TCONS_00014056 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014056
Unique NameTCONS_00014056
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014056 ID=TCONS_00014056|Name=TCONS_00014056|organism=Clytia hemisphaerica|type=transcript|length=1685bp
GActaagaagaagatgaagatctTTGCTCTTCTTTTAGTAGCGCTTGTTG
CTTTCGTTTGTGCTGAGGAGGCAGTCAATGATGTTAATGACGTTAGCAAC
GATATTGATTTGCCAGAAGAAATTGCTGCAGATTCTACTCTAAAAGAAGA
ACAGGCTGtagaagatgaagatgaagaaaataaaaGCGAACAAGATGAAG
ATCAAAATGACAATGAAGATCAAAGTAATGACGAAATAGCCGAAGATGAA
GAGAAACGTGGATTAAATAGTCCTGCAAAAGCTGCTCTTTTAAAAGCTGG
TCATTTCAAAGGTGGATACCCTGGATTTGGATACCCTGGATTTGGATATC
CTGGATTTGGATACCCTAGATTTGGTAACCCTGGATTTGGTAACCCTGGA
TTTGGTAACCCATATTATGGCAATGGTTTTGGTTATCCATATTTTCCATA
TTattacCGACCAAATTTGATTCGAGGACGTGTGATTGCACGTAGAGCCG
CTTTACCCTTTGGATGGAGAGTTTCTGTGCAAATCCGACCCTTGGGAATC
GTAAATGGTTTCTCTAGCATCTTACACGCTTCAATTGGTGGAAATAAAAA
GAACTACGGTGACAGAGTCCCCGCCATCTTTTTCCGCCCGAAATCCACCC
GATTACACATTTGCTCAGCTGTCAATGGACACCCAAACTATTGTTATGAC
TCTCATCCGATCCCACGCAACCGCTACACGAACGTTGTCATTCAACAAGT
AGAGAAACCTAATTACGGACACCTTTATTTCTATCAAATCTTCATCAATG
GTAGAAAGGTTAGAGATGTCTTGAATAAAAAACCACAAGTTTTCCGCAAC
GTTCAATATTTTGCCAGCAATCCATTCTATCAGCCAGCCATAGCTAACAT
CCGAAATTTCAGACTCACTAACACACCCAAAAGACCCATCACTGCTCTGG
TGAAGAGCAAAGTCATACAAAAAGTTCCACTTTTACCATCGACATGGAGA
ATCACATTCCAACTTCGTCCTTATGAAGCAGTGAATGGAGACTCAAGCAT
CTTGCATGCTTCAATTGGTGGTGACGCAAAGAATTACGGTGACAGAAACC
CTGCTGTTTTCTTCATTTCTAGAACAACTCGATTAAGAATCTGTTCAGCA
ATTAGTGGAAACATTAACCAGTGCTGGGATAGTCCTACTGCAATCCCATT
GAGGCGTTACAGCACAATCCTCATCCAACAAGTTCTCAGACGTACGCATG
GTTATTACAAAACCTTCTTTGAAATCTCCATCAATGGTCGACTTGTTCAT
AGAGTGATCAACAGTACACCACGCGCTTTCAAAAATGTCAGCTATTTCGC
CAGTAACCCTTTCATCCAAGCTGCTATTTGTGAcatcagaaatttcaaat
tacgTACCTTTGTCAAGAAATACTAAATAAATAAGCATATTGATAATATA
TGATTTAtataatatttgaaaagaagGTGTCGGTagttatgtattttttt
tttgcatattcTCTTAACATTCTTAACGGATTTATATTGAAAAGAACGTT
TCTTTTCCGAAAATCAATCTCCGTCCATTTTATGTCCTCAAAACATAGTC
ATTTAGAAAGTTTGATTCTGTGAAGGAAATAGATATACACgttgtctttt
tataagaacaaactatttaagaacataaggcttcg
Run BLAST on NCBI

transcript from alignment at sc0000180:76790..83147-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014056 ID=TCONS_00014056|Name=TCONS_00014056|organism=Clytia hemisphaerica|type=transcript|length=6358bp|location=Sequence derived from alignment at sc0000180:76790..83147- (Clytia hemisphaerica)
GACTAAGAAGAAGATGAAGATCTTTGCTCTTCTTTTAGTAGCGCTTGTTG
CTTTCGGTAAGTTGCTTTTGTTTGCTCTTTTACGAAAACTTCAAAAGTTC
AGAAATCTTCAGCAGCACTTATCAATGAACATTCAAGTGTATCCATCAGC
TTTAAAGTATCAGTTATACAGGCACGGCGGAACAACTGTAAAATGTGGGG
AGGCTGAAGGCTCAAAATGAGATAAAATTCGCTAGGAATTTGAGAAAATA
AATTGCATTTGTTTAAAACTGGGGAGGCTGAAATCTCCCCAGTCTCCCCG
CTTCCACCAGGCCTGTTATGAAATACCGGGTGCACCAAAAAAAAGTATAC
AGGTTTGTCGAGATATTGTGAGCTTCAGGATTTAAATTTTTTGTTCATTC
TTTTTTTATCGTATAGAGGATGCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCTGTATTCATCAAAACTTGTTAAGGAATTTGA
AAATATGGTAAAACAAGCTATTCCCATGTGGGATAATATTTTTGGAAAAG
CTGAAAAAAAGTTTTGGACAGATTTTGATGTCATGTGTGTGCTATGTGAG
AAAACTTTTGAAAAAATGGTTCACCATTCAGCTCGACTAGTTGCTCAAAG
AACTTGGGTCTGCATTGAGTTTGCTCGTCTTGGAAATGTTCATGACTTGC
AAATAAGATGGAAAAACTGTTGGCAAAATATAAATAAGAAAAAAAAGAAT
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCCTCTATACGATAAAAAAAGAATGAGCAAAAACTTTAAA
TCCTGAAGCTCACAATAACTCGACAAACCTGTATACTTTTTTTTGGTGCA
CCCGGTAGATTTACAGGAAAGGCAGAAGATTCCCCGAGTCTTTTTGAATT
TTTCGACCTTGTGATTAATTGAAAGTGTCGGCATCATTTTTTTCATAGTA
ACCAATTGCAAATTTTTGCTTTCTTTTTGAAGTTTGTGCTGAGGAGGCAG
TCAATGATGTTAATGACGTTAGCAACGATATTGATTTGCCAGAAGAAATT
GCTGCAGATTCTACTCTAAAAGAAGAACAGGCTGTAGAAGATGAAGATGA
AGAAAATAAAAGCGAACAAGATGAAGATCAAAATGACAATGAAGATCAAA
GTAATGACGAAATAGCCGAAGATGAAGAGGTAGTGAATATATGTGTTCTT
TACAGGGTTGTTTACCTACATGTGTATATATCGCTTTAGCTTTAATCCCA
AATATATGCGTTTTTTCCCTTATTTTTATTATTCATCATCCCCGTGATAA
GGTCCTGATATTTTATCAATGAAAAGTTTTAGATAGTCTTTGGAATTTTT
TCTTAACTTCATTGAAAAGAAATCGAATTTTAGTTAAACATACCCCTTTC
TTTTAAATGCACCCCTTGAATAAACGCCCCTCCCCTCCTTTAAGGAAAAA
TTTTCAATTAACGTCCCCCCCCCTAGGAGGGGCGTTTATTTGAAACAGAC
AGCAAAATGGAAGTATAATATGAATAAAAACTTAGATATGCAACAATAAA
AAGTATTCTTTTTGTATTCGAACTAGTTTTGACCCATTTCTACATCCCTA
AATTGACATATTTGTACTCAAATAATAATGAAAAGGCAAAATAAGGCTCG
AATTCGCGTTACCAAAGGGTCCTCATTTATAAATTTAGATCATATTAGAC
TTTAAATTTTTTAATAAATGTCCCCTTCTTTTAAACACCCCCTCAAAAAA
ATGCCCATTCTAAAAATCCTAAAATTCTGATAAACGCCCGAGGCGTTTAT
TCGAAGTATTACGGTAATTGAAATTCGAGACTATTTTACAATATAATGTC
CGCAACCTTATTTGACTAATTTAAAGAGCACCAAACGTAAACACGCAACA
AAGATCTTATCATTAGGGTAGACGATGTTATTGTCCGTTACAGTGATATT
AAAGGCGGGAAAATATGGTAGTATGGCGTTATGGCGCTACACAGAAATAA
ATCGGCGGGAGAGTTTCGAAGAAGACTGTCAACTCTACCGACTGTAAACT
CTTTTCGGCAAAAAAAACCGTTTGCGAATTTTCTTCGGCTTTGGGTTTTT
CTCTTAGATAGTGATTCGCCTTAGACTATAGCATAGTCATACCATTAGGG
TAGACTTACTAAATCAATGCACGTAACAAATGCAAGTTATGGTTGAAATA
TTTCTTTTATTTCTGTTCATTATATAGGAAAGTGACGAAAGTAATGATAA
CCAGAAACGTGGATTAAATAGTCCTGCAAAAGCTGCTCTTTTAAAAGCTG
GTCATTTCAAAGGTGGATACCCTGGATTTGGATACCCTGGATTTGGATAT
CCTGGATTTGGATACCCTAGATTTGGTAACCCTGGATTTGGTAACCCTGG
ATTTGGTAACCCATATTATGGCAATGGTTTTGGTTATCCATATTTTCCAT
ATTGTAAGTGAAATTTTCATGTGCGATTAAATACGCCTAATTTTCAGACT
GAACCAAAGGAAAAAACGCATTTTTATTAGCATAACGCTTATAAGCATAT
TCAGGATCAAATCTTGAAGACTTAAGCATTGTAACAAAACCATATTGGAG
CCGATGGGAGTTATGTTATTCAATTTTCCCCTTTTTTTTCAAGATTACCG
ACCAAATTTGATTCGAGGACGTGTGATTGCACGTAGAGCCGCTTTACCCT
TTGGATGGAGAGTTTCTGTGCAAATCCGACCCTTGGGAATCGTAAATGGT
TTCTCTAGCATCTTACACGCTTCAATTGGTGGAAATAAAAAGAACTACGG
TGACAGAGTCCCCGCCATCTTTTTCCGCCCGAAATCCACCCGATTACACA
TTTGCTCAGCTGTCAATGGACACCCAAACTATTGTTATGACTCTCATCCG
ATCCCACGCAACCGCTACACGAACGTTGTCATTCAACAAGTAGAGAAACC
TAATTACGGACACCTTTATTTCTATCAAATCTTCATCAATGGTAGAAAGG
TTAGAGATGTCTTGAATAAAAAACCACAAGTTTTCCGCAACGTTCAATAT
TTTGCCAGCAATCCATTCTATCAGCCAGCCATAGCTAACATCCGAAATTT
CAGACTCACTAACACACCCAAAAGACGTAAGTTGCTTTCATAACTTATTG
TGTAATAAGGGTAATGGTAAAATCTTGGTATTTCAATCAAGTAATGGAAA
CCTTTGACGAAATCATCGAAATAATTGTTTTGATTAAGTTTCATACAACG
AAAGCACAGAAAATCTCAGAGCTTCTGTTCCAATGAGGGTTCACTTTGGG
CTAATTTTTTTATGGTAAAAAGGGAAGGGAAACAGTAAAGAAAAATTAAG
TCTGGCAAATATAATACAACTTTTTAGTGAAAATAAAGAACTTCCTTTCA
TGCAGATCAAATTTCATAACAGTGCTGGAAAATAATATACAATATACNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTTGTAGAATAATAATTCTACCCTATATACCCTTCTAT
ACAATATAGACTCTGTTGTGTAGCAATCTACTAATTTGCCGTAATTCTAC
AGACGTCTGTAGAAATATAAATCTACATATTTTGTAGAATAATAATTCCA
CCCGTAAATCTACAGACATCTGTAGAAATTTTAAATTTACACCATCTACG
TATTCTGTAGAATTATGTGTGATAATGTGTTGCCAGTTCACGTATGTGTG
TTTTTCTGCGACGGAGACAGTAAGTTTCTAATTGTCTAGATCCTGACCAA
CTAAGGACAACGGTAAACAAGCACTTTTACTGTCTTCGGTTTTGTCGGCG
GTCAGAACTGGAGGTTTTTCCAAATCACTGCTAGTACAGACACTCCGCCG
TCCCTAAAACAACAAATACAAAAACTCGTTATTACCGCTACCTGGGAACC
AACTCCGGGAGAATAAAAATGACTAATATATTTTCAAACGGAATCTATCT
TTCTTTAGCCATCACTGCTCTGGTGAAGAGCAAAGTCATACAAAAAGTTC
CACTTTTACCATCGACATGGAGAATCACATTCCAACTTCGTCCTTATGAA
GCAGTGAATGGAGACTCAAGCATCTTGCATGCTTCAATTGGTGGTGACGC
AAAGAATTACGGTGACAGAAACCCTGCTGTTTTCTTCATTTCTAGAACAA
CTCGATTAAGAATCTGTTCAGCAATTAGTGGAAACATTAACCAGTGCTGG
GATAGTCCTACTGCAATCCCATTGAGGCGTTACAGCACAATCCTCATCCA
ACAAGTTCTCAGACGTACGCATGGTTATTACAAAACCTTCTTTGAAATCT
CCATCAATGGTCGACTTGTTCATAGAGTGATCAACAGTACACCACGCGCT
TTCAAAAATGTCAGCTATTTCGCCAGTAACCCTTTCATCCAAGCTGCTAT
TTGTGACATCAGAAATTTCAAATTACGTACCTTTGTCAAGAAATACTAAA
TAAATAAGCATATTGATAATATATGATTTATATAATATTTGAAAAGAAGG
TGTCGGTAGTTATGTATTTTTTTTTTGCATATTCTCTTAACATTCTTAAC
GGATTTATATTGAAAAGAACGTTTCTTTTCCGAAAATCAATCTCCGTCCA
TTTTATGTCCTCAAAACATAGTCATTTAGAAAGTTTGATTCTGTGAAGGA
AATAGATATACACGTTGTCTTTTTATAAGAACAAACTATTTAAGAACATA
AGGCTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007866XLOC_007866Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014056-exon-sc0000180-1575043694:83092..83147TCONS_00014056-exon-sc0000180-1575043694:83092..83147Clytia hemisphaericaexon
TCONS_00014056-exon-sc0000180-1575043694:81569..81765TCONS_00014056-exon-sc0000180-1575043694:81569..81765Clytia hemisphaericaexon
TCONS_00014056-exon-sc0000180-1575043694:80295..80493TCONS_00014056-exon-sc0000180-1575043694:80295..80493Clytia hemisphaericaexon
TCONS_00014056-exon-sc0000180-1575043694:79622..80104TCONS_00014056-exon-sc0000180-1575043694:79622..80104Clytia hemisphaericaexon
TCONS_00014056-exon-sc0000180-1575043694:76790..77539TCONS_00014056-exon-sc0000180-1575043694:76790..77539Clytia hemisphaericaexon
TCONS_00014056-exon-sc0000180-1510915933:83092..83147TCONS_00014056-exon-sc0000180-1510915933:83092..83147Clytia hemisphaericaexon
TCONS_00014056-exon-sc0000180-1510915933:81569..81765TCONS_00014056-exon-sc0000180-1510915933:81569..81765Clytia hemisphaericaexon
TCONS_00014056-exon-sc0000180-1510915933:80295..80493TCONS_00014056-exon-sc0000180-1510915933:80295..80493Clytia hemisphaericaexon
TCONS_00014056-exon-sc0000180-1510915933:79622..80104TCONS_00014056-exon-sc0000180-1510915933:79622..80104Clytia hemisphaericaexon
TCONS_00014056-exon-sc0000180-1510915933:76790..77539TCONS_00014056-exon-sc0000180-1510915933:76790..77539Clytia hemisphaericaexon
TCONS_00014056-exon-sc0000180-1491911889:83092..83147TCONS_00014056-exon-sc0000180-1491911889:83092..83147Clytia hemisphaericaexon
TCONS_00014056-exon-sc0000180-1491911889:81569..81765TCONS_00014056-exon-sc0000180-1491911889:81569..81765Clytia hemisphaericaexon
TCONS_00014056-exon-sc0000180-1491911889:80295..80493TCONS_00014056-exon-sc0000180-1491911889:80295..80493Clytia hemisphaericaexon
TCONS_00014056-exon-sc0000180-1491911889:79622..80104TCONS_00014056-exon-sc0000180-1491911889:79622..80104Clytia hemisphaericaexon
TCONS_00014056-exon-sc0000180-1491911889:76790..77539TCONS_00014056-exon-sc0000180-1491911889:76790..77539Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000180supercontigsc0000180:76790..83147 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.6295	0.707203	0.816458	0.559143	0	0.332986	0.12361	0	77.5819	3.98512	1.87087	52.3405	0.174123	0.0664059	3.05887e-08	2.26148e-07	0	0.0554837	0.332166	0.0534751	0	0	4.73676	3.85094	0.0516137	0.0690959	0.164793	0.351744	2.76186	3.55619
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014056 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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