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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014121 ID=TCONS_00014121|Name=TCONS_00014121|organism=Clytia hemisphaerica|type=transcript|length=3480bpRun BLAST on NCBI transcript from alignment at sc0000181:396888..418318+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014121 ID=TCONS_00014121|Name=TCONS_00014121|organism=Clytia hemisphaerica|type=transcript|length=21431bp|location=Sequence derived from alignment at sc0000181:396888..418318+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00014121 vs. Swiss-Prot (Human)
Match: GCN1 (eIF-2-alpha kinase activator GCN1 OS=Homo sapiens GN=GCN1 PE=1 SV=6) HSP 1 Score: 1399.42 bits (3621), Expect = 0.000e+0 Identity = 725/1160 (62.50%), Postives = 905/1160 (78.02%), Query Frame = 1
Query: 1 VNYFGQDNMTSLLDIFDEFLDRAPDSSAHDVIRQSVIILTGSLAKHLSKTDPKIKPIFAKLMGALSTPSQQVQQAVANCLPPLCGAVKNEAAELIKNLLAKLLDSESYGERRGAAYGLAGVVKGFGILSLKQHNVISSLDTAIQDKKVWKHREGALFAFETLCTMLGRLFEPYXXXXXXXXXXCFGDGNQYVREAADDTAKAVMKNLSNHGVKLVLPSLLKALEEEAWRTKTGSAELLGAMSFCAPKQLSSCLPSIVPRLTDVLADSHQKVQKAGQQALRQIGGVIKNPEIQEISSIILDALSDPNKHTVSCLKALLSTSFVHFIDAPSLALIMPTLEKALGQRSTETKKMAAQILGNMYALTDPKDLSPYLPAVVPGLKKSLLDPSPEVRAVSARALGATVKGMGEECFNDLMPWLLETLTSDVSSVDRSGAAQGLSDVLYALGQERLDKLMPDVITTTMKADLAPNIRDGYLMLFIYLPVTFGEDFTGYIGXXXXXXLKGLADESEYVRETALKAGQRIINMYADTAIEFLLPQLEAGLFNGHWRIRYSSVQLLGDLLFKLSGVTGKQTT-VGEEDDNFGTAHSSQVILHTLGKDRRNRIYAGLYMGRSDIALTVRQAALHVWKVIVQNTARTLRDILPTLFELLLGCLASESYDKRQVAARTLGDLVRKLGERXXXXXXXXXXNGLSNPDGDKRQGVCIGLSEIMNSTSRDMIAQFEDSLINTVRAALVDPLADVRLAASETFENLHNAIGHRALDGVLPVVFQKLDDPELSEYALDGLKQVMAVKSKSVLPFLVPKLTTPPVNTKAXGLKQVMAVKSKSVLPFLVPKLTAPPVNTKALAILSSVAGEALIKHLERILPAMIQAVNDAEEGSESELE--GTKALILSVEDEVGIRTIIDELLSALKKQNPGIRKVGASLLAVFCKSTPGDYSMYVQQLFRVIINSMNDVDTNVVGSAWQALDALVKHLDPSEQLQHLPSLKQAIKFVKSDIRNNELPGFCILKKGVTPVLPIFREGILNGPQDVKEQAARLLGEIIQLTSAAALKPSVVHITGPLIRILGDRFNWNVKEAILDTLGLLLEKVGIMLKPFLPQLQTTFVKALNDPTQAVREKAAWALGLLTVLHTRVDSLFTELKNGIKNNEDSGIRETTLKALRTII 3471
+N G++N+ SLL +F+EFL AP+ +++D +RQSV++L GSLAKHL K+DPK+KPI AKL+ ALSTPSQQVQ++VA+CLPPL A+K +A +I+ L+ +LL+S+ Y ER+GAAYGLAG+VKG GILSLKQ ++++L AIQDKK ++ REGALFAFE LCTMLG+LFEPYVVH+LPHLL+CFGDGNQYVREAADD AKAVM NLS HGVKLVLPSLL ALEEE+WRTK GS ELLGAM++CAPKQLSSCLP+IVP+LT+VL DSH KVQKAGQQALRQIG VI+NPEI I+ ++LDAL+DP++ T CL+ LL T FVHFIDAPSLALIMP +++A RST+T+KMAAQI+GNMY+LTD KDL+PYLP+V PGLK SLLDP PEVR VSA+ALGA VKGMGE CF DL+PWL+ETLT + SSVDRSGAAQGL++V+ LG E+L+KLMP+++ T K D+AP++RDGY+M+F YLP+TFG+ FT Y+GPIIP ILK LADE+E+VR+TAL+AGQR+I+MYA+TAI LLPQLE GLF+ WRIR+SSVQLLGDLLF +SGVTGK TT EDDNFGTA S++ I+ LG +RRNR+ AGLYMGRSD L VRQA+LHVWK++V NT RTLR+ILPTLF LLLG LAS DKR +AARTLGDLVRKLGE+ILPEIIPILE GL + D+RQGVCIGLSEIM STSRD + F +SL+ T R AL DPL +VR AA++TFE LH+ IGH+AL+ +LP + ++LDD E+SE+ALDGLKQVMA+KS+ VLP+LVPKLTTPP VNT+ LA LSSVAG+AL +HL ILPA++ A+ + + +LE +A+ILSVED+ G R II+ LL A + G+R+ A +L ++C + DY+ +++ L +I ND V+ +W AL+A+ K LD QL + L + I+ + ++ + +PGFC+ KKGVT +LP+ REG+L G + KE+AA+ LG +I+LTSA AL+PSVV ITGPLIRILGDRF+WNVK A+L+TL LLL KVGI LKPFLPQLQTTF KAL D + VR KAA ALG L +H +VD LFTEL NGI+ ED G+R+T L+ALR +I
Sbjct: 1284 LNTHGKENVNSLLPVFEEFLKNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALSTPSQQVQESVASCLPPLVPAIKEDAGGMIQRLMQQLLESDKYAERKGAAYGLAGLVKGLGILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKLFEPYVVHVLPHLLLCFGDGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWRTKAGSVELLGAMAYCAPKQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNPEILAIAPVLLDALTDPSRKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSLTDQKDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQSSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFGDKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAETAIALLLPQLEQGLFDDLWRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNKAIITALGVERRNRVLAGLYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLLGFLASTCADKRTIAARTLGDLVRKLGEKILPEIIPILEEGLRSQKSDERQGVCIGLSEIMKSTSRDAVLYFSESLVPTARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQLDDEEVSEFALDGLKQVMAIKSRVVLPYLVPKLTTPP-------------------------------VNTRVLAFLSSVAGDALTRHLGVILPAVMLALKEKLGTPDEQLEMANCQAVILSVEDDTGHRIIIEYLLEATRSPEVGMRQAAAIILNIYCSRSKADYTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKLDAGNQLALIEELHKEIRLIGNESKGEHVPGFCLPKKGVTSILPVLREGVLTGSPEQKEEAAKALGLVIRLTSADALRPSVVSITGPLIRILGDRFSWNVKAALLETLSLLLAKVGIALKPFLPQLQTTFTKALQDSNRGVRLKAADALGKLISIHIKVDPLFTELLNGIRAMEDPGVRDTMLQALRFVI 2412 The following BLAST results are available for this feature:
BLAST of TCONS_00014121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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