ SPL RKS +P S+D+ + +VF RLTSN S+ G I P + G + L C A GH+ IL LD D L+ TGSKDR+ K+W+L T +EIA+ H +V +K+ +S L +VS + +KVWD+R A ++TL SG ++ ++IT A I+ I ++ +G+++Y A GN+V++ ++ + +GKLTGH G V CL V T HD V+TGSKDHY+K
Sbjct: 1207 RQSRATETSPLTRRKSYDRGQPIRSTDVGFTPPSSPPTRPRNDRNVFSRLTSNQSQGSALDKSDDSDSSLSEVLRGIISPVGGAKGARTAPLQCVSMAEGHTKPILCLDATDELLFTGSKDRSCKMWNLVTGQEIAALKGHPNNVVSIKYCSHSGLVFSVSTSYIKVWDIRDSAKCIRTLTSSGQVISGDACAATSTRAITSAQGEHQINQIALSPSGTMLYAASGNAVRIWELSRFQPVGKLTGHIGPVMCLTVTQTASQHDLVVTGSKDHYVK 1481 The following BLAST results are available for this feature:
BLAST of TCONS_00013987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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