TCONS_00014019 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014019
Unique NameTCONS_00014019
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014019 ID=TCONS_00014019|Name=TCONS_00014019|organism=Clytia hemisphaerica|type=transcript|length=603bp
TAATTCAAGAAATAGAAATTAATGATTATAATAATATAATTGTGTTTGTT
TAAATTGACCAGATAATTATTTTTCGTTCTTTACAAAAagacaacaaaaa
aaataaaatatatgttACAATAAATAACCATCTTATTGCTGTAACAAAGT
AAGATGGATCTAAAATccacaataattttttttacagttcATCTAAAATT
CAATATTCAGCGATCTTGTTTATGAGCCATCTTACCATTCCCGCTCGGCC
ATACGTCGTTGAGTGAGCGCGCGTCTTAAAAGTAGTCCGCTAGCATATTC
ATCAGAACGCTTATTAACAATACCGCATCCAGCCTTGCATCTCTTGTTGC
AATTAATGTATGCGAATGGATTATTCACATTTGTATCGTGTAGACACACA
TCAGTACAATCATTTTGACATGACGCAGATTCAGCGCCCCATTGATGAAG
TGCCATAACAGCAAATATTGTTAAAACAACTGCGACTTTCATTATTTGTT
CTGTATTTTGTATACTTTTTCTGTaataaaaattaagattaagaattttc
aagatATGTCTCCAACTTTGTCTAACCCATTGGAATCTACAAACAGAAAA
GGG
Run BLAST on NCBI

protein sequence of TCONS_00014019-protein

>TCONS_00014019-protein ID=TCONS_00014019-protein|Name=TCONS_00014019-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
PFSVCRFQWVRQSWRHILKILNLNFYYRKSIQNTEQIMKVAVVLTIFAVM
ALHQWGAESASCQNDCTDVCLHDTNVNNPFAYINCNKRCKAGCGIVNKRS
DEYASGLLLRRALTQRRMAEREW
Run BLAST on NCBI

transcript from alignment at sc0000175:261091..261693

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014019 ID=TCONS_00014019|Name=TCONS_00014019|organism=Clytia hemisphaerica|type=transcript|length=603bp|location=Sequence derived from alignment at sc0000175:261091..261693 (Clytia hemisphaerica)
CCCTTTTCTGTTTGTAGATTCCAATGGGTTAGACAAAGTTGGAGACATat
cttgaaaattcttaatcttaatttttattACAGAAAAAGTATACAAAATA
CAGAACAAATAATGAAAGTCGCAGTTGTTTTAACAATATTTGCTGTTATG
GCACTTCATCAATGGGGCGCTGAATCTGCGTCATGTCAAAATGATTGTAC
TGATGTGTGTCTACACGATACAAATGTGAATAATCCATTCGCATACATTA
ATTGCAACAAGAGATGCAAGGCTGGATGCGGTATTGTTAATAAGCGTTCT
GATGAATATGCTAGCGGACTACTTTTAAGACGCGCGCTCACTCAACGACG
TATGGCCGAGCGGGAATGGTAAGATGGCTCATAAACAAGATCGCTGAATA
TTGAATTTTAGATgaactgtaaaaaaaattattgtggATTTTAGATCCAT
CTTACTTTGTTACAGCAATAAGATGGTTATTTATTGTaacatatatttta
ttttttttgttgtctTTTTGTAAAGAACGAAAAATAATTATCTGGTCAAT
TTAAACAAACACAATTATATTATTATAATCATTAATTTCTATTTCTTGAA
TTA

Coding sequence (CDS) from alignment at sc0000175:261091..261693

>TCONS_00014019 ID=TCONS_00014019|Name=TCONS_00014019|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at sc0000175:261091..261693 (Clytia hemisphaerica)
CCCTTTTCTGTTTGTAGATTCCAATGGGTTAGACAAAGTTGGAGACATat
cttgaaaattcttaatcttaatttttattACAGAAAAAGTATACAAAATA
CAGAACAAATAATGAAAGTCGCAGTTGTTTTAACAATATTTGCTGTTATG
GCACTTCATCAATGGGGCGCTGAATCTGCGTCATGTCAAAATGATTGTAC
TGATGTGTGTCTACACGATACAAATGTGAATAATCCATTCGCATACATTA
ATTGCAACAAGAGATGCAAGGCTGGATGCGGTATTGTTAATAAGCGTTCT
GATGAATATGCTAGCGGACTACTTTTAAGACGCGCGCTCACTCAACGACG
TATGGCCGAGCGGGAATGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007838XLOC_007838Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014019-exon-sc0000175-1491911889:261091..261693TCONS_00014019-exon-sc0000175-1491911889:261091..261693Clytia hemisphaericaexon
TCONS_00014019-exon-sc0000175-1510915933:261091..261693TCONS_00014019-exon-sc0000175-1510915933:261091..261693Clytia hemisphaericaexon
TCONS_00014019-exon-sc0000175-1575043694:261091..261693TCONS_00014019-exon-sc0000175-1575043694:261091..261693Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014019-proteinTCONS_00014019-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000175supercontigsc0000175:261091..261693 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.263424	0	0	1.70003	1.05552	10.8821	11.2715	64.1179	36.7496	31.0174	62.1884	57.0715	35.6362	1.12487	1.15229	8.65235	9.90764	109.025	127.208	12.7109	12.9943	5.05895	7.32137	10.6345	10.4402	31.9786	22.7962	0.399772	0.101826
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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