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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014070 ID=TCONS_00014070|Name=TCONS_00014070|organism=Clytia hemisphaerica|type=transcript|length=6397bpRun BLAST on NCBI protein sequence of Collagen protein >TCONS_00014070-protein ID=TCONS_00014070-protein|Name=Collagen protein|organism=Clytia hemisphaerica|type=polypeptide|length=1758bp MDLISRSIIFAAIFLALYPGNASSNTQCGGCGACTSLCVGKKGERGAVGMRun BLAST on NCBI transcript from alignment at sc0000180:297876..318360- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014070 ID=TCONS_00014070|Name=TCONS_00014070|organism=Clytia hemisphaerica|type=transcript|length=20485bp|location=Sequence derived from alignment at sc0000180:297876..318360- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000180:297876..318360- >TCONS_00014070 ID=TCONS_00014070|Name=TCONS_00014070|organism=Clytia hemisphaerica|type=CDS|length=116094bp|location=Sequence derived from alignment at sc0000180:297876..318360- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014070 vs. Swiss-Prot (Human)
Match: CO4A6 (Collagen alpha-6(IV) chain OS=Homo sapiens GN=COL4A6 PE=1 SV=3) HSP 1 Score: 318.931 bits (816), Expect = 1.258e-87 Identity = 495/1447 (34.21%), Postives = 609/1447 (42.09%), Query Frame = 2
Query: 1370 FKGEAGPIGPEGTAGKPGEPGMKGPIGPSGEKGDFGIKGEPGRPGTSVKGPPGMDGEPGP------IGEPGKQGN--------------RGFPGQPGPPG----------KVTDSEGNEILVGDQGEPGAQGEAGVQGPAGPPGTRGPKGEDCKTCPPGPQGEKGLPGQAGLNGADGEKGEKGQLGEPGVAGSRGDPGARXXXXXXXXXXXXXXXXXXXXXXPAGNDIVVRGDRGEKGEAGKAGQDXXXXXXXXXXXXXXXXXXXXXXXXXLQGSPGDRGAPGVSGIAGFDGDKGAKGEKGS----GLRGFKGERGPQGA------EGPQGPRGPFGEQGEKGEPFPTMLKGDQGPKXXXXXXXXXXXXXXXXESGPQGFQ------GEIGPRGEPGS-GEKGERGEPGQRGEAGQVGEV------GKDGIDGERGPKGEPGQDGPPGPASXXXXXXXXXXXXXXXXRDGPPGNSAPKGEPGQDGFDXXXXXXXXXXXXXXXXXXXXXXXXXNDGLRGEKGDAGESSIGQKGEPGPDGQKGE-------------------RGDNGRDGAPG-EGIPGEQGVKGTKGDSIRGADGQKGDKGIEGIRGPAGKPGYKGESGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKGDPGFIGQKGTKGDSGPRGKPGATSNVVGPKGNRGPPGSKGEPGREGEKGNEGLAGPKGNXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLQGRPGAIGPVGPKGDQGEEGPKGSMGDPGRQXXXXXXXXXXXXXXXXXXXXXXEPGSKGEVGPRGEKGSRXXXXXXXXXXXXXXXXXXXXXXXXXDYIIKAGELPVGQLINKGDPGPAGSKGEPGADGKKGTQGQRGLIGPRGESGVRGDAGGKGPRGDAGVDGEKGDIG------------SKGSKGEPGRDGPXXXXXXXXXXXXXXXXXPIGPQGQEGPAGIQGYKGQKGDVGKEGPVGPPCPMXXXXXXXXXXXXXXXXXXXXXEPGPVGQSXXXXXXXXXXXXXXXXQKGVKGDVG----------PIGPAGETGPRGLQGERGDIGQKGEPGKEGSKGDRGPAGVXXXXXXXXXXXXXXXXXXXVGDQGEKGDKGSQGPKGVKGDQGPQGDIGPNGLNGDPGPIGKQGAQGAKGNLXXXXXXXXXXXXXXXXXXXXXXXLVIHSQSTNVPDCPQNYNKLWDGYSFLYAQGNERAFGQDLGKPGSCLSRFSTMPFMFCDLQNQCTVASRNDYSFWLSTPEXMPFMFCDLQNQCTVASRNDYSFWLSTPEPASMMAPAKGPEVRPYISRCSVCQAPANVMAVHSQSSTIPSCPAGWNGLWRGWSFLMYNXXXXXXXXXXXXXXXXXXXXFRVNPYIECHG-RGTCHYFGPTLSFWLSTIDEQSQF-SVPQSETIKSGRLRERVSRCQVCVKDV 5419
KG G G G G G PG+ GP+GPSG KG KGEP ++++G PG G+ G IGEPGK G +GFPG+ G PG G L G +G PG +G+ G+ G G PG+ KG PG G G PG G G G +G G G+PG +GS+G+PG+ G G G RG++G G G G+DG G G G G G G G+PG++G G++G GF GD G G KG GL G KGERG G G G GP+G +G+ G P G G G G RG G G + G G + G +G +G PGS G G G +GE G VG V G GI G RG KG PG G GP+ R G PG +G PG G R P N L+G+KG G S G G PGP G KGE +G +G+ G PG GI G G+KG+ G I G G G+ G +GIRG G PG G G G PG GQ G G G +G+ G N+ G PG+KGE G+ G G+ GL G G PGV +GE GL G G G +GP G G GPKG G PG + G PG G GP+GEKG G I G PG G +G+ G G G QG GL G G S AG G G G+DGE+G G ++G G+PG G GP+G +G GI G+ G G++G +G G P M G PG VG +PG G G+ G G G++GD G P GP G G G+ G GD G +G G +GSKG G G + G GL G G G+ G G QGP G +G G Q GP G+ G PG + G LV HSQS VP CP ++LW GYS L+ +G E+A QDLG GSCL RFSTMPF++C++ C A RND S+WLST +P M P ++ YISRCSVC+AP+ +AVHSQ TIP CP GW LW G+SFLM+ +AGAEG GQ L S GSCL++FR P+IEC G RGTCHYF SFWL+T++E+ QF +P SET+K+G+L RVSRCQVC+K +
Sbjct: 511 LKGARGDRGSGGAQGPAGAPGLVGPLGPSGPKGK---KGEPIL--STIQGMPGDRGDSGSQGFRGVIGEPGKDGVPGLPGLPGLPGDGGQGFPGEKGLPGLPGEKGHPGPPGLPGNGLPGLPGPRGLPGDKGKDGLPGQQGLPGS---KGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGP----------------RGEKGLPGFPGLPGKDGLPGMIGSPGLPGSKGATGDIFGAE-NGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPGLPGIPGTRGLKGIPGSTGKMGPSG----------------RAGTPGEKGDRGNPGPVGIP------------------SPRRPMSNLWLKGDKGSQG--SAGSNGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKGVSGKPGPPGFMGIRGLPGLKGSSG--ITGFPGMPGESGSQGIRGSPGLPGASGLPG-----------------------------LKGDNGQTVEISGSPGPKGQPGESGFKGTKGRDGLIGNI-------GFPGNKGEDGKVGVSGDVGLPGAPGFPGVAGMRGEP------------------GLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLH-GLNGLPGTKGTHGTPGPSITGVPGPAGLPGPKGEKGYPG--------------------------------------IGIGAPGKPGLRGQKGDRGFPGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGLDGERGRPGPAGPPGPPGPSSNQGDTGDPGFPGIP------------------GPKGPKGDQGIPGFSGLPGELGLKGMRGEPGFM--------------------GTPGKVGPPGDPGFPGMKGKAGPRGSSGLQGDPGQTPTAEAVQVPPGPLGLPGIDGIPGLTGDPGAQGPVGLQGSKGLPGIPG----------KDGPSGLPGPPGALGDPGLPGLQGPPGFEGAPGQQ---GPFGMPGMPGQSMRVGYT-----------------------------LVKHSQSEQVPPCPIGMSQLWVGYSLLFVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCHYARRNDKSYWLSTTAPIPMM------------------------------PVSQTQIPQYISRCSVCEAPSQAIAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEERQQFGELPVSETLKAGQLHTRVSRCQVCMKSL 1691 The following BLAST results are available for this feature:
BLAST of TCONS_00014070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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