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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014092 ID=TCONS_00014092|Name=TCONS_00014092|organism=Clytia hemisphaerica|type=transcript|length=2324bp
tgagaaaataacatttttaaattcggtttcttttaagaaccttccaattc
AGCTTTCCacgaggctgattatgtcaaaaagtttagaaacatgtatgaaa
catttaaggctcaaaaggccgatttcttaagaaacattgaggctgcttga
taaaactagtttcttaaaaaaacaacaacgtGTAGTCTTTTTTGCACAAT
CAACACATCTGCATCACCGTCAATTTGGTCTGTCAGGAATCCTTGCTTTT
TGAAAGCAGACGAAAGTATTTTGATCAACTGAACTTTGTTAGATGGTTAG
ATAAGAACAATTCTCTGTTGGTAGTCACTTTAACATCTAGTGAGATGGAT
ACAGAAGCTGATGTTTTCCCCGTTCGTCGATCGTGTTCTTGTCCTTTTGT
TGACATTTCATCCTcatttccatcgaaaacaatgaCGACAGTAGAAAAAA
CACTTGAAGCTATTCTTGAGGAAGTTGACATACTCGTCGATCACCGCTGA
ATATGTTGTTTTCGGCCACGAGACTTTGTGTAGCTATGCACCACCATCGG
TGAGATTCTAGCTGACAAGCGTTTGCTTGCATGCGTTTGCTTTGTGATGA
AGTGGTTACGAAGGACTTTTGAGGTTTTAAGCTTGAATAATGATATAGGT
TCGGGGGTTAGGCAGGACAGAAATTTTCACCAACATCCTCAGTGAAGTTG
ATAAGAGCAGTTAGTCGACTAAAAAATATTGTTGGACTTTTTGCTGTCTC
CAATCTTGATTGCTGAAAGCATGTCTTCGAAGGTTTTTGCTTTCTCCTTC
TGTCGAATCCTGACCTCCTCGAACACAACGTCGTCTTGCTTCAACGTCTT
CGGCGACATCACAGTTAATCTCTGGCTCAGCGATCAGTTCACTCGAGAGA
CTCTTCAATTCAGGCTCTGTTTTGTCGAACGGTTTGTGGTTGCCAAACCA
TTCCTTCACGGTAGCGAAATCTTTATTGTCACACTTTATTCTGCTCAACG
AAAGATTGACATGTTGCTGGCTCGTTTTGACATAGCGTTGTGGATGTCGG
CAGATCAATGAATGCTTCCAATCCAAAGTTGACGTGTTGATGCGGCGATT
CCCCTACTACAAGTGAGGCCTCCAGTGCTTTTGATGAATTGCATCATTAC
CTGCTTGATGATCAAATCCGACCATAAACCAGCCCAAAATCTATCGCTTC
GTCTCACAGTGTGGTAACCATTTGAAAACTGCTTGTAAACCAAAGGGTGA
ATTGTCTTGAGCTTGAGTATATTTTGGAGGTGTAGCCTGGCGTTCTTAGC
GTAGTGGATGTGAGCGGTTGCTGCAAACAGGTCGATCATCCGAGAAAAGG
TANTTCTTAGCGTAGTGGATGTGAGCGGTTGCTGCAAACAGGTCGATCAT
CCGAGAAAAGGTAAAGCTTCCAATCTCCTGTCTTTTCTGATCTATTGAAA
TCCTTGACAACTTCCTTGTAATCTAGATATTGCAACCATAATTTCGCGGT
ACGTGAGCATGTTTTCAGATCATCTTTGTAATCTTCTAGAAGTTCCAGAA
TATATATCTGCTCATGTCCAAATCAATGGTGGGATCAACAGCATTGGCAA
TCACGTTCATATCGGTTGTCAGATCTTCGATTTCTACAGCCTCATCATCA
GAACCAACAAGTGGTGACACCAATTTGCAAACAAGAGCAGATTCAACTAG
AAAATATTCCCTCAGTGCTCACTTGTGATGTGTGGAACAGTGTTCTTTGC
ATAAATCTGCTCCATCGATTCCTCCAAGCCACTTGCTTTCATTAACGATC
CGATAATACCCATAAAGCTCATTAGCAAATGGAAACCACCAAGCATACAT
ACCATGTTTAACGACTTTTCTTTGATTATTTCATACGCTTTAATCCACAA
GGGTTGATCAAACGTAATCACAGGGGTGTTGATGCCTGAGAATTCCGATT
GAGATTTTACAAACACGAGCGTTGAGTAGGCACATGTCATATCATTCGGG
TTTAAGTCGATGATCGGGAGCAGCGATACTGAAGATTGACCAGGGTAGGT
GCCAGTGCAGACTTTCCTCATATACCCGGGCCAGCTTGGTTGGAGCATCG
GATGAAAGTGAAGGACGTGAAATATACTATCATATTTGATATCCCTTCGG
GGAGAACGTTGAACTTTAATCGTGTAGCATTGTTTTATGGTGTAgatgaa
aaaacgagtcccacctCATGAAGTGTTCTCTTTCCGTCAATTGTGCAAAA
ATCGTGATCGACGTTATCATCGGACCATTGCCCGAACTTACCGACTAGAT
TCGCGAAGCTTTTTTAATCCCTGG Run BLAST on NCBI protein sequence of TCONS_00014092-protein >TCONS_00014092-protein ID=TCONS_00014092-protein|Name=TCONS_00014092-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MLQPSWPGYMRKVCTGTYPGQSSVSLLPIIDLNPNDMTCAYSTLVFVKSQ
SEFSGINTPVITFDQPLWIKAYEIIKEKSLNMVCMLGGFHLLMSFMGIIG
SLMKASGLEESMEQIYAKNTVPHITSEH Run BLAST on NCBI transcript from alignment at sc0000180:469178..471501 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014092 ID=TCONS_00014092|Name=TCONS_00014092|organism=Clytia hemisphaerica|type=transcript|length=2324bp|location=Sequence derived from alignment at sc0000180:469178..471501 (Clytia hemisphaerica)
CCAGGGATTAAAAAAGCTTCGCGAATCTAGTCGGTAAGTTCGGGCAATGG
TCCGATGATAACGTCGATCACGATTTTTGCACAATTGACGGAAAGAGAAC
ACTTCATGaggtgggactcgttttttcatcTACACCATAAAACAATGCTA
CACGATTAAAGTTCAACGTTCTCCCCGAAGGGATATCAAATATGATAGTA
TATTTCACGTCCTTCACTTTCATCCGATGCTCCAACCAAGCTGGCCCGGG
TATATGAGGAAAGTCTGCACTGGCACCTACCCTGGTCAATCTTCAGTATC
GCTGCTCCCGATCATCGACTTAAACCCGAATGATATGACATGTGCCTACT
CAACGCTCGTGTTTGTAAAATCTCAATCGGAATTCTCAGGCATCAACACC
CCTGTGATTACGTTTGATCAACCCTTGTGGATTAAAGCGTATGAAATAAT
CAAAGAAAAGTCGTTAAACATGGTATGTATGCTTGGTGGTTTCCATTTGC
TAATGAGCTTTATGGGTATTATCGGATCGTTAATGAAAGCAAGTGGCTTG
GAGGAATCGATGGAGCAGATTTATGCAAAGAACACTGTTCCACACATCAC
AAGTGAGCACTGAGGGAATATTTTCTAGTTGAATCTGCTCTTGTTTGCAA
ATTGGTGTCACCACTTGTTGGTTCTGATGATGAGGCTGTAGAAATCGAAG
ATCTGACAACCGATATGAACGTGATTGCCAATGCTGTTGATCCCACCATT
GATTTGGACATGAGCAGATATATATTCTGGAACTTCTAGAAGATTACAAA
GATGATCTGAAAACATGCTCACGTACCGCGAAATTATGGTTGCAATATCT
AGATTACAAGGAAGTTGTCAAGGATTTCAATAGATCAGAAAAGACAGGAG
ATTGGAAGCTTTACCTTTTCTCGGATGATCGACCTGTTTGCAGCAACCGC
TCACATCCACTACGCTAAGAANTACCTTTTCTCGGATGATCGACCTGTTT
GCAGCAACCGCTCACATCCACTACGCTAAGAACGCCAGGCTACACCTCCA
AAATATACTCAAGCTCAAGACAATTCACCCTTTGGTTTACAAGCAGTTTT
CAAATGGTTACCACACTGTGAGACGAAGCGATAGATTTTGGGCTGGTTTA
TGGTCGGATTTGATCATCAAGCAGGTAATGATGCAATTCATCAAAAGCAC
TGGAGGCCTCACTTGTAGTAGGGGAATCGCCGCATCAACACGTCAACTTT
GGATTGGAAGCATTCATTGATCTGCCGACATCCACAACGCTATGTCAAAA
CGAGCCAGCAACATGTCAATCTTTCGTTGAGCAGAATAAAGTGTGACAAT
AAAGATTTCGCTACCGTGAAGGAATGGTTTGGCAACCACAAACCGTTCGA
CAAAACAGAGCCTGAATTGAAGAGTCTCTCGAGTGAACTGATCGCTGAGC
CAGAGATTAACTGTGATGTCGCCGAAGACGTTGAAGCAAGACGACGTTGT
GTTCGAGGAGGTCAGGATTCGACAGAAGGAGAAAGCAAAAACCTTCGAAG
ACATGCTTTCAGCAATCAAGATTGGAGACAGCAAAAAGTCCAACAATATT
TTTTAGTCGACTAACTGCTCTTATCAACTTCACTGAGGATGTTGGTGAAA
ATTTCTGTCCTGCCTAACCCCCGAACCTATATCATTATTCAAGCTTAAAA
CCTCAAAAGTCCTTCGTAACCACTTCATCACAAAGCAAACGCATGCAAGC
AAACGCTTGTCAGCTAGAATCTCACCGATGGTGGTGCATAGCTACACAAA
GTCTCGTGGCCGAAAACAACATATTCAGCGGTGATCGACGAGTATGTCAA
CTTCCTCAAGAATAGCTTCAAGTGTTTTTTCTACTGTCGtcattgttttc
gatggaaatgAGGATGAAATGTCAACAAAAGGACAAGAACACGATCGACG
AACGGGGAAAACATCAGCTTCTGTATCCATCTCACTAGATGTTAAAGTGA
CTACCAACAGAGAATTGTTCTTATCTAACCATCTAACAAAGTTCAGTTGA
TCAAAATACTTTCGTCTGCTTTCAAAAAGCAAGGATTCCTGACAGACCAA
ATTGACGGTGATGCAGATGTGTTGATTGTGCAAAAAAGACTACacgttgt
tgtttttttaagaaactagttttatcaagcagcctcaatgtttcttaaga
aatcggccttttgagccttaaatgtttcatacatgtttctaaactttttg
acataatcagcctcgtGGAAAGCTgaattggaaggttcttaaaagaaacc
gaatttaaaaatgttattttctca Coding sequence (CDS) from alignment at sc0000180:469178..471501 >TCONS_00014092 ID=TCONS_00014092|Name=TCONS_00014092|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0000180:469178..471501 (Clytia hemisphaerica)
ATGCTCCAACCAAGCTGGCCCGGGTATATGAGGAAAGTCTGCACTGGCAC
CTACCCTGGTCAATCTTCAGTATCGCTGCTCCCGATCATCGACTTAAACC
CGAATGATATGACATGTGCCTACTCAACGCTCGTGTTTGTAAAATCTCAA
TCGGAATTCTCAGGCATCAACACCCCTGTGATTACGTTTGATCAACCCTT
GTGGATTAAAGCGTATGAAATAATCAAAGAAAAGTCGTTAAACATGGTAT
GTATGCTTGGTGGTTTCCATTTGCTAATGAGCTTTATGGGTATTATCGGA
TCGTTAATGAAAGCAAGTGGCTTGGAGGAATCGATGGAGCAGATTTATGC
AAAGAACACTGTTCCACACATCACAAGTGAGCACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014092-exon-sc0000180-1491911889:469178..471501 | TCONS_00014092-exon-sc0000180-1491911889:469178..471501 | Clytia hemisphaerica | exon |
| TCONS_00014092-exon-sc0000180-1510915933:469178..471501 | TCONS_00014092-exon-sc0000180-1510915933:469178..471501 | Clytia hemisphaerica | exon |
| TCONS_00014092-exon-sc0000180-1575043694:469178..471501 | TCONS_00014092-exon-sc0000180-1575043694:469178..471501 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000180 | supercontig | sc0000180:469178..471501 . |
Blast
The following BLAST results are available for this feature:
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