TCONS_00014146 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014146
Unique NameTCONS_00014146
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length340

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014146 ID=TCONS_00014146|Name=TCONS_00014146|organism=Clytia hemisphaerica|type=transcript|length=340bp
CTCATCGGAGGTTTCTTGATCAAATTGAGCTCTCAATTTACTGTGTGCCA
TGACCAGTTGAAATACTTTCATTCTCAAGGCTTCGTTTTCTCCCACCAAA
CTACCACGATCTTTAGAAATCAACCTCAACAAAGGGAACATAAAAGCAAA
CGCCGGTGCGCTGAAAGGTTCTTTCCATGTGTACGCCATAAGGAGGTATT
CATttctctcgaaaacgaaagtgtggAGGGCGGATAACGCCCGAATGGTT
TGGTCTTTAAGTTTCTCCTCTTGCCAGGCTCGGGGGAGTTGACAGGCGGC
TTGACGATGGCGTAGGATAACGTTTGCAATCAATTCACCT
Run BLAST on NCBI

transcript from alignment at sc0000181:392238..392653-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014146 ID=TCONS_00014146|Name=TCONS_00014146|organism=Clytia hemisphaerica|type=transcript|length=416bp|location=Sequence derived from alignment at sc0000181:392238..392653- (Clytia hemisphaerica)
CTCATCGGAGGTTTCTTGATCAAATTGAGCTCTCAATTTACTGTGTGCCA
TGACCAGTTGAAATACTTTCATTCTCAAGGCTTCGTTTTCTCCCACCAAA
CTACCACGATCTTTAGAAATCAACCTCAACAAAGGGAACATAAAAGCAAA
CGCCGGTGCGCTGAAAGGTTCTTTCCATGTGTACGCCATAAGGAGGTATT
CATTTCTCTCGAAAACGAAAGTGTGGAGGGCGGATAACGCCCGAATGGTT
TGGTCTTTAAGTTTCTCCTCTTGCCAGGCTCGAGGGAGTTGACAGGCGGC
TTGACGATGGCGTAGGATAACGTTTGCAATCAATTCACCTAANTTCTTGC
CAGGCTCGGGGGAGTTGACAGGCGGCTTGACGATGGCGTAGGATAACGTT
TGCAATCAATTCACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007914XLOC_007914Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014146-exon-sc0000181-1575043694:392377..392653TCONS_00014146-exon-sc0000181-1575043694:392377..392653Clytia hemisphaericaexon
TCONS_00014146-exon-sc0000181-1575043694:392238..392300TCONS_00014146-exon-sc0000181-1575043694:392238..392300Clytia hemisphaericaexon
TCONS_00014146-exon-sc0000181-1510915933:392377..392653TCONS_00014146-exon-sc0000181-1510915933:392377..392653Clytia hemisphaericaexon
TCONS_00014146-exon-sc0000181-1510915933:392238..392300TCONS_00014146-exon-sc0000181-1510915933:392238..392300Clytia hemisphaericaexon
TCONS_00014146-exon-sc0000181-1491911889:392377..392653TCONS_00014146-exon-sc0000181-1491911889:392377..392653Clytia hemisphaericaexon
TCONS_00014146-exon-sc0000181-1491911889:392238..392300TCONS_00014146-exon-sc0000181-1491911889:392238..392300Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000181supercontigsc0000181:392238..392653 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.95887	1.0785	0	0.712948	18.1899	10.9078	16.9608	10.6817	2.14858	7.48019	6.19448	5.29594	15.1063	12.2339	5.9277	9.75436	9.85727	3.11742	9.11474	5.33202	12.2606	8.97346	12.7876	14.1451	22.5112	35.9853	5.88357	8.81604	12.6262	16.1384
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014146 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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