TCONS_00014005 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014005
Unique NameTCONS_00014005
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1876

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014005 ID=TCONS_00014005|Name=TCONS_00014005|organism=Clytia hemisphaerica|type=transcript|length=1876bp
taatgacacatggttcacgcaatgtttacattttactacttttatgtcct
tTAATATACCCTAGACACAATTTCTCAATCCCAACTAAGCAAAACCTTTG
ATCGCAGTTTGTAGCACTACTCGAAATTGGTTAAACAAAATCCATactga
aaattttgttgaattagAAATTGACCCACATCGAGTAGTGCTATCATTAG
GTACCTTTTCCAAAATCTCTGGTCAAAGATGACAGGTACATAGATTTGTA
AAAGCCCGAAGGGATACAtgtcgtgcttttgctgaaaagtgtaccgaagt
taggtaggaaatcctacctaagtcacatGACATTActatagaatttcagc
gcttgacctatcagaagcttcgcaggtttttgaaaacaatagcaacagta
gttttccgatattcacttttttttgcctgcgatggcttaaacatctagct
cttcgggttttataaatctatggacaGGTACagtatagcttggtccagga
tATAAAACGTAGCACGCGTAAATTCAAAATTCGGCTttattcaaaacata
aaaatccaTAGCACAAAACATGGGTTGAAGTTACAGCCAACAAACCAATA
GTTCAACTCTCAAGTAAAACCATCAACATTTTTCAGCACTGGCCTTATTT
TTCATACAGAAAAATAGCGAAGAAAAGACCAGAGTAGTCGAAGTATTACG
TAAAGGATATCAAGAATTCTACGTATTGACGTAAGGAACGTTATCCCTCT
ttcagcttttttcacatgtacgtaaaatatTACTTAAGTGTTAAGACctt
ccctaagcttacgtagtgttttaaggccttatgtggagtttgcttacgtt
caaaaagttttgaacggaaggaaaagtcacgtaagaccctcttaatcaGC
AAAAACTCTACATAATATCGGGGAAATTCCCATAAGACATTCTTACGAAC
GAACTTccgtaaggtctaaagtaaaattttacgtacatgtgaaaaagcTT
TACGGAAAATATCCCAATCGCACAACCAGTTGCCCAAAGCCCGACCTGCA
GGATATGAAGCTGAGTGAAAGATTAAAATCCAAATAGAATAATATCTGGT
TAAAATCAACGCTTGGTTTTATTGAGTGTTTCCGCATAGAGTATCTCTTC
ATAACGCAAGGGTTAAGAATATGTTGTATCTTTTTTCCGAGTCTCCATAA
TTCAAACACAAACGAGGAACACAAATTTTTTCGAGTTACGGAAATTTTGA
GTCATTGACAGAGTATTCTCCATGCACTAAACGTTGATGAATAAATCTGT
AAAGGGGATATTTGGTTGAATTTGACATTGCAAATCCATAATCACCATTC
GTAGTCGATGTATAGATCCAGAGTATTTGCCAGGCGTTAAAACGTCGGTA
AATTATTTGTGTATAGGGTCTTATGCTTGGATGTCAAGAGTCTTAATGAA
AATCGATCTCTGACGTAACATCAAGTGATCTAACAAATGCTCTATTAAAA
CGGTTATCATCAGATAGAAATCTTCCATAAACGCAAAAACTGAACGAACa
gcaacttttcaaaacatattaTCACCTATTAAACGGTTTATCTAGGACCA
CCACACCGGCGTAACTACGACCAGTACTCATTTGCGACGGTAAAAGGTCC
CATTTATCCGTCCTAGACGAGTAAACTTCAACCGTTGAAAGATTTATCGA
TCCGTCATCACCACCGACAACATATAAAAGTCCGTCAATTGAAGCGACGC
CGGCATTCCGACGTGCCAAAGACATGTCGGATACTATAGTCCATTTGTTA
GTGTCGGGATTATAATATTCGACGCTCTTTCGAACGAGTGGGCCGTCGTG
CCCTCCGACGGCGTATAAGAAATCAC
Run BLAST on NCBI

transcript from alignment at sc0000175:473617..476124-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014005 ID=TCONS_00014005|Name=TCONS_00014005|organism=Clytia hemisphaerica|type=transcript|length=2508bp|location=Sequence derived from alignment at sc0000175:473617..476124- (Clytia hemisphaerica)
TAATGACACATGGTTCACGCAATGTTTACATTTTACTACTTTTATGTCCT
TTAATATACCCTAGACACAATTTCTCAATCCCAACTAAGCAAAACCTTTG
ATCGCAGTTTGTAGCACTACTCGAAATTGGTTAAACAAAATCCATACTGA
AAATTTTGTTGAATTAGAAATTGACCCACATCGAGTAGTGCTATCATTAG
GTACCTTTTCCAAAATCTCTGGTCAAAGATGACAGGTACATAGATTTGTA
AAAGCCCGAAGGGATACATGTCGTGCTTTTGCTGAAAAGTGTACCGAAGT
TAGGTAGGAAATCCTACCTAAGTCACATGACATTACTATAGAATTTCAGC
GCTTGACCTATCAGAAGCTTCGCAGGTTTTTGAAAACAATAGCAACAGTA
GTTTTCCGATATTCACTTTTTTTTGCCTGCGATGGCTTAAACATCTAGCT
CTTCGGGTTTTATAAATCTATGGACAGGTACAGTATAGCTTGGTCCAGGA
TATAAAACGTAGCACGCGTAAATTCAAAATTCGGCTTTATTCAAAACATA
AAAATCCATAGCACAAAACATGGGTTGAAGTTACAGCCAACAAACCAATA
GTTCAACTCTCAAGTAAAACCATCAACATTTTTCAGCACTGGCCTTATTT
TTCATACAGAAAAATAGCGAAGAAAAGACCAGAGTAGTCGAAGTATTACG
TAAAGGATATCAAGAATTCTACGTATTGACGTAAGGAACGTTATCCCTCT
TTCAGCTTTTTTCACATGTACGTAAAATATTACTTAAGTGTTAAGACCTT
CCCTAAGCTTACGTAGTGTTTTAAGGCCTTATGTGGAGTTTGCTTACGTT
CAAAAAGTTTTGAACGGAAGGAAAAGTCACGTAAGACCCTCTTAATCAGC
AAAAACTCTACATAATATCGGGGAAATTCCCATAAGACATTCTTACGAAC
GAACTTCCGTAAGGTCTAAAGTAAAATTTTACGTACATGTGAAAAAGCTT
TACGGAAAATATCCCAATCGCACAACCAGTTGCCCAAAGCCCGACCTGCA
GGATATGAAGCTGAGTGAAAGATTAAAATCCAAATAGAATAATATCTGGT
TAAAATCAACGCTTGGTTTTATTGAGTGTTTCCGCATAGAGTATCTCTTC
ATAACGCAAGGGTTAAGAATATGTTGTATCTTTTTTCCGAGTCTCCATAA
TTCAAACACAAACGAGGAACACAAATTTTTTCGAGTTACGGAAATTTTGA
GTCATTGACAGAGTATTCTCCATGCACTAAACGTTGATGAATAAATCTGT
AAAGGGGATATTTGGTTGAATTTGACATTGCAAATCCATAATCACCATTC
GTAGTCGATGTATAGATCCAGAGTATTTGCCAGGCGTTAAAACGTCGGTA
AATTATTTGTGTATAGGGTCTTATGCTTGGATGTCAAGAGTCTTAATGAA
AATCGATCTCTGACGTAACATCAAGTGATCTAACAAATGCTCCATTAAAA
CGGTTACCTCCGGATACGAGTCTTGATGAAAACCATCTCTGACGTAACAT
CAAGTGATCTAACAAATGCTCTATTAAAACGGTTACCTCCGGATACGAGT
CTTGATGAAAACCATCTCTGACGTAACATCAAGTGATCTAACAAATGCTC
TATTAAAACGGTTACCTCCGGATACGAGTCTTGATGAAAACCATCTCCGA
CGTAACATCAAGTGATCTAACAAATGCTCTATTAAAACGGTTACCTCCGG
ATACGAGTCTTGATAAAAACAATCTCTGACGTAACATCAAGTGATCTAAC
AAATGCTCTATTAAAACGGTTACCTCCGGATACGAGTCTTGATGAAAACC
ATCTCTGACGTAACATCAAGTGATCTAACAAATGCTCTATTAAAACGGTT
ACCTCCGGATACGAGTCTTGATGAAAACCATCTCTGACGTAACATCAAGT
GATCTAACAAATGCTCTATTAAAACGGTTACCTCCGGATACGAGTCTTGA
TAAAAACCATCTCTGACGTAACATCAAGTGATCTAACAAATGCTCTATTA
AAACGGTTACCTCCGGATACGAGTCTTGATAAAAACCATCTCTGACGTAA
CATCAAGTGATCTAACAAATGCTCTATTAAAACGGTTATCATCAGATAGA
AATCTTCCATAAACGCAAAAACTGAACGAACAGCAACTTTTCAAAACATA
TTATCACCTATTAAACGGTTTATCTAGGACCACCACACCGGCGTAACTAC
GACCAGTACTCATTTGCGACGGTAAAAGGTCCCATTTATCCGTCCTAGAC
GAGTAAACTTCAACCGTTGAAAGATTTATCGATCCGTCATCACCACCGAC
AACATATAAAAGTCCGTCAATTGAAGCGACGCCGGCATTCCGACGTGCCA
AAGACATGTCGGATACTATAGTCCATTTGTTAGTGTCGGGATTATAATAT
TCGACGCTCTTTCGAACGAGTGGGCCGTCGTGCCCTCCGACGGCGTATAA
GAAATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007824XLOC_007824Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014005-exon-sc0000175-1575043694:474656..476124TCONS_00014005-exon-sc0000175-1575043694:474656..476124Clytia hemisphaericaexon
TCONS_00014005-exon-sc0000175-1575043694:473617..474023TCONS_00014005-exon-sc0000175-1575043694:473617..474023Clytia hemisphaericaexon
TCONS_00014005-exon-sc0000175-1510915933:474656..476124TCONS_00014005-exon-sc0000175-1510915933:474656..476124Clytia hemisphaericaexon
TCONS_00014005-exon-sc0000175-1510915933:473617..474023TCONS_00014005-exon-sc0000175-1510915933:473617..474023Clytia hemisphaericaexon
TCONS_00014005-exon-sc0000175-1491911889:474656..476124TCONS_00014005-exon-sc0000175-1491911889:474656..476124Clytia hemisphaericaexon
TCONS_00014005-exon-sc0000175-1491911889:473617..474023TCONS_00014005-exon-sc0000175-1491911889:473617..474023Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000175supercontigsc0000175:473617..476124 -
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006652Kelch_1
IPR015915Kelch-typ_b-propeller
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00014005 vs. Swiss-Prot (Human)
Match: KLHL2 (Kelch-like protein 2 OS=Homo sapiens GN=KLHL2 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 7.751e-28
Identity = 67/98 (68.37%), Postives = 81/98 (82.65%), Query Frame = -3 
Query: 1581 DFLYAVGGHDGPLVRKSVEYYNPDTNKWTIVSDMSLARRNAGVASIXXXXXXXXXXXGSINLSTVEVYSSRTDKWDLLPSQMSTGRSYAGVVVLDKPF 1874
            + LYAVGGHDGPLVRKSVE Y+P TN W  V+DM++ RRNAGV +++GLLYVVGGDDGS NL++VE Y+  TDKW ++ S MSTGRSYAGV V+DKP 
Sbjct:  496 NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKPL 593
The following BLAST results are available for this feature:
BLAST of TCONS_00014005 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLHL27.751e-2868.37Kelch-like protein 2 OS=Homo sapiens GN=KLHL2 PE=1... [more]
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