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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014124 ID=TCONS_00014124|Name=TCONS_00014124|organism=Clytia hemisphaerica|type=transcript|length=616bp
CTTTGTCTCGATTTCGTTTCTCAGATCTTAGAATTTTTGACATTGAATAT
TTCAGGTTGATTATCACTTATGAGATATTTTGGTTGTTCAAATACATAAG
AGAGCTGAGATTTTTAAACTATACAGAATTCTTAATTACAGTAATTCGTA
TAAGTTGCTTTTTTATCCGAGAATGATTTCAAAAGCTATCTATCTATTGC
TCGTCCAATTATTGCTGCTCAATGGTGAATCCTTGGCAATCAAATGTTAT
ATTGGTGAAAATGACGTAATAGACTGTTCACATGGAGATGTTTGTGGTGT
TCAAACTATAGTCACCAATGGTCTGTATGGTCAAACACTCCGAACGCCAA
TGTGCGTTCCAATGGCAACAGAATCAATGTGTTACCAGAATCAACAGGTG
ACAGACTATATGAGTACCAAGTTTTGTTGCTGCAAAAGTGACTTTTGTAA
CAATGAAGAATTTGCAAACGCCTGCAACCCTGGAACAACCTCGAGAACAA
CAACACTCGCACCCAGACCCTGGCCCACATCCTCGGCCGATTCATTCAAA
TGTCAGTACAGTGTACAATCGACTGGATTCGGTGAAGGACTGGACACAAA
CTTAAATGCCGGTGAA Run BLAST on NCBI transcript from alignment at sc0000181:61275..66133- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014124 ID=TCONS_00014124|Name=TCONS_00014124|organism=Clytia hemisphaerica|type=transcript|length=4859bp|location=Sequence derived from alignment at sc0000181:61275..66133- (Clytia hemisphaerica)
CTTTGTCTCGATTTCGTTTCTCAGATCTTAGAATTTTTGACATTGAATAT
TTCAGGTTGATTATCACTTATGAGATATTTTGGTTGTTCAAATACATAAG
AGAGCTGAGATTTTTAAACTATACAGAATTCTTAATTACAGTAATTCGTA
TAAGTTGCTTTTTTATCCGAGAATGATTTCAAAAGCTATCTATCTATTGC
TCGTCCAATTATTGCTGCTCAATGGTGAATCCTTGGCAATCAAATGTTAT
ATTGGTGAAAATGACGTAATAGACTGTTCACATGGAGGTGAGTTGTACAA
TATGTAATAGTTATCGGACAGTTGCGAGTACAATATGAGAAATATTTTAC
GAGTTCCGAGATTTTTCCGTACAATATTTTCCGAGCCTATAGGCGAGGAA
AATATACGGAAAATCCGGAACGAGTGAAATATTTCCATATTGTACGAGCA
AATTTCTGATAACTGGTTTATCGGTGACCCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCATCTTTTCGTCAATTTATATTTTTACATGTAAAATACAAGAT
ATATTGTACTCTTTTTAACCAATCAGATTGCAGATATTTTTTGGATCGCC
GATAATGTATATTAAATATACACTCGGTCTGGAAAAAGCAGAACCAATTG
TGCATAAATAAAATCCATACAATAGACCTTATCGCAGTTTTTTATTTTTC
TAAAAAAGCGATGCATTGTGGGATTATTACAATAGAAATCTCTTAGGAAT
TCCTCGAGCGAATTCTATTGTAATACACTCGAAACTATCCCACAATGGAT
CGCTTTTTTAGAAAAATCAAAAACTTCGATAAGGTCTATTACAGGGTGTC
TCGAAAAAAAAGTCCTGTGTTAGAACAGGACTATAATAAGTCGTGTATGT
ATGTCGAAAATTGATATTCACGTGTTTTAATACAATGCAACCGTTGTAAT
GTTCTTTACTTTTTTGGAAAGAGACGTTCATAAGAATGCTTTATTGGGCT
TTTCAAGAAAAAAATTGAATATGTGGGGTGGAGGATATAACAATTTTCAG
TGATTTACCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAATATCCCCCCCCCCCCCCCATATACGGACATTTTCC
GGAAGAGCCTATTACTGTTTTGTGTTACAGGGAGAATCTAGACAAACACA
CACAAAGATTTTTCTACTTTCAGTCATATTCTGACACAGGACGTTTATCT
GGGATACCCGTATAGATCATTCTCATTACCCATTTGATTGATTTCTTAGT
TAGGGTAGATTTTTCGAGACCCTTGAAATGCACTGCTGAATTGCAATTCT
GACAGTAAAAGCATAGGCGAAGCGAGATACGCTGCAAAATTTATGAGGCC
CCTTATGAGGGAGTGCAGACGTTTATGAAATATTCATTATCTTTTGGTAA
AACAAAGACAATAATTACAGTGTCGTGAAAAACCACTTTCGTCCATAAAT
TTTGCAGGGTATCTCGCTACGGCTAAGTCTGATGTATCTTTGGTAGTTTT
GACTCGCATCCATTTTGATTTGTTTTGCACATAGTGTCGACTTTGATAAA
ATTCACATCCTCCTAGATTTTCATGTCTGTTCGCTAAGCAAATTGTTCCT
GGATTTTCTCCCTAAAATCTCTCTCCTGGAAAAATAGTACAGACATTTGA
CAAATATCCGTTGTTGGCTGCTCTTGAAATATTTGTAAGATTTAATTTTT
CTTTCAATAGAATATCTATTGATTGAACAGAAAAAAAGTTAATCTTATTT
TGATAATTTATCATAAGTCCAGTTTTGATGATGAGTTCTTTGGATTTTAC
TCTGTATAAAAATTCGTCCCTTTTTTTTTGGACACCCTGTATATATTTCG
CCCTTCTTGGAACTCTTAAGCGGGTCTTAAGCACTGCGCACTGTATTACT
GCAGATCGAATTAGCAACTGTTCCTGTAAACAGGACCTACTTGTGGAAGT
TCTTATATAACCTTACGTATCTGATACCGAGACCATAAACTNATGACGTA
TGCCACGTATATCCACTCCAAGGCATTGTTTAATCCTTAAGAATTTATTT
TCTTAAATATAATATATTAACATATTCTATAACACATATTACTTCAGAGT
TTCCCGGTCAAATAATAGTTGTCTAAATCAAACTTCTTTGTTTTACTTTT
CTTAACCCTTTTAACCTGGGGGGGGGGGTAGAATCTACCACCCTCGATTA
TTTTCGATCTAGAAGAGCTATGGCCATGAAATCTGGTACAGATGTTCTCC
ATCATGATATAATTTTTTCAGGACGAAAAAAAAAATTGATAACGTCATTC
AAAAACCGATGACGTCATCACAAAATTTCCATCTAAAATGATTTGATAAA
AAGTTTAGAAGTTATCAGCACTTTCAAATTTTGAGTTTTAAGCGATTTTA
GCTGGGTTTTATGTCATGTTTCACAATAAAGTCATAAAACCTGATCTGGA
CAACCTATGACCCTAAAGTTTTGCACAAGTACTCTTAATAAGATTTTATT
AAAAGTCAGAAAGTTTCAAGTCGTTAAAAATAATTTTCTCCGAGATATAA
ACAAAAGAACTCCAGCGTGGTAGATTCTACCCCCCCTGGGGCTAATAGGG
TTAACACTCACTAAATAGGGTAGATCCAATGGGCCTTAGCGACCCCTAAG
ATGACTACATTTTTTGTTTGTCCTCAGGTACTTCAGATGTTTGTGGTGTT
CAAACTATAGTCACCAATGGTCTGTATGGTCAAACACTCCGAACGCCAAT
GTGCGTTCCAATGGCAACAGAATCAATGTGTTACCAGAATCAACAGGTGA
CAGACTATATGAGTACCAAGGTAAGTTCATAGCTCGAGATAGCAAAATTT
TCAGACCATGGTTCTAACCTTTTTCTTAATCAGCATAGAATTTCTGATCG
ATTGGTATAGTATGCAGGGTTTTAAGCTCAAAAAAATATTTTTCTTAGGT
TAGCAGAGCCTAATAGCCCATGTGACGAAAGAAAGTTTTGAATCCACCAT
TATGGATTTCGAAATTCATGTAGAAAAAAAAATTTTCCTGAATTTTATTA
TTTGAACGGTAGGCAAAACCCTCCGAAAATTTCAAGTAAATTAAGTAAGC
CAATCAAATGTTACAGTCACGCAAATCTGGAACCAAAAGTAATCATTTCA
AAAAATCGAAATCGAAAGTGCTTCATATCTCCAGATAACAAAACTTTCAG
ACCATGATTCTGACCTTTTTCTTAATCAGCATAAAATTTGTGATCGATTG
GTATATAATATGTCTATGTTTAAAGTCAAAAAAGGGTTTTCAAGCAAGAG
GGCTAAAAAGGGTTGAAAATCTAAAATCCGCCATTATGGAAATTTGTGCC
TGATCCAAATAACGCCACACACGTTTTCTGACTCTTCAAGGACTATACTT
TCATGATCAAAAGAAAAAATGACTATACGCCGATGTGCATACGAGACCTA
ACTCAGCCCCTAGAGTATGACTGTTGTAACAACAATTATTGTGTTGGTAT
ATATTTTCTCACATTTTGTTACGTAGTCGAACGTGCGCAACGCACCGGAC
TTAACTTCAGTGCCTTCAAACTATTCATAAGCCAAATTGTAGACCCCCAG
ATATTCACCCAAGGAACAAGTGTGCAAAATTTCAGCCAAATCGAACAACT
TTTGAAGTCTCCAGGCTGCCCCAAAGTTTTAGCCTCGTTTTGGCAAAAAA
CTCGTCCCCAGGCCCCAAAAATCAAAATTTTTGAAAAATAAAAACAAAAC
CCCCAGATATTCCCCCAAGGAACAAGTGTGCAAAATTTCAGCCAAATCGA
ACAATTTTTGAAGTCTCGAGGCTGCCCCAAAGTTTTGGGACATACACACA
GACAGACAGACACACCGACAGACATTCTCAGATTCTAGCTCAACTGAAGT
TGAGAACACGCAACAAAATCAAAAAAGAAAAAAGACCAATACGCATCCCC
TATATCAAATCATATCAGAGGGGATGCGTGCAGCCTATTGCATTATATAT
GGGTCTAAGATTTCGCCTGGATACGTAAGTTCTATAAAGTTCTATCTTAT
GCTTCTTTATCCAGTTTTGTTGCTGCAAAAGTGACTTTTGTAACAATGAA
GAATTTGCAAACGCCTGCAACCCTGGAACAACCTCGAGAACAACAACACT
CGCACCCAGACCCTGGCCCACATCCTCGGCCGATTCATTCAAATGTCAGT
ACAGTGTACAATCGACTGGATTCGGTGAAGGACTGGACACAAACTTAAAT
GCCGGTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014124-exon-sc0000181-1575043694:65847..66133 | TCONS_00014124-exon-sc0000181-1575043694:65847..66133 | Clytia hemisphaerica | exon |
| TCONS_00014124-exon-sc0000181-1575043694:62714..62847 | TCONS_00014124-exon-sc0000181-1575043694:62714..62847 | Clytia hemisphaerica | exon |
| TCONS_00014124-exon-sc0000181-1575043694:61275..61469 | TCONS_00014124-exon-sc0000181-1575043694:61275..61469 | Clytia hemisphaerica | exon |
| TCONS_00014124-exon-sc0000181-1510915933:65847..66133 | TCONS_00014124-exon-sc0000181-1510915933:65847..66133 | Clytia hemisphaerica | exon |
| TCONS_00014124-exon-sc0000181-1510915933:62714..62847 | TCONS_00014124-exon-sc0000181-1510915933:62714..62847 | Clytia hemisphaerica | exon |
| TCONS_00014124-exon-sc0000181-1510915933:61275..61469 | TCONS_00014124-exon-sc0000181-1510915933:61275..61469 | Clytia hemisphaerica | exon |
| TCONS_00014124-exon-sc0000181-1491911889:65847..66133 | TCONS_00014124-exon-sc0000181-1491911889:65847..66133 | Clytia hemisphaerica | exon |
| TCONS_00014124-exon-sc0000181-1491911889:62714..62847 | TCONS_00014124-exon-sc0000181-1491911889:62714..62847 | Clytia hemisphaerica | exon |
| TCONS_00014124-exon-sc0000181-1491911889:61275..61469 | TCONS_00014124-exon-sc0000181-1491911889:61275..61469 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000181 | supercontig | sc0000181:61275..66133 - |
Blast
The following BLAST results are available for this feature:
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