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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014078 ID=TCONS_00014078|Name=TCONS_00014078|organism=Clytia hemisphaerica|type=transcript|length=2982bp
ATGATATTAAAATAATTCTTAAGCACACCTTGCAGCTGTCCCAacaaata
caaaaacaacaaagcgCGGACACAAAGGTGTATTATTCCATCAATGACAA
CACTAAATCACACATGAAACAAACCGACTAATGGCTCCGTCAAGTAATTA
AAAACCATGAAAACGTGAAAAACTACATTATAAGAGGAGGAACAAATTCA
GACGCTTCAAGCACGAACAAAAACaatgtatatatatttttctttatgtT
ATAACACTCTTTCGGACTGCGTCTTTTAAAATGTCACTTTCAAGGATATC
CGGGAAGATGAGGAATGGTGTTAGTAAAATTCTAGCAAATAAGTATTGAA
ATTGACTAGCGGTGATGCTCTTTCTCCCGGATGTTCTGTATAGTGACATT
AACCTACACGCAATCAACAAGTCATATTTTACCGCATTGATGTGTGCGGA
AGttgagcaaaaaataaatataagaCGTAAGAAATGTATCGATTCCTTTC
CAACAGATTTTATCAATGTCCAGaataatgtcacaatttggacaTTTTAC
GTCATCGATAAAAACAtagacaataaaaaaagaaatgcgTGGCTAGATTC
AATGAGTTACAAAATAGCGATAAAAAGATATCGAAATTCCTCTGAGAGAA
GTAATCAGTGCTTGACAAAGGAATGACATAAAACAGTCTTTTTATGAGGT
GTTTGCGAAAAATGATAAGCTATTCATGCATCATAGAGATGNAACTACGG
TATGTAATAATGAATAAGAAACATCTTCGTTCCCAACATCCTCATTCATG
ATATTAAAATAATTCTTAAGCACACCTTGCAGCTGTCCCAacaaatacaa
aaacaacaaagcgCGGACACAAAGGTGTATTATTCCATCAATGACAACAC
TAAATCACACATGAAACAAACCGACTAATGGCTCCGTCAAGTAATTAAAA
ACCATGAAAACGTGAAAAACTACATTATAAGAGGAGGAACAAATTCAGAC
GCTTCAAGCACGAACAAAAACaatgtatatatatttttctttatgtTATA
ACACTCTTTCGGACTGCGTCTTTTAAAATGTCACTTTCAAGGATATCCGG
GAAGATGAGGAATGGTGTTAGTAAAAATCTAGCAAATAAGTATTGAAATT
GACTAGCGTTGATGCTCTTTCTCCCGGATGTTCTGTATAGTGACATTAAC
CTACACGCAATCAACAAGTCATATTTTACCGCATTGATGTGCGCGGAAGt
tgagcaaaaaataaatataagaCGTAAGAAATGTATCGATTCCTTTCCAA
CAGATTTTATCAATGTCCAGaataatgtcacaatttggacaTTTTACGTC
ATCGATAAAAACAtagacaataaaaaaagaaatgcgTGGCTAGATTCAAT
GAGTTACAAAATAGCGATAAAAAGATATCGAAATTCCTCTGAGAGAAGTA
ATCAGTGCTTGACAAAGGAATGACATAAAACAGTCTTTTTATGAGGTGTT
TGCGAAAAATGATAAGCTATTCATGCATCATAGAGATGTCAGCTCGCCGA
CCGCCTGCATAaaataaatgatttttgattGTGACAATTAactacactct
ttttttcttactagaacaattttataagaacggtTAGGATAGAAAATCGG
CAAAACTAAGAATGATGTAAGAATAACTCCGAGCATTgctgaattttaag
taaaaccaAGTGTCGAATCAATAAAAAGTAACGTATAATGCTAGATagga
acaaaataagaacaatttgatgtCGAAAGTGTCAAGATGTAAAAAACAAC
CCATCCTCAACAAAATTTTAATGGTTCTTGTATAAAAAAAGAGTTGTACA
ATAAAAAAATGGGCAGCTGtaacaagaaacaaaaagttatgagccaattt
ttttttctccaattcaTTTGCGTCCAATTAGCGTACGTAAAGAAGTGAAG
TCAACCAATTTGACGAATTTCATTGTGAGTATTGTTATTCTATTAAAATG
TTAACGAGCCCCAATTATCGAACGCATTGAATAGATGGCagatgatgatg
acgatgatggGGGTTACATATCAAGATCAAGCCAAGAGATAAAAGAATGT
AAAATGCAACACAACAAAGCCACTTTGCTACCAGGATTACAACACGGAAA
AAGTCGACTTTGTCCAGAAAACTACTACtgtaatgaagaaaaaaacgagA
TTTGCAGGTCGATGCAACAGAACCCAACGTAGCCCTTTGAGCCTCTTGCA
AGACTGAACAGAGAAAGATGATACTTCGAGCCTTTTAAAGTGGACTTCTG
TTAAACACCTCTGCTAACACCTCTACATGATAACAAAGGCATTTTCTCAA
TTTGTAAAAGAaaagcaatttttcaaattgatgtcaaaaaattattttcc
aaccAATTACTCAAGCAACCGACCTATATGACAACAAAAGAGACATTTTC
GAAATTCTTAATAACTtgacaagaaataaaaaagttagcaacaacaaaga
ttttttttgcaaacgaCTTAAACCTGCacaaataaaaagacaaaacaaaG
CTGGTTGCTAGGGTGAAAATGTTTCCTAAGTGACCGTTACTAGCAGACCA
GTTGAGTAATGTAAAGCTTGAAAACCTTAAAGCACTCGGATTTACAATTT
TGCAATCAAAGGAATGCAAATAGTGTGGGTCAGTGTAGAGCAGTTTCCAT
TCCATACTGACCGGTCATTTCGGCCAACAAGCGTAGGTATAAAATTCAAA
GTAGTGCCAACAAGTTTCTAACATTAGAaagacatacacgttttttataa
gaacaaaccatataagaacataaggcttcgatgggcaaaatgttaagagt
aagttaagaacattttaaggctttgtagactctaaaacatcGAATTTCAT
TGGAAAATGGACAGAAATActtaaaaatcgcgaaaataaaaacacgttaa
gaacatttttaggcttaaaactcaaaaagtta Run BLAST on NCBI transcript from alignment at sc0000180:122045..125026 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014078 ID=TCONS_00014078|Name=TCONS_00014078|organism=Clytia hemisphaerica|type=transcript|length=2982bp|location=Sequence derived from alignment at sc0000180:122045..125026 (Clytia hemisphaerica)
taactttttgagttttaagcctaaaaatgttcttaacgtgtttttatttt
cgcgatttttaagTATTTCTGTCCATTTTCCAATGAAATTCgatgtttta
gagtctacaaagccttaaaatgttcttaacttactcttaacattttgccc
atcgaagccttatgttcttatatggtttgttcttataaaaaacgtgtatg
tcttTCTAATGTTAGAAACTTGTTGGCACTACTTTGAATTTTATACCTAC
GCTTGTTGGCCGAAATGACCGGTCAGTATGGAATGGAAACTGCTCTACAC
TGACCCACACTATTTGCATTCCTTTGATTGCAAAATTGTAAATCCGAGTG
CTTTAAGGTTTTCAAGCTTTACATTACTCAACTGGTCTGCTAGTAACGGT
CACTTAGGAAACATTTTCACCCTAGCAACCAGCtttgttttgtcttttta
tttgtGCAGGTTTAAGtcgtttgcaaaaaaaatctttgttgttgctaact
tttttatttcttgtcaAGTTATTAAGAATTTCGAAAATGTCTCTTTTGTT
GTCATATAGGTCGGTTGCTTGAGTAATTggttggaaaataattttttgac
atcaatttgaaaaattgctttTCTTTTACAAATTGAGAAAATGCCTTTGT
TATCATGTAGAGGTGTTAGCAGAGGTGTTTAACAGAAGTCCACTTTAAAA
GGCTCGAAGTATCATCTTTCTCTGTTCAGTCTTGCAAGAGGCTCAAAGGG
CTACGTTGGGTTCTGTTGCATCGACCTGCAAATctcgtttttttcttcat
tacaGTAGTAGTTTTCTGGACAAAGTCGACTTTTTCCGTGTTGTAATCCT
GGTAGCAAAGTGGCTTTGTTGTGTTGCATTTTACATTCTTTTATCTCTTG
GCTTGATCTTGATATGTAACCCccatcatcgtcatcatcatctGCCATCT
ATTCAATGCGTTCGATAATTGGGGCTCGTTAACATTTTAATAGAATAACA
ATACTCACAATGAAATTCGTCAAATTGGTTGACTTCACTTCTTTACGTAC
GCTAATTGGACGCAAAtgaattggagaaaaaaaaattggctcataacttt
ttgtttcttgttaCAGCTGCCCATTTTTTTATTGTACAACTCTTTTTTTA
TACAAGAACCATTAAAATTTTGTTGAGGATGGGTTGTTTTTTACATCTTG
ACACTTTCGacatcaaattgttcttattttgttcctATCTAGCATTATAC
GTTACTTTTTATTGATTCGACACTtggttttacttaaaattcagcAATGC
TCGGAGTTATTCTTACATCATTCTTAGTTTTGCCGATTTTCTATCCTAac
cgttcttataaaattgttctagtaagaaaaaaagagtgtagtTAATTGTC
ACaatcaaaaatcatttatttTATGCAGGCGGTCGGCGAGCTGACATCTC
TATGATGCATGAATAGCTTATCATTTTTCGCAAACACCTCATAAAAAGAC
TGTTTTATGTCATTCCTTTGTCAAGCACTGATTACTTCTCTCAGAGGAAT
TTCGATATCTTTTTATCGCTATTTTGTAACTCATTGAATCTAGCCAcgca
tttctttttttattgtctaTGTTTTTATCGATGACGTAAAAtgtccaaat
tgtgacattattCTGGACATTGATAAAATCTGTTGGAAAGGAATCGATAC
ATTTCTTACGtcttatatttattttttgctcaaCTTCCGCGCACATCAAT
GCGGTAAAATATGACTTGTTGATTGCGTGTAGGTTAATGTCACTATACAG
AACATCCGGGAGAAAGAGCATCAACGCTAGTCAATTTCAATACTTATTTG
CTAGATTTTTACTAACACCATTCCTCATCTTCCCGGATATCCTTGAAAGT
GACATTTTAAAAGACGCAGTCCGAAAGAGTGTTATAacataaagaaaaat
atatatacattGTTTTTGTTCGTGCTTGAAGCGTCTGAATTTGTTCCTCC
TCTTATAATGTAGTTTTTCACGTTTTCATGGTTTTTAATTACTTGACGGA
GCCATTAGTCGGTTTGTTTCATGTGTGATTTAGTGTTGTCATTGATGGAA
TAATACACCTTTGTGTCCGcgctttgttgtttttgtatttgtTGGGACAG
CTGCAAGGTGTGCTTAAGAATTATTTTAATATCATGAATGAGGATGTTGG
GAACGAAGATGTTTCTTATTCATTATTACATACCGTAGTTNCATCTCTAT
GATGCATGAATAGCTTATCATTTTTCGCAAACACCTCATAAAAAGACTGT
TTTATGTCATTCCTTTGTCAAGCACTGATTACTTCTCTCAGAGGAATTTC
GATATCTTTTTATCGCTATTTTGTAACTCATTGAATCTAGCCAcgcattt
ctttttttattgtctaTGTTTTTATCGATGACGTAAAAtgtccaaattgt
gacattattCTGGACATTGATAAAATCTGTTGGAAAGGAATCGATACATT
TCTTACGtcttatatttattttttgctcaaCTTCCGCACACATCAATGCG
GTAAAATATGACTTGTTGATTGCGTGTAGGTTAATGTCACTATACAGAAC
ATCCGGGAGAAAGAGCATCACCGCTAGTCAATTTCAATACTTATTTGCTA
GAATTTTACTAACACCATTCCTCATCTTCCCGGATATCCTTGAAAGTGAC
ATTTTAAAAGACGCAGTCCGAAAGAGTGTTATAacataaagaaaaatata
tatacattGTTTTTGTTCGTGCTTGAAGCGTCTGAATTTGTTCCTCCTCT
TATAATGTAGTTTTTCACGTTTTCATGGTTTTTAATTACTTGACGGAGCC
ATTAGTCGGTTTGTTTCATGTGTGATTTAGTGTTGTCATTGATGGAATAA
TACACCTTTGTGTCCGcgctttgttgtttttgtatttgtTGGGACAGCTG
CAAGGTGTGCTTAAGAATTATTTTAATATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014078-exon-sc0000180-1491911889:122045..125026 | TCONS_00014078-exon-sc0000180-1491911889:122045..125026 | Clytia hemisphaerica | exon |
| TCONS_00014078-exon-sc0000180-1510915933:122045..125026 | TCONS_00014078-exon-sc0000180-1510915933:122045..125026 | Clytia hemisphaerica | exon |
| TCONS_00014078-exon-sc0000180-1575043694:122045..125026 | TCONS_00014078-exon-sc0000180-1575043694:122045..125026 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000180 | supercontig | sc0000180:122045..125026 . |
Blast
The following BLAST results are available for this feature:
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