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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014087 ID=TCONS_00014087|Name=TCONS_00014087|organism=Clytia hemisphaerica|type=transcript|length=1995bp
CATGATCCTTGCCACAAATCACTGATTAACTGTATGAAACGCTTTTGCAG
TTATTCTCGAAGAAACTGGGGAGGATATTTTTGTGGTTCTTTGAGCAAAA
ATGAACTAATCTTTTAACAACTCAACTCATGAAATCTTGGTGGATCACAA
ctgattaaaatgaaaaaaaaaaaaaatgaaacactgtcaagaaaaacact
gaaaacttCAAAACTGACAAGCATGACcaggtatgtttttttttaacttt
tcagttCTATATACCAGACTCTCCCACTCTATACAATCGATAACTTTTTC
CCAACCATTGTTCATTGATGACCAATCAAtaactgattgattgattggat
ATCGACTGATGGTGATGGGGAATCGAGCCTGTTCTATAAATAATTTGCTA
TATCTTTTTTTACCAATGTTTTGTTCAATGGATAGGCAACCAAACCTCac
ttctcaaaaattaaaaaagattatCAAGTAAGTTAATATTCAGGGAaatt
ttgtttcgatttttcAGATGACACCCGCGCAAAAATAAGTCTGAATGGAA
ATCTGAAAAGGCACATAGAACGTACGCAATAAGGCGACTatctaaaatat
gttctgttcgcgtcataaaacatcttcaaatccagtcggtcggtcggtcg
gtagtaaattttgtcgggttttttaaatttaataaatctcgaagaatcaa
gtcggcaatcaacaaaatctcttgccgccatctttgatttgccAAATTGA
ATGTGCGCACACATGTGTGAACCTTAAAAgcggaccttattttcggctcT
CGGGGGTATTGGCCGTACCGCGTCGCCAAATttcgacttgaaaatttcaa
taagggtacatgaaaaaactcaaacgggactcaatgtgggttaagtaaac
aaaaactcttagcgaatgatgattcaaagacgtgcttagctatcaaaaac
tttttctgacatttttccgACGTGTCCGACTCgggatttatgttttgaag
gtgagtcggtcggcgacgcgaacggaacatattttagattgcCGCCTAAG
AGGGAGggggatcttctcaaaagctTGTGCTTTTGACAGGGGGGAGGGGT
CAAATGGAAATTTTACgtactcgggtaacttaatgcgcGTGtcccaattt
cttcaaaaactaCTTATATTTCTACatttctttttgtatttatgacgtca
taattaggtTTTCTTAACCCctttcaacctaggcttttacaggcggttca
gaactaggggaaAACTACGTATTTACTagagggggtatagccatttgtgt
acgcttgcgtacagggggagggggtacttgaTTTTCAACATCTTAGTGTG
TACGTACTACGGGGACAGCCCCAAGGTCTCAgccgtgaatttttttttac
aaggtgGTATTCCAAAAATCCTGTGTCAGACTTTCTGAAACACTGAGTAT
TGAGCTGAAGTTAATTCcttttttaagtttaatttttctaaagtttgcag
aatgaattgaaaaaaatgttttcaaaaatatttttcagaggGTCTTGGTT
TTCGGTTGGTTATTAAGTGAAAGAAAGCTGTCGATTGTATTTAGTGAGAG
TCTGGTCCATGtgatttttacataatttcttGTGCCAatgattaaaacat
tttttaatattatgGTATTATTACACTTTTGGATTAGTAAAAGttcaatg
taaaaattttaatcttgtggactttgaagattttattttaaagNTTCCTT
CTTCAAAGGCGTTTTTGCGAGCAACAATACTTTCCCTTTGAGATGGTTTA
TGCTAGATTACAAAGGGGATCATTAAATGAATCGATGCGGCTACACATTT
TAGCCACATTAAAAACCAAAGTTCCTTCCCAATAAAGTTAGCCGGTATCT
TTTGATGTAGTGGTCACGATTGTCTTTTTGACATCAATAATAAGGTTTTA
AATGTGTCAAGCAGAAAGTAACACTTTGGCATTGCACTTAACACT Run BLAST on NCBI transcript from alignment at sc0000180:439198..441192 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014087 ID=TCONS_00014087|Name=TCONS_00014087|organism=Clytia hemisphaerica|type=transcript|length=1995bp|location=Sequence derived from alignment at sc0000180:439198..441192 (Clytia hemisphaerica)
AGTGTTAAGTGCAATGCCAAAGTGTTACTTTCTGCTTGACACATTTAAAA
CCTTATTATTGATGTCAAAAAGACAATCGTGACCACTACATCAAAAGATA
CCGGCTAACTTTATTGGGAAGGAACTTTGGTTTTTAATGTGGCTAAAATG
TGTAGCCGCATCGATTCATTTAATGATCCCCTTTGTAATCTAGCATAAAC
CATCTCAAAGGGAAAGTATTGTTGCTCGCAAAAACGCCTTTGAAGAAGGA
ANctttaaaataaaatcttcaaagtccacaagattaaaatttttacattg
aaCTTTTACTAATCCAAAAGTGTAATAATACcataatattaaaaaatgtt
ttaatcatTGGCACaagaaattatgtaaaaatcaCATGGACCAGACTCTC
ACTAAATACAATCGACAGCTTTCTTTCACTTAATAACCAACCGAAAACCA
AGACcctctgaaaaatatttttgaaaacatttttttcaattcattctgca
aactttagaaaaattaaacttaaaaaagGAATTAACTTCAGCTCAATACT
CAGTGTTTCAGAAAGTCTGACACAGGATTTTTGGAATACcaccttgtaaa
aaaaaattcacggcTGAGACCTTGGGGCTGTCCCCGTAGTACGTACACAC
TAAGATGTTGAAAAtcaagtaccccctccccctgtacgcaagcgtacaca
aatggctataccccctctAGTAAATACGTAGTTttcccctagttctgaac
cgcctgtaaaagcctaggttgaaagGGGTTAAGAAAacctaattatgacg
tcataaatacaaaaagaaatGTAGAAATATAAGtagtttttgaagaaatt
gggaCACgcgcattaagttacccgagtacGTAAAATTTCCATTTGACCCC
TCCCCCCTGTCAAAAGCACAagcttttgagaagatccccCTCCCTCTTAG
GCGgcaatctaaaatatgttccgttcgcgtcgccgaccgactcaccttca
aaacataaatcccGAGTCGGACACGTcggaaaaatgtcagaaaaagtttt
tgatagctaagcacgtctttgaatcatcattcgctaagagtttttgttta
cttaacccacattgagtcccgtttgagttttttcatgtacccttattgaa
attttcaagtcgaaATTTGGCGACGCGGTACGGCCAATACCCCCGAgagc
cgaaaataaggtccgcTTTTAAGGTTCACACATGTGTGCGCACATTCAAT
TTggcaaatcaaagatggcggcaagagattttgttgattgccgacttgat
tcttcgagatttattaaatttaaaaaacccgacaaaatttactaccgacc
gaccgaccgactggatttgaagatgttttatgacgcgaacagaacatatt
ttagatAGTCGCCTTATTGCGTACGTTCTATGTGCCTTTTCAGATTTCCA
TTCAGACTTATTTTTGCGCGGGTGTCATCTgaaaaatcgaaacaaaattT
CCCTGAATATTAACTTACTTGataatcttttttaatttttgagaagtGAG
GTTTGGTTGCCTATCCATTGAACAAAACATTGGTAAAAAAAGATATAGCA
AATTATTTATAGAACAGGCTCGATTCCCCATCACCATCAGTCGATatcca
atcaatcaatcagttaTTGATTGGTCATCAATGAACAATGGTTGGGAAAA
AGTTATCGATTGTATAGAGTGGGAGAGTCTGGTATATAGaactgaaaagt
taaaaaaaaacatacctgGTCATGCTTGTCAGTTTTGaagttttcagtgt
ttttcttgacagtgtttcattttttttttttttcattttaatcagTTGTG
ATCCACCAAGATTTCATGAGTTGAGTTGTTAAAAGATTAGTTCATTTTTG
CTCAAAGAACCACAAAAATATCCTCCCCAGTTTCTTCGAGAATAACTGCA
AAAGCGTTTCATACAGTTAATCAGTGATTTGTGGCAAGGATCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014087-exon-sc0000180-1491911889:439198..441192 | TCONS_00014087-exon-sc0000180-1491911889:439198..441192 | Clytia hemisphaerica | exon |
| TCONS_00014087-exon-sc0000180-1510915933:439198..441192 | TCONS_00014087-exon-sc0000180-1510915933:439198..441192 | Clytia hemisphaerica | exon |
| TCONS_00014087-exon-sc0000180-1575043694:439198..441192 | TCONS_00014087-exon-sc0000180-1575043694:439198..441192 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000180 | supercontig | sc0000180:439198..441192 . |
Blast
The following BLAST results are available for this feature:
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